KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:51:03 2014 Check: 00 .. Name: ENSTTRP00000007943/1-1083 Len: 1166 Check: 6167 Weight: 1.00 Name: ENSP00000379383/1-1142 Len: 1166 Check: 8671 Weight: 1.00 Name: ENSBTAP00000013661/1-1146 Len: 1166 Check: 3364 Weight: 1.00 Name: bmy_18441T0/1-1125 Len: 1166 Check: 2455 Weight: 1.00 Name: BACU015731/1-328 Len: 1166 Check: 4162 Weight: 1.00 // 1 50 ENSTTRP00000007943/1-1083 --------LL LHCRHEASSP KLDNLVPSGK MKSVLVFLGL LCYSIAMP-- ENSP00000379383/1-1142 -------MLV LRCRLGTSFP KLDNLVPKGK MKILLVFLGL LGNSVAMP-- ENSBTAP00000013661/1-1146 -------KML LQCRHEASSP KLDYLVPSGK MKILLVFLSL LGYSIAMPLQ bmy_18441T0/1-1125 MKILVKKMLL LQCRHEASSP KLDNLT---- ---------L SRSDFLEQYQ BACU015731/1-328 ---------- ---------- ---------- ---------- ---------- 51 100 ENSTTRP00000007943/1-1083 MQMPRMPGFS SKSEE-MRYG HFNFMS-PPM VHLGPLYGNG MQLPQLFLPY ENSP00000379383/1-1142 MHMPRMPGFS SKSEEMMRYN QFNFMNGPHM AHLGPFFGNG --LPQQFPQY ENSBTAP00000013661/1-1146 MHMPRIPGFS SKSEEMMRYG HFNFMNFPHL AHLSPFYGNG IQLPQLFPQY bmy_18441T0/1-1125 MQMPRIPGFS SKSEEMMRYG HLNFMNSPPM AHLGPLYGNG MQLPQLFLPY BACU015731/1-328 ---------- ---------- ---------- ---------- ---------- 101 150 ENSTTRP00000007943/1-1083 QMPMWPQPPP NKKRPQKPSS PSAPKHQSKT DQAPETQKPN QPQLKQPLPE ENSP00000379383/1-1142 QMPMWPQPPP NTWHPRKSSA PKRHN---KT DQTQETQKPN QTQSKKPPQK ENSBTAP00000013661/1-1146 QMPMWPQPPP NKKSPQKPSS PAAPK---QT DQAPETPSPN QPQPTDSPPN bmy_18441T0/1-1125 QMPMWSQPPP NKKRPQKPSS PSASKHQSKT DQAPETQKPN QPQLKQPLPE BACU015731/1-328 ---------- ---------- ---------- ---------- ---------- 151 200 ENSTTRP00000007943/1-1083 HPLKQPSPTP TQPQ-EETQT PQAFPPFGNG LFPYQQLPWH VPHRV-PPGY ENSP00000379383/1-1142 RPLKQPSHNQ PQPE-EEAQP PQAFPPFGNG LFPYQQPPWQ IPQRLPPPGY ENSBTAP00000013661/1-1146 QHLKQPSTTT AQPQEEETQT PQAFPPFGNG LFPYQQPPWH IPHKI-PPGF bmy_18441T0/1-1125 HPLKQPSPTP TQPQ-EETQT PQAFPPFGNG LFPYQQPPWH VPLRV-PSGY BACU015731/1-328 ---------- ---------- ---------- ---------- ---------- 201 250 ENSTTRP00000007943/1-1083 GRPPVSNEEG GNYYLEH--- ---DGRPPLY SEEM--QDFE KEKDPK---- ENSP00000379383/1-1142 GRPPISNEEG GNPYFGYFGY HGFGGRPPYY SEEMFEQDFE KPKEEDPPKA ENSBTAP00000013661/1-1146 GRPPGSNEEG GNPFFGFFGY HGFGGRPPYY SEEMFE-DFE KPKEEDPPKT bmy_18441T0/1-1125 GRPPVSSEEG GNPYFGYFGY HGFGGRPPYY SEEMFEQDFE KPKEKDPPKT BACU015731/1-328 ---------- ---------- ---------- ---------- ---------- 251 300 ENSTTRP00000007943/1-1083 ESPATDHGNS TVETNTQS-- ----NPRGSQ GGNDTSPTGN SVQGSNTVSN ENSP00000379383/1-1142 ESPGTEPTAN STVTETNSTQ ---PNPKGSQ GGNDTSPTGN STPGLNTGNN ENSBTAP00000013661/1-1146 ETPATDPSVN STVPETNSTQ PGAPSPRAGQ GGNDTSPAGN NGQDPNTVSN bmy_18441T0/1-1125 ESPATDPSAN STVPETNSTQ SNAPNPRGSQ GGNDTSPTGN SVQGSNTVSN BACU015731/1-328 ---------- ---------- ---------- ---------- ---------- 301 350 ENSTTRP00000007943/1-1083 PTAQNS---- PAVNVSGQGV PRSQTPQGPS QTNIHENYPN PNIRSFPAGR ENSP00000379383/1-1142 PPAQNGIGPL PAVNASGQGG PGSQIPWRPS QPNIRENHPY PNIRNFPSGR ENSBTAP00000013661/1-1146 PTVQNN---- PVVNVSGQGV PRSQTPWRPS QTNIHENYPY PNIRNFPAGR bmy_18441T0/1-1125 PTAQNS---- PAVNVSGQGV PRSQTLRGPS QTNIHENYPN PNIRSFPAGR BACU015731/1-328 ---------- ---------- ---------- ---------- ---------- 351 400 ENSTTRP00000007943/1-1083 QWRPTGTATG HKRNGPFYRN QQIQRGPRWN SFVLEGKQAV RPGYPIYRRA ENSP00000379383/1-1142 QWYFTGTVMG HRQNRPFYRN QQVQRGPRWN FFAWERKQVA RPGNPVYHKA ENSBTAP00000013661/1-1146 QWHPTGTSMG NRRNGPFYRN QQIQRAPRWN SFVLEGKQAI RLGYPIYRRA bmy_18441T0/1-1125 QWRPTGTVMG HRRNGPFYGN QQIQRGPWWN SFALEGKQAV RLGYPIYRRA BACU015731/1-328 ---------- ---------- ---------- ---------- ---------- 401 450 ENSTTRP00000007943/1-1083 YASTARGNSP NYAGNPANFR RKPEGPNKHP VGTNVAPLGP KHGTVGHNEN ENSP00000379383/1-1142 YPPTSRGNYP NYAGNPANLR RKPQGPNKHP VGTTVAPLGP KPGPVVRNEK ENSBTAP00000013661/1-1146 YASTVRGNYP NYAGNPVNFR RKPEGPSKQP EGT-IAPLGP KHGTTGHNEN bmy_18441T0/1-1125 YASTARGNSP NYAGNPANFR RKPEGPNKHP VGTNVAPLGP KHGTVGHNEN BACU015731/1-328 ---------- ---------- ---------- ---------- ---------- 451 500 ENSTTRP00000007943/1-1083 IQNPREKPVS QKEGIVIPTR DPSGPWRNSQ DYGVNKSNYK LPHPEDNMLV ENSP00000379383/1-1142 IQNPKEKPLG PKEQIIVPTK NPTSPWRNSQ QYEVNKSNYK LPHSEGYMPV ENSBTAP00000013661/1-1146 IQNPKEKPVS QKERIVIPTR DPNGPWRNSQ DYGVTKSNYK LPHPEGNILV bmy_18441T0/1-1125 IQNPREKPVS QKERIVIPTR DPNGPWRNSQ DYGVNKSNCK LPHPEHDMLV BACU015731/1-328 ---------- ---------- ---------- ---------- ---------- 501 550 ENSTTRP00000007943/1-1083 PNFNSIGQRE NSYYLRGDSR RAPNSNGQTQ SQNLLKGIIL EPRRIPYESE ENSP00000379383/1-1142 PNFNSVDQHE NSYYPRGDSR KVPNSDGQTQ SQNLPKGIVL GSRRMPYESE ENSBTAP00000013661/1-1146 PNFNSIDQHE NSYYPRGDSR GTPNSNGQTQ SQNLPKGIIL EPRRIPYESE bmy_18441T0/1-1125 PNFNSIGQRE NSYYLRGDSR RAPNSNGQTQ SQNLPKGIIL EPRRIPYESE BACU015731/1-328 ---------- ---------- ---------- ---------- ---------- 551 600 ENSTTRP00000007943/1-1083 INQPELKHSI YQP-VYPEGF PSPAREHFNA GRNTWNQQEI SPPFKEDPGR ENSP00000379383/1-1142 TNQSELKHSS YQPAVYPEEI PSPAKEHFPA GRNTWDHQEI SPPFKEDPGR ENSBTAP00000013661/1-1146 INQPEIKHST HQP-VYPEGS PSPARERFPA GRNTWNQQEI SPPFKEDPGR bmy_18441T0/1-1125 INQPELKHSI YQP-VYPEGF PSPAREHFPA GRNTWNQQEI SPPFKEDPGR BACU015731/1-328 ---------- ---------- ---------- ---------- ---------- 601 650 ENSTTRP00000007943/1-1083 HEEHLPHPSH GSGGRVYYPD YNPYDPRENS PYPRSNTXXX XXXXXXXXXX ENSP00000379383/1-1142 QEEHLPHPSH GSRGSVFYPE YNPYDPRENS PYLRGNTWDE RDDSPNTMGQ ENSBTAP00000013661/1-1146 KEEHLPHPSL GSRGRIYYTD YNPYDRRENP PYLRSNSWDE RNDPPNTMGQ bmy_18441T0/1-1125 HEEHLPHPSH GSGGRVYYPD YNPYDPRENS PYLRNNTWAE RDVSPNTMRQ BACU015731/1-328 ---------- ---------- ---------- ---------- -------MRQ 651 700 ENSTTRP00000007943/1-1083 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000379383/1-1142 KESPLYPINT PDQKEIVPYN EEDPVDPTGD EVFPGQNRWG -EELSFKGGP ENSBTAP00000013661/1-1146 SENPHYPMNT PDPKETIPYN EEGPADPTGD ETFPGQTRWS VDESNFKTAP bmy_18441T0/1-1125 PENPHYPMNT PDPKKTIPYN EEDPIDPTGD ESFPGQSRWG VAESSFKGDP BACU015731/1-328 PENPHYPMNT PDPKKTIPYN EEDPIDPTGD ESFPGQSRWG VAESSFKGDP 701 750 ENSTTRP00000007943/1-1083 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX X---XXXXXX XXXXXXXXXX ENSP00000379383/1-1142 TVRHYEGEQY TSNQPKEYLP YSLDNPSKPR EDFYYSEFYP WSPDENFPSY ENSBTAP00000013661/1-1146 TAR-YEGKQY TSNQPKEYSP YSLDNLPKPR EYFPYGEFYP WSPDENFPSY bmy_18441T0/1-1125 TVRHYESEQY TSNQPKGYLP YSLDNPSKPR EDFPYGEFYP WSPDENFPSY BACU015731/1-328 TVRHYESEQY TSNQPKEYLP YSLDNPSKPR EDFPYGEFYP WSPDENFPSY 751 800 ENSTTRP00000007943/1-1083 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXEQERPY ENSP00000379383/1-1142 NTASTMPPPI ESRGYYVNNA AGPEESTLFP SRNSWDHRIQ AQGQRERRPY ENSBTAP00000013661/1-1146 NTAPTIPLLV ENRGYYPTNA VGQEENTMFP SWNSWDHMVQ VQGQKERRPY bmy_18441T0/1-1125 NTAPTEPWPV ESRGYYANNA VGQEESTMFP SWNSWDHRIQ AQEQKERRPY BACU015731/1-328 NTAPTEPRPV ESRGYYANNA VGQEESTMFP SWNSWGHRIQ AQEQKERRPY 801 850 ENSTTRP00000007943/1-1083 FNRNFWDHAT NLHKAPASSP YQKENKPYSS DSPAGLQKNP IWHEGENLNY ENSP00000379383/1-1142 FNRNIWDQAT HLQKAPARPP DQKGNQPYYS NTPAGLQKNP IWHEGENLNY ENSBTAP00000013661/1-1146 FTRTFWGQPT NLPKAPASPP YHKENQPYFS NSPTGLQKDP TWHEGENLNY bmy_18441T0/1-1125 FNRNFWDQPT NLHRAPASSP YQKENKPYSS NSPAGLQKNP IWHE------ BACU015731/1-328 FNRNFWDQPT NLHRAPASSP YQKENKPYSS NSPAGLQKNP IWHEGENLNY 851 900 ENSTTRP00000007943/1-1083 GMQTTRLNSP EREHLVFPDL IPPSYPAVQK GAHLFHLSQR GPCCAGGSTG ENSP00000379383/1-1142 GMQITRMNSP EREHSSFPNF IPPSYPSGQK EAHLFHLSQR GSCCAGSSTG ENSBTAP00000013661/1-1146 GMQITRLNSP EGGHLAFPDL IPPHYPGSQK ETRLFHLSQR GPCCAGGSIG bmy_18441T0/1-1125 ---------- EREHLAFPDL IPPSYPAGQK GAHLFHLSQR GPCCAGGSTG BACU015731/1-328 GMQITRLNSP EREHLAFPDL IPPSYPAGQN GAHLFHLSQR GPCCAGGSTG 901 950 ENSTTRP00000007943/1-1083 PKDNPLALQD YTPSFGLALG ENQDTSPVYI EDSQTTHVRH TISPTSILAG ENSP00000379383/1-1142 PKDNPLALQD YTPSYGLAPG ENQDTSPLYT DGSHTKQTRD IISPTSILPG ENSBTAP00000013661/1-1146 PKDNPLALQD YTLFFGLAPG ENQDTSPLYT EDSHTKHERY TISPTSILPG bmy_18441T0/1-1125 PKDNPLALQG YTPSFGLAPG ENQDTSPVYT EDSHTKHARH TISLTSILPG BACU015731/1-328 PRDNPLALQD YTPSFGLAPG ENQDTSPVYT EDSHTKHARH TISPTSILPG 951 1000 ENSTTRP00000007943/1-1083 QRNSSEKRLP GESQNPSPFR DDMSTLKRNT PRSI-NQLGQ RGIMPFPETS ENSP00000379383/1-1142 QRNSSEKR-- -ESQN--PFR DDVSTLRRNT PCSIKNQLGQ KEIMPFPEAS ENSBTAP00000013661/1-1146 QRNSSEKRLP GESQNPSPFR DDVSTLRRNT PCSINNQLSQ RGIRPLPEAS bmy_18441T0/1-1125 QRNSSEKRLP GESQNPSPFR DDVSTLKRNT PRSI-HQLGQ RGIMPFPETS BACU015731/1-328 QRNSSEKRLP GESQNPSPFR DDVSL----- ---------- ---------- 1001 1050 ENSTTRP00000007943/1-1083 SLQSKNTPCL KSDLGGEG-N ILEQIFEGNQ LNERTVDLTP EQLVIGTPDE ENSP00000379383/1-1142 SLQSKNTPCL KNDLGGDGNN ILEQVFEDNQ LNERTVDLTP EQLVIGTPDE ENSBTAP00000013661/1-1146 SLQSKNIPCL KSDL-EDGNH VLEQTLEGNQ LNERPVDLTP EQLVMDTPDE bmy_18441T0/1-1125 SLQSKNTPCL KSDLGGEG-N ILEQIFEGNP LNERTVDLTP EQLVIGIRDE BACU015731/1-328 ---------- ---------- ---------- ---------- ---------- 1051 1100 ENSTTRP00000007943/1-1083 GPKPEGIPSE VQGNEGER-Q QRPSSILQLP CFGSKLTKYH TSSTGTPSSI ENSP00000379383/1-1142 GSNPEGIQSQ VQENESERQQ QRPSNILHLP CFGSKLAKHH SSTTGTPSSD ENSBTAP00000013661/1-1146 GPKPEGIPSE VQGNGGKRQQ QRPSTILKLP CFDSKLTKYY TSSTGTPSSL bmy_18441T0/1-1125 GPKPEGIPSE VQRNEGER-Q QRPSSILQLP CFGSKLTKYH TSSTGTPSSF BACU015731/1-328 ---------- ---------- ---------- ---------- ---------- 1101 1150 ENSTTRP00000007943/1-1083 GRQGSFDGDP ITPTEIPNSL AELATR---- ---------- ---------- ENSP00000379383/1-1142 GRQSPFDGDS ITPTENPNTL VELATEEQFK SINVDPLDAD EHSPFEFLQR ENSBTAP00000013661/1-1146 GRQGSFDGDP IMPTEIPNSL AELATGAQFQ NINVDPLNAD DHTPFDPLQV bmy_18441T0/1-1125 GRQGSFDGIQ LRLLKFLTHW --LTTRAQFQ NINVDPLNAD EHTLFDSLQV BACU015731/1-328 ---------- ---------- ---------- ---------- ---------- 1151 1200 ENSTTRP00000007943/1-1083 ---------- ------ ENSP00000379383/1-1142 GTNVQDQVQD CLLLQA ENSBTAP00000013661/1-1146 GTNPQDQVQD CLLLQA bmy_18441T0/1-1125 GTNPQDQVQD CLLLQA BACU015731/1-328 ---------- ------