KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 16:51:04 2014 Check: 00 .. Name: ENSP00000360147/1-674 Len: 800 Check: 5038 Weight: 1.00 Name: ENSTTRP00000002002/1-672 Len: 800 Check: 4911 Weight: 1.00 Name: ENSBTAP00000013664/1-673 Len: 800 Check: 1110 Weight: 1.00 Name: bmy_16242T0/1-764 Len: 800 Check: 8355 Weight: 1.00 // 1 50 ENSP00000360147/1-674 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000002002/1-672 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000013664/1-673 ---------- ---------- ---------- ---------- ---------- bmy_16242T0/1-764 MLGQKEPEIF GLCPGQAHTL FWVTGSQQRL PGAVESSPPS LTPGTLRNQR 51 100 ENSP00000360147/1-674 ---MARAHW- ---------- GC-CP---W- ---------L VL-------- ENSTTRP00000002002/1-672 ---MARAPW- ---------- GC-CP---W- ---------L VL-------- ENSBTAP00000013664/1-673 ---MAWARW- ---------- GG-HP---W- ---------L VL-------- bmy_16242T0/1-764 PEDSPSTSWT PPPHSQPPPP GCSCPGKPWK KRPRKQPYPL SLDPPSTQHR 101 150 ENSP00000360147/1-674 ---------- ---------- LCACAWGHTK PVDLGGQDVR NCSTNPPYLP ENSTTRP00000002002/1-672 ---------- ---------- LCXXXXXXXX XXXXXXXXXX XXXXXXXYLP ENSBTAP00000013664/1-673 ---------- ---------- LCAYAWGHPK SLDQ-REDVR NCSSSPPYLP bmy_16242T0/1-764 HLKTPWPGLP GAATPGLSSS VVSCAWGRPK SLDL-REDVR NCSISPPYLP 151 200 ENSP00000360147/1-674 VTVVNTTMSL TALRQQMQTQ NLSAYIIPGT DAHMNEYIGQ HDERRAWITG ENSTTRP00000002002/1-672 VTVVNTTAQL TALRQQMHTQ NVSAYIVPDT DAHMSEYIGD YDKRRAWITG ENSBTAP00000013664/1-673 VTAVNTTAQL TALRQQMYTQ NLSAYIVPDT DAHMSEYIGE YDQRRAWITG bmy_16242T0/1-764 VTVVNTTAQL TALRQQMHTQ NLSAYIVPDT DAHMSEYISD YDKRRAWITG 201 250 ENSP00000360147/1-674 FTGSAGTAVV TMKKAAVWTD SRYWTQAERQ MDCNWELHKE VGTTPIVTWL ENSTTRP00000002002/1-672 FTGSAGIAVV TMGKAALWTD SRYWTQAERQ MDCNWELHKE VGTTPVVTWL ENSBTAP00000013664/1-673 FTGSAGVAVV TMEKASLWTD SRYWTQAERQ MDCNWELHKE VGTTPIVTWL bmy_16242T0/1-764 FTGSAGVAVV TMGKAALWTD SRYWTQAERQ MDCIWELHKE VGTTPVVTWL 251 300 ENSP00000360147/1-674 LTEIPAGGRV GFDPFLLSID TWESYDLALQ GSNRQLVSIT TNLVDLVWGS ENSTTRP00000002002/1-672 LTEIPVGGRV GFDPFLFSIN SWESYNVALR DSDRELVSIT VNLVDLLWGS ENSBTAP00000013664/1-673 LTEIPVGARV GVDPFLFSIN SWESYDKALQ DSDRELVSIT VNLVDLVWGS bmy_16242T0/1-764 LTEIPVGGRV GFDPFLFSIN SWESYNVALR DSDRELVSIT VNLVDLLWGS 301 350 ENSP00000360147/1-674 ERPPVPNQPI YALQEAFTGS TWQEKVSGVR SQMQKHQKVP TAVLLSALEE ENSTTRP00000002002/1-672 ERPPVPSEPI YALQEAFTGS SWQEKVSGIR SQMKKHREAP TAVLLSALDE ENSBTAP00000013664/1-673 ERPPVPSEPI YALQEAFTGS TWQEKVAGIR SQMQKHHKAP TAVLLSALDE bmy_16242T0/1-764 ERPPVPSEPI YALQEAFTGS SWQEKVSGIR SQMRKHREAP TAVLLSALDE 351 400 ENSP00000360147/1-674 TAWLFNLRAS DIPYNPFFYS YTLLTDSSIR LFANKSRFSS ETLSYLNSSC ENSTTRP00000002002/1-672 TAWLXXXXXX XXXXXXXXXX XXXXXXXXXX LFANKSRFSS KTLQYLNSSC ENSBTAP00000013664/1-673 TAWLFNLRGS DIPYNPFFYS YTLLTDSSIR LFANKSRFSS ETLQYLNSSC bmy_16242T0/1-764 TAWLFNLRSS DIPYNPFFYS YTLLTDSSIR LFANKSRFSS ETLQYLNSGC 401 450 ENSP00000360147/1-674 TGPMCVQIED YSQVRDSIQA YSLGDVRIWI GTSYTMYGIY EMIPKEKLVT ENSTTRP00000002002/1-672 TDSMCVQLED YGQVRDSVQA YTSGAVKIWI GTSYTSYGLY EVIPKEKLIA ENSBTAP00000013664/1-673 TGPLCVQVED YGQVRDSVQA YTSGDVKVWI GTSYTSYGLY EVIPKEKLLE bmy_16242T0/1-764 TGSMCVQLED YGQVRDSVQA YTSGVVKIWI GTSYTSYGLY EVIPKEKLIA 451 500 ENSP00000360147/1-674 DTYSPVMMTK AVKNSKEQAL LKASHVRDAV AVIRYLVWLE KNVPKGTVDE ENSTTRP00000002002/1-672 DTYSPVMVTK AVKNSKEQTL LRASHVRDAV AVIRYLVWLE ENVPKGTVDE ENSBTAP00000013664/1-673 DTYSPVMVTK AVKNSKEQTL LRASHVRDAV AVIRYLVWLE KNVPQGTVDE bmy_16242T0/1-764 DTYSPVMVTK AVKNSKEQTL LRASHVRDAV AVIRYLVWLE ENVPKGTVDE 501 550 ENSP00000360147/1-674 FSGAEIVDKF RGEEQFSSGP SFETISASGL NAALAHYSPT KELNRKLSSD ENSTTRP00000002002/1-672 FSGAELLEKF RGEEEFFSGS SFETISASGL NAALAHYSPT KELHRKLSSD ENSBTAP00000013664/1-673 FSGAEQLEKF RGEEEFFSGS SFETISASGL NAALAHYSPT KELHRKLSSD bmy_16242T0/1-764 FSGAELLEKF RGEEEFFSGS SFETISASGL NAALAHYSPT KELHRKLSSD 551 600 ENSP00000360147/1-674 EMYLLDSGGQ YWDGTTDITR TVHWGTPSAF QKEAYTRVLI GNIDLSRLIF ENSTTRP00000002002/1-672 EMYLLDSGGQ YWDGTTDITR TVHWGTPSAF QKEAYTRVLI GNIDLSRLVF ENSBTAP00000013664/1-673 EIYLVDSGGQ YWDGTTDVTR TVHWGTPSAF QKEAYTRVLI GNIDLSRLVF bmy_16242T0/1-764 EMYLLDSGGQ YWDGTTDITR TVHWGTPSAF QKEAYTRVLI GNIDLSRLVF 601 650 ENSP00000360147/1-674 PAATSGRMVE AFARRALWDA GLNYGHGTGH GIGNFLCVHE WPVGFQSNNI ENSTTRP00000002002/1-672 PAATSGRMVE AFARRALWDV GLNYGHGTGH GIGNFLCVHE WPVGFQSGNI ENSBTAP00000013664/1-673 PAATSGRMVE AFARKALWDV GLNYGHGTGH GIGNFLCVHE WPVGFQSSNI bmy_16242T0/1-764 PAATSG---- ---------- ---------- ---------- -PVGFQSGNI 651 700 ENSP00000360147/1-674 AMAKGMFTSI EPGYYKDGEF GIRLEDVALV VEAKTK---- ---------- ENSTTRP00000002002/1-672 AMAKGMFTSI EPGYYHDGEF GIRL-DVALV VEAKT----- ---------- ENSBTAP00000013664/1-673 AMAKGMFTSI EPGYYLDGEF GIRLEDVALV VEAKTK---- ---------- bmy_16242T0/1-764 AMAKGMFTSI EPGYYQDGEF GIRLEDVALV VEAKTKPSSS PSLTSCLPTF 701 750 ENSP00000360147/1-674 ------YPGS YLTFEVVSFV PYDRNLIDVS LLSPEHLQYL NRYYQTIREK ENSTTRP00000002002/1-672 ------YPGT YLTFEVVSLV PYDRNLIDVS LLSPEQLQYL NRYYQTIREK ENSBTAP00000013664/1-673 ------YPGT YLTFEVVSLV PYDRNLIDVS LLSPEQLQYL NRYYQIIREK bmy_16242T0/1-764 PVPPPQYPGT YLTFEVVSLV PYDRNLIDVS LLSPEQLQYL NRYYQTIRET 751 800 ENSP00000360147/1-674 VGPELQRRQL LEEFEWLQQH TEPLAARAPD TASWASVLVV STLAILGWSV ENSTTRP00000002002/1-672 VGPELQRRQL LKEFSWLQRH TEPLASRAAP TASLAPLMTV SALTILSWSV ENSBTAP00000013664/1-673 VGPELQRRQL QEEFSWLQWH TEPLTARAAP TASLAPLVTV SALAILGWSV bmy_16242T0/1-764 VGPELQRRQL PEEFSWLQRH TEPLAARAAP TASLAPLMTV SALTILSWSV