KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:51:03 2014 Check: 00 .. Name: ENSP00000356042/1-586 Len: 645 Check: 3115 Weight: 1.00 Name: ENSBTAP00000013663/1-581 Len: 645 Check: 6208 Weight: 1.00 Name: ENSTTRP00000010759/1-582 Len: 645 Check: 8595 Weight: 1.00 Name: bmy_13766T0/1-621 Len: 645 Check: 8845 Weight: 1.00 Name: BACU011757/1-586 Len: 645 Check: 4900 Weight: 1.00 // 1 50 ENSP00000356042/1-586 MPKPINVRVT TMDAELEFAI QPNTTGKQLF DQVVKTIGLR EVWYFGLHYV ENSBTAP00000013663/1-581 MPKPINVRVT TMDAELEFAI QPNTTGKQLF DQVVKTIGLR EVWYFGLQYV ENSTTRP00000010759/1-582 ----INVRVT TMDAELEFAI QPNTTGKQLF DQVVKTIGLR EVWYFGLQYV bmy_13766T0/1-621 MPKPINVRVT TMDAELEFAI QPNTTGKQLF DQVVKTIGLR EVWYFGLQYV BACU011757/1-586 MPKPINVRVT TMDAELEFAI QPNTTGKQLF DQVVKTIGLR EVWYFGLQYV 51 100 ENSP00000356042/1-586 DNKGFPTWLK LDKKVSAQEV RKENPLQFKF RAKFYPEDVA EELIQDITQK ENSBTAP00000013663/1-581 DNKGFPTWLK LDKKVSAQEV RKESPLQFKF RAKFYPEDVA EELIQDITQK ENSTTRP00000010759/1-582 DNKGFPTWLK LDKKVSAQEV RKENPLQFKF RAKFYPEDVS EELIQDITQK bmy_13766T0/1-621 DNKGFPTWLK LDKK----EV RKENPLQFKF RAKFYPEDVS EELIQDITQK BACU011757/1-586 DNKGFPTWLK LDKKVSAQEV RKENPLQFKF RAKFYPEDVS EELIQDITQK 101 150 ENSP00000356042/1-586 LFFLQVKEGI LSDEIYCPPE TAVLLGSYAV QAKFGDYNKE VHKSGYLSSE ENSBTAP00000013663/1-581 LFFLQVKEGI LSDEIYCPPE TAVLLGSYAV QAKFGDYNKE LHKAGYLGSE ENSTTRP00000010759/1-582 LFFLQVKEGI LSDEIYCPPE TAVLLGSYAV QAKFGDYGKE LHKSGYLGSE bmy_13766T0/1-621 LFFLQVKEGI LSDEIYCPPE TAVLLGSYAV QAKFGDFSKE LHKSGYLSSE BACU011757/1-586 LFFLQVKEGI LSDEIYCPPE TAVLLGSYAV QAKFGDFSKE LHKSGYLSSE 151 200 ENSP00000356042/1-586 RLIPQRVMDQ HKLTRDQWED RIQVWHAEHR GMLKDNAMLE YLKIAQDLEM ENSBTAP00000013663/1-581 RLIPQRVMDQ HKLTRDQWED RIQVWHAEHR GMLKDSAMLE YLKIAQDLEM ENSTTRP00000010759/1-582 RLIPQRVMDQ HKLTRDQWED RIQVWHAEHR GMLKDSAMLE YLKIAQDLEM bmy_13766T0/1-621 RLIPQRVMDQ HKLTRDQWED RIQVWHAEHR GMLKDNAMLE YLKIAQDLEM BACU011757/1-586 RLIPQRVMDQ HKLTRDQWED RIQVWHAEHR GMLKDNAMLE YLKIAQDLEM 201 250 ENSP00000356042/1-586 YGINYFEIKN KKGTDLWLGV DALGLNIYEK DDK------- ---------- ENSBTAP00000013663/1-581 YGINYFEIKN KKGTDLWLGV DALGLNIYEK DDK------- ---------- ENSTTRP00000010759/1-582 YGINYFEIKN KKGTDLWLGV DALGLNIYEK DDK------- ---------- bmy_13766T0/1-621 YGINYFEIKN KKGTDLWLGV DALGLNIYEK DDKCQCSVLP QAPGSQPYPD BACU011757/1-586 YGINYFEIKN KKGTDLWLGV DALGLNIYEK DDK------- ---------- 251 300 ENSP00000356042/1-586 ---------- --LTPKIGFP WSEIRNISFN DKKFVIKPID KKAPDFVFYA ENSBTAP00000013663/1-581 ---------- --LTPKIGFP WSEIRNISFN DKKFVIKPID KKAPDFVFYA ENSTTRP00000010759/1-582 ---------- --LTPKIGFP WSEIRNISFN DKKFVIKPID KKAPDFVFYA bmy_13766T0/1-621 IREGSSAASE KRLTPKIGFP WSEIRNISFN DKKFVIKPID KKAPDFVFYA BACU011757/1-586 ---------- --LTPKIGFP WSEIRNISFN DKKFVIKPID KKAPDFVFYA 301 350 ENSP00000356042/1-586 PRLRINKRIL QLCMGNHELY MRRRKPDTIE VQQMKAQARE EKHQKQLERQ ENSBTAP00000013663/1-581 PRLRINKRIL QLCMGNHELY MRRRKPDTIE VQQMKAQARE EKHQKQLERQ ENSTTRP00000010759/1-582 PRLRINKRIL QLCMGNHELY MRRRKPDTIE VQQMKAQARE EKQQKQLERQ bmy_13766T0/1-621 PRLRINKRIL QLCMGNHELY MRRRKPDTIE ---------- ---------- BACU011757/1-586 PRLRINKRIL QLCMGNHELY MRRRKPDTIE VQQMKAQARE EKHQKQLERQ 351 400 ENSP00000356042/1-586 QLETEKKRRE TVEREKEQMM REKEELMLRL QDYEEKTKKA ERELSEQIQR ENSBTAP00000013663/1-581 QLETEKKRRE TVEREKEQMM REKEELMLRL QDYEEKTRKA EKELSDQIQR ENSTTRP00000010759/1-582 QLETEKKRRE IVEREKEQMM REKEELMLRL QDYAEKTRKA EKELSDQIQR bmy_13766T0/1-621 QLETEKKRRE TVEREKEQMM REKEELMLRL QDYEEKTRKA EKELSDQIQR BACU011757/1-586 QLETEKKRRE TVEREKEQMM REKEELMLRL QDYEEKTRKA EKELSDQIQR 401 450 ENSP00000356042/1-586 ALQLEEERKR AQEEAERLEA DRMAALRAKE ELERQAVDQI KSQEQLAAEL ENSBTAP00000013663/1-581 ALKLEEERKR AQEEAGRLEA DRLAALRAKE ELERQAADQI KSQEQLATEL ENSTTRP00000010759/1-582 ALKLEEERKR AQEEAERLEA ERLAALHAKD ELERQAADQI KSQEQLATEL bmy_13766T0/1-621 ALTLEEERKR AQAESERLEA ERLAALHAKD ELERQAADQI KSQEQLATEL BACU011757/1-586 ALTLEEERKR AQAESERLEA ERLAALHAKD ELERQAADQI KSQEQLATEL 451 500 ENSP00000356042/1-586 AEYTAKIALL EEARRRKEDE VEEWQHRAKE AQDDLVKTKE ELHLVMTAPP ENSBTAP00000013663/1-581 AEYTAKIALL EEARRRKENE VEEWQLRAKE AQDDLVKTRE ELHLVMTA-- ENSTTRP00000010759/1-582 AEHTAKIALL EEARRRKEDE VEEWQLRAKE AQDDLVKTKE ELHLVMTAPP bmy_13766T0/1-621 AEYTAKIALL EEARRRKEDE VETWQLRAKE AQDDLVKTKE ELHLVMTTPP BACU011757/1-586 AEYTAKIALL EEARRRKEDE VEAWQLRAKE AQDDLVKTKE ELHLVMTTPP 501 550 ENSP00000356042/1-586 PPPPPVYEPV SYHVQESLQD EGAEPTGYSA ELSSEGIRDD RNEEKRITEA ENSBTAP00000013663/1-581 PPPPPVYEPV NYHVHEGPQE EGTE---LSA ELSSEGILDD RNEEKRITEA ENSTTRP00000010759/1-582 PPPPPVYEPV NYHVQENPQE EGTEYTGYSA ELSSEGILDD RNEEKRITEA bmy_13766T0/1-621 PPPPPAYEPV HYHVQENPQE EGTEYTGYSA ELSSEGILDD RNEEKRITEA BACU011757/1-586 PPPPPVYEPV NYHVQENPQE EGTEYTGYSA ELSSEGILDD RNEEKRITEA 551 600 ENSP00000356042/1-586 EKNERVQRQL L--------- ---------- ---------- -TLSSELSQA ENSBTAP00000013663/1-581 EKNERVQRQL M--------- ---------- ---------- -TLTSELSQA ENSTTRP00000010759/1-582 EKNERVQRQL R--------- ---------- ---------- -TLTSELSQA bmy_13766T0/1-621 EKNERVQRQL RVSAMRAGPP SPRRGGLRVG RRADRGCFAL QTLTSELSQA BACU011757/1-586 EKNERVQRQL R--------- ---------- ---------- -TLTSELSQA 601 650 ENSP00000356042/1-586 RDENKRTHND IIHNENMRQG RDKYKTLRQI RQGNTKQRID EFEAL ENSBTAP00000013663/1-581 RDENKRTHND IIHNENMRQG RDKYKTLRQI RQGNTKQRID EFEAM ENSTTRP00000010759/1-582 RDENKRTHND IIHNENMRQG RDKYKTLRQI RQGNTKQRID EFEAM bmy_13766T0/1-621 RDENKRTHND IIHNENMRQG RDKYKTLRQI RQGNTKQRID EFEAM BACU011757/1-586 RDENKRTHND IIHNENMRQG RDKYKTLRQI RQGNTKQRID EFEAM