KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:51:00 2014 Check: 00 .. Name: ENSTTRP00000011884/1-560 Len: 757 Check: 4182 Weight: 1.00 Name: ENSBTAP00000013651/1-753 Len: 757 Check: 3327 Weight: 1.00 Name: ENSP00000305151/1-755 Len: 757 Check: 3739 Weight: 1.00 Name: bmy_06453T0/1-569 Len: 757 Check: 6250 Weight: 1.00 Name: BACU003720/1-538 Len: 757 Check: 3200 Weight: 1.00 // 1 50 ENSTTRP00000011884/1-560 MAAVAAEAAA TAASPGEGGA GEAEPEMEPI PGSEAGTDPL PVTATEASVP ENSBTAP00000013651/1-753 MAAVAAEAAA TAASPGEGGA GEAEPEMEPI PGSEAGTDPL PVTATEASVP ENSP00000305151/1-755 MAAVAAEAAA TAASPGEGGA GEAEPEMEPI PGSEAGTDPL PVTATEASVP bmy_06453T0/1-569 ---------- ---------- ---------- ---------- ---------- BACU003720/1-538 ---------- ---------- ---------- ---------- ---------- 51 100 ENSTTRP00000011884/1-560 DGEADGQQSS PQADEPPFPP PPPPPPPGEL ARSPEAAGPE LQPEEKLPAR ENSBTAP00000013651/1-753 DGEADGQQSS PQADEPPL-- PLPPPPPGEL ARSPEAAGLE LEPEEKLPAR ENSP00000305151/1-755 DGETDGQQSA PQADEPPL-- PPPPPPPGEL ARSPEAVGPE LEAEEKLSVR bmy_06453T0/1-569 ---------- ---------- ---------- ---------- ---------- BACU003720/1-538 ---------- ---------- ---------- ---------- ---------- 101 150 ENSTTRP00000011884/1-560 VVEPAAAAPQ EGPGLSPSPA SPPEEPAAPE ERQEPPLPQP SAPALVPPAG ENSBTAP00000013651/1-753 VVEPGAAAPP EGPSLPPSPV PPPEEPPAPE ERQEPPLPQP AAPALVPPAG ENSP00000305151/1-755 VAESAAAAPQ GGPELPPSPA SPPEQPPAPE EREEPPLPQP VAPALVPPAG bmy_06453T0/1-569 ---------- ---------- ---------- ---------- ---------- BACU003720/1-538 ---------- ---------- ---------- ---------- ---------- 151 200 ENSTTRP00000011884/1-560 GDSAVSQLIP GSEVRVPLDP IIEDSLVVSF RLXXXXXXXX XXXXXXXFGP ENSBTAP00000013651/1-753 GDSAVSQLIP GSEVRVTLDH IIEDALVVSF RLGEKLFSGV LMDLSKRFGP ENSP00000305151/1-755 GDSTVSQLIP GSEVRVTLDH IIEDALVVSF RFGEKLFSGV LMDLSKRFGP bmy_06453T0/1-569 ---------- ---------- ------LFSF HF-------- ----FQRFGP BACU003720/1-538 ---------- ---------- ---------- ---------- ---------- 201 250 ENSTTRP00000011884/1-560 HGIPVTVFPK REYKDKPEAM QLQNNTFQ-G TDVKRDVNGA VPEDPSPVPP ENSBTAP00000013651/1-753 HGIPVTVFPK REYKDKPEAM QLQSNTFQEG TEVKCEVNGA VPNDPSPVPP ENSP00000305151/1-755 HGIPVTVFPK REYKDKPEAM PLQSNTFQEG TEVKCEANGA VPDDPSPVPH bmy_06453T0/1-569 HGIPVTVFPK REYKDKPEAM QLQNNTFQEG TDVKREVNGA VPEDPSPVPP BACU003720/1-538 ---------- ---------M QLQNNTFQEG TDVKREVNGA VPEDPSPVPP 251 300 ENSTTRP00000011884/1-560 PELSLAESLW TCKPPPLFHE GAPYPPPLFI RDTYNQSIPQ PPPRKIKRPK ENSBTAP00000013651/1-753 PELSLAESLW TSKPPPLFHE GAPYPPPLFI RDTYNQSIPQ PPPRKIKRPK ENSP00000305151/1-755 PELSLAESLW TSKPPPLFHE GAPYPPPLFI RDTYNQSIPQ PPPRKIKRPK bmy_06453T0/1-569 PELSLAESLW TSKPPPLFHE GAPYPPPLFI RDTYNQSIPQ PPPRKIKRPK BACU003720/1-538 PELSLAESLW TSKPPPLFHE GAPYPPPLFI RDTYNQSIPQ PPPRKIKRPK 301 350 ENSTTRP00000011884/1-560 RKMYREEPTS IMNAIKLRPR QVLCDKCKNS VVAEKKEIRK GSSASDSSKY ENSBTAP00000013651/1-753 RKMYREEPTS IMNAIKLRPR QVLCDKCKNS VVAEKKEIRK GGSASDPSKY ENSP00000305151/1-755 RKMYREEPTS IMNAIKLRPR QVLCDKCKNS VVAEKKEIRK GSSATDSSKY bmy_06453T0/1-569 RKMYREEPTS IMNAIKLRPR QVLCDKCKNS VIAEKKEIRK GSSASDSSKY BACU003720/1-538 RKMYREEPTS IMNAIKLRPR QVLCDKCKNS VVAEKKEIRK GSSASDSSKY 351 400 ENSTTRP00000011884/1-560 EDKKRRNESV TTVNKKLKTD HKVDGKNQNE SQKRNAVVKV STIAHSRGRV ENSBTAP00000013651/1-753 EDKKRRSESV TTVNKKLKTD HKVDGRSQNE SQKRSAVVKV SNIPHSRGRV ENSP00000305151/1-755 EDKKRRNESV TTVNKKLKTD HKVDGKNQNE SQKRNAVVKV SNIAHSRGRV bmy_06453T0/1-569 EDKKRRNESV TTVNKKLKTD HKVDGKNQNE SQKRNAVVKV SNIAHSRGRV BACU003720/1-538 EDKKRRNESV TTVNKKLKTD HKVDGKNQNE SQKRNAVVKV SNIAHSRGRV 401 450 ENSTTRP00000011884/1-560 VKVSAQANTS KAQLSTKKVL QNKNMDHAKA REVLKIAKEK AQKKQNETST ENSBTAP00000013651/1-753 VKVSAQANTS KAQLNTKKVL QNKNMDHAKA REVLKIAKEK AQKKQSETST ENSP00000305151/1-755 VKVSAQANTS KAQLSTKKVL QSKNMDHAKA REVLKIAKEK AQKKQNETST bmy_06453T0/1-569 VKVSAQANTS KAQLSTKKVL QNKNMDHAKA REVLKIAKEK AQKKQSETST BACU003720/1-538 VKVSAQANTS KAQLSTKKVL QNKNMDHAKA REVLKIAKEK AQKKQSETST 451 500 ENSTTRP00000011884/1-560 SKNAHSKVHF TRRYQNPSSG SLPPRVRLKP QRYRNEENDS SLKTGLEKMR ENSBTAP00000013651/1-753 SRSAHSKVHF TRRYQNPSSG SLPPRVRLKP QRYRNEENDS SLKTGLEKMR ENSP00000305151/1-755 SKNAHSKVHF TRRYQNPSSG SLPPRVRLKP QRYRNEENDS SLKTGLEKMR bmy_06453T0/1-569 SKNAHSKVHF TRRYQNPSSG SLPPRVRLKP QRYRNEENDS SLKTGLEKMR BACU003720/1-538 SKNAHSKVHF TRRYQNPSSG SLPPRVRLKP QRYRNEENDS SLKTGLEKVR 501 550 ENSTTRP00000011884/1-560 SGKMAPKPQS RCTSTRSAG- ---------- ---------- ---------- ENSBTAP00000013651/1-753 SSKMAPKPQS RCTSTRSAGE APSENQSPST GPEEASSGVQ DTTEVLVPGE ENSP00000305151/1-755 SGKMAPKPQS RCTSTRSAGE APSENQSPSK GPEEASSEVQ DTNEVHVPGD bmy_06453T0/1-569 SGKMAPKPQS RCTSTRSAGE APSENQSPSK GPEEASSEVQ DTTEVLVPGE BACU003720/1-538 SGKMAPKPQS RCTSTRSAGE APSENQSPSK GPEEASSEVQ DTTEVLVPGE 551 600 ENSTTRP00000011884/1-560 ---------- -----LNKWQ LLHQTVTSAA APLQCLTDH- ---------- ENSBTAP00000013651/1-753 QEEPQTLGRK GSKSSISVYM TLNQKKSDSS SASVCSIDST DDLKSSNSEC ENSP00000305151/1-755 QDEPQTLGKK GSKNNISVYM TLNQKKSDSS SASVCSIDST DDLKSSNSEC bmy_06453T0/1-569 QDEPQTLGKK GSKSNVSVYM TLNQKKSDSS SASVCSIDST DDLKSSNSEC BACU003720/1-538 QDEPQTLGKK GSKSNVSVYT TLNQKKSDSS SASVCSIDST DDLKSSNSEC 601 650 ENSTTRP00000011884/1-560 ---------- -C-------- ---------- ---------- ---------- ENSBTAP00000013651/1-753 SSSESFDFPP -CMHAPST-S TSSSSKEEKK LSNSLKMKVF SKNVSKCVTP ENSP00000305151/1-755 SSSESFDFPP GSMHAPSTSS TSSSSKEEKK LSNSLKMKVF SKNVSKCVTP bmy_06453T0/1-569 SSSESFDFPP GCMHAPSTSS TSSSSKEEKK LSNSLKMKVF SKNVSKCVTP BACU003720/1-538 SSSESFDFPP GCMHAPSTSS TSSSSKEEKK LSNSLKMKVF SKNVSKCITP 651 700 ENSTTRP00000011884/1-560 ---------- ------GF-- ---RLGALTL TVKRAGLK-- ---------- ENSBTAP00000013651/1-753 DGRTICVGDI VWAKIYGFPW WPARILTITV SRKDSGILVR QEARISWFGS ENSP00000305151/1-755 DGRTICVGDI VWAKIYGFPW WPARILTITV SRKDNGLLVR QEARISWFGS bmy_06453T0/1-569 DGRTICVGDI VWAKIYGFPW WPARILTITV SRKDNGLLVR QEARISWFGS BACU003720/1-538 DGRTICVGDI VWAKIYGFPW WPARILTITV SRKDNGLLVR QEARISWFGS 701 750 ENSTTRP00000011884/1-560 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000013651/1-753 PTTSFLALSQ LSPFLENFQS RFNKKRKGLY RKAITEAAKA AKQLTPEVRA ENSP00000305151/1-755 PTTSFLALSQ LSPFLENFQS RFNKKRKGLY RKAITEAAKA AKQLTPEVRA bmy_06453T0/1-569 PTTSFLALSQ LSPFLENFQS RFNKKRKGLY RKAITEAAKA AKQLTPEVRA BACU003720/1-538 PTTSFLALSQ LSPFLENFQS RFNKKRKGLY RKAITEAAKA AKQLTPEVRA 751 800 ENSTTRP00000011884/1-560 ------- ENSBTAP00000013651/1-753 LLTQFES ENSP00000305151/1-755 LLTQFET bmy_06453T0/1-569 LLTQFET BACU003720/1-538 LLTQFET