KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:51:06 2014 Check: 00 .. Name: ENSP00000242839/1-1465 Len: 1528 Check: 8563 Weight: 1.00 Name: ENSBTAP00000013674/1-1505 Len: 1528 Check: 9911 Weight: 1.00 Name: bmy_09782T0/1-1272 Len: 1528 Check: 4932 Weight: 1.00 Name: BACU015783/1-1503 Len: 1528 Check: 1964 Weight: 1.00 Name: ENSTTRP00000011369/1-1432 Len: 1528 Check: 8200 Weight: 1.00 // 1 50 ENSP00000242839/1-1465 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000013674/1-1505 MERAGDQTPG NPEPSSLATL GDPQVTLLSV HKQWSFKRSP GTGGSSRPVI bmy_09782T0/1-1272 ---------- ---------- ---------- ---------- --------ML BACU015783/1-1503 MERTGGQTPG SPEPSFLVTL GDPQVTLLSV HKRWSFRRSP RATGSSRPVI ENSTTRP00000011369/1-1432 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000242839/1-1465 ---------- --MPEQERQI TAREGASRKI LSKLSLPTRA WEPAMKKSFA ENSBTAP00000013674/1-1505 SEEECPPPSE EGEFSQKVLN GSEEISSKQI LSKLS----- -QPAMKQSFA bmy_09782T0/1-1272 FYQACHACSM RVSPIVLSFP TETFMPSTKI LPKLSWPARA WEPTMKQSFA BACU015783/1-1503 SAEECSPPSE KGEFSQKVLT RTQEVSSKQI LPKLSWPARA WEPTMKQSFA ENSTTRP00000011369/1-1432 ---------- ---------- ---------I LPKISWPART WEPTMKQSFA 101 150 ENSP00000242839/1-1465 FDNVGYEGGL DGLGPSSQVA TSTVRILGMT CQSCVKSIED RISNLKGIIS ENSBTAP00000013674/1-1505 FDNNGYEDDL DGVRP-SHTA TGTINIVGMT CQSCVKSIEG RVSSLKGIVS bmy_09782T0/1-1272 FDNNGYEDGL DGVCP-SQTA TGTISIVGMT CQSCVKSIEG RVSSLKGIMS BACU015783/1-1503 FDNSGYEDGL DGARP-SQTA AGTLSIVGMT CQSCVRSIEG RLSSLTGIVS ENSTTRP00000011369/1-1432 FDNNGYEDGL DGVHP-SQTA TGTISIVGMT CQSCVKSIEG RVSSLKGIVS 151 200 ENSP00000242839/1-1465 MKVSLEQGSA TVKYVPSVVC LQQVCHQIGD MGFEASIAEG KAASWPSRSL ENSBTAP00000013674/1-1505 IKVSLEQGSA EVRYVPSVVS LVQICHQIED MGFQASVAEG KATSWPSRVS bmy_09782T0/1-1272 VKVSLEQGSA MVGYVPSVLS LPQVCCQIED MGFQATVAEG KAASRPSRFS BACU015783/1-1503 VKVSLEQGSA MVRYVPSVLS LPQVCCQIED MGFQATVAEG KSASRPSRFS ENSTTRP00000011369/1-1432 VKVSLEQGSA MVRYMPSVLS LPQVCCQIED MGFQATVAEG KAASRPSRFS 201 250 ENSP00000242839/1-1465 PAQEAVVKLR VEGMTCQSCV SSIEGKVRKL QGVVRVKVSL SNQEAVITYQ ENSBTAP00000013674/1-1505 PASEAMVKLR VEGMTCQSCV SSIEGKIGKL QGVLRVRVSL SNQEAVITYQ bmy_09782T0/1-1272 PALEAVVKLR VEGMTCQSCV SSIEGKIGKL QGVVRVRVSL SNQEAVITYQ BACU015783/1-1503 PALEAVVKLR VEGMTCRSCV SSIEGKIGKL QGVLRVRVSL SNQEAVITYQ ENSTTRP00000011369/1-1432 PALEAVVKLR VEGMTCQSCV SSIEGKIGKL QGVMRVRVSL SNQEAVITYQ 251 300 ENSP00000242839/1-1465 PYLIQPEDLR DHVNDMGFEA AIKSKVAPLS LGPIDIERLQ STNPKRPLSS ENSBTAP00000013674/1-1505 PYLIQPQDLR DHITDMGFEA VIKNKVAPVS LGPIDVRRLQ STLSAAPPAP bmy_09782T0/1-1272 PYLIQPQDLR DRVNDMGFEA VIKNKVAPVS LGPIDIRQLQ RIHPKAPLAS BACU015783/1-1503 PYLIQPQDLR DRVNDMGFEA VIKNKVAPVS LGPIDIRQLQ RTHPKAPPAS ENSTTRP00000011369/1-1432 PYLIQPQDLR DHVNDMGFEA VIKNKVAPVS LGPIDIRQLQ RSHPKAPQAS 301 350 ENSP00000242839/1-1465 ANQNFNNSET LGHQGSHVVT LQLRIDGMHC KSCVLNIEEN IGQLLGVQSI ENSBTAP00000013674/1-1505 VNQNDNNSET PGGQG---IP LHLRVDGMHC KSCVLNIEDN IGRLPGVQSI bmy_09782T0/1-1272 VNQNGNNSES SGSQG---VP LYLRVDGMHC KSCVLNIEEN IGQQPGVQSI BACU015783/1-1503 VNQNGNNSES SGSRG---VP LYLRVDGMHC KSCVLNIEEN IGQQPGVQSI ENSTTRP00000011369/1-1432 INQNGNNSET SGSQG---VP LYLRVDGMHC KSCVLNIEEN IGQQPGVQSI 351 400 ENSP00000242839/1-1465 QVSLENKTAQ VKYDPSCTSP VALQRAIEAL PPGNFKVSLP DGAEGSGTDH ENSBTAP00000013674/1-1505 HVSLESRTAQ VQYDPSLVSP GALQRAIEAL PPGNFKVSLP NGVEGSGPDS bmy_09782T0/1-1272 QVSLENRTAQ VQYDPSRISP GTLQRAIEAL PPGNFKVSLP AGAEGSGTDT BACU015783/1-1503 QVSLENRTAQ VQYDPSRISP GTLQRAIEAL PPGNFKVSLP AGAEGSGTDT ENSTTRP00000011369/1-1432 QVSLENGTAQ VQYDPSRISP GTLQRAIEAL PPGNFKVSLP DGAEGSGTDT 401 450 ENSP00000242839/1-1465 RSSSSHSPGS PPRNQVQGTC STTLIAIAGM TCASCVHSIE GMISQLEGVQ ENSBTAP00000013674/1-1505 R--SPPASSA P--------- CTVMLAIAGM TCKSCVQSIE GLISQRAGVH bmy_09782T0/1-1272 R--SPQAPGV P--------- CAVVLAIAGM TCESCVQSVE GLVSQREGVQ BACU015783/1-1503 R--SPQSPGV P--------- CAAVLAIAGM TCESCVRSVE GLVSQREGVQ ENSTTRP00000011369/1-1432 R---PPGAGM R--------- CAAVLAIAGM TCESCVQSIE GLVSQREGVQ 451 500 ENSP00000242839/1-1465 QISVSLAEGT ATVLYNPSVI SPEELRAAIE DMGFEASVVS ESCSTNPLGN ENSBTAP00000013674/1-1505 QISVFLAEGT AVVLYDPSRT HPEELRAAVE DMGFEASILA ENCSSNHIGN bmy_09782T0/1-1272 RISVSLAEGT GTVLYDPSLT HPAELRAAVE DMGFEASVL- ---------- BACU015783/1-1503 RVSVSLAEGT GTVLYDPSLT HPAELQAAVE DMGFEASVLA ENRSSNHAGN ENSTTRP00000011369/1-1432 RISVSLAEGT GTVLYDPSLT HPAELRAAVE DMGFEASVLA ENCSSTHAGN 501 550 ENSP00000242839/1-1465 HSAGNSMVQT TDGTPTSVQE VAPHTGRLPA NHAPDILAKS PQSTRAVAPQ ENSBTAP00000013674/1-1505 HSSGSAVGHV AAGTPVPVQG GTPQPGELHT NHIPRQSPKS LPASTTVAPK bmy_09782T0/1-1272 ---------- ---------- ---------- ---------- ---------- BACU015783/1-1503 HSAGSATGHT AAGTPVSVQD TTPQPGGLPT NHNPGLVSKS PRASETAAPQ ENSTTRP00000011369/1-1432 HSAGSATGHT AAGAPVSVQN GTPQPGGLPT NHNPGLVSKS PRASETAAPQ 551 600 ENSP00000242839/1-1465 KCFLQIKGMT CASCVSNIER NLQKEAGVLS VLVALMAGKA EIKYDPEVIQ ENSBTAP00000013674/1-1505 KCFLQISGMT CASCVSNIER NLQKEPGILS VLVALMAGKA EVKYNPEAIQ bmy_09782T0/1-1272 ---------- ---------- -----AGILS VLVALMAGKA EVKYNPEVIQ BACU015783/1-1503 KCFLQVRGMT CASCVSNIER NLQKEAGILS VLVALMAGKA EVKYNPEVIQ ENSTTRP00000011369/1-1432 KCFLQVRGMT CASCVSNIER NLQKEAGILS VLVALMAGKA EVKYNPEVIQ 601 650 ENSP00000242839/1-1465 PLEIAQFIQD LGFEAAVMED YAGSDGNIEL TITGMTCASC VHNIESKLTR ENSBTAP00000013674/1-1505 PLEIAKLIQD LGFEAAVMED YTGSDGDLEL MITGMTCASC VHNIESKLRR bmy_09782T0/1-1272 PLEITQLIQD LGFEAEVMED YAGSDGDLEL TITGMTCTSC VHNIESKLTR BACU015783/1-1503 PLEITQLIQD LGFEAEVMED YAGSDGDLEL TITGMTCTSC VHNIESKLTR ENSTTRP00000011369/1-1432 PLEIAQLIQD LGFKAEVMED CAGSDGDLEL IITGMTCTSC VHNIESKLTR 651 700 ENSP00000242839/1-1465 TNGITYASVA LATSKALVKF DPEIIGPRDI IKIIEEIGFH ASLAQRNPNA ENSBTAP00000013674/1-1505 TEGITYASVA LATSKAHVKF DPEIIGPRDI VKLIEEIGFR ASLAQRIPNA bmy_09782T0/1-1272 TNGITYASVA LATSKAHVKF DPEIIGPRDI VKIIEARGLQ IGVEAMPPRA BACU015783/1-1503 TNGITYASVA LATSKAHVKF DPEIIGPRDI VKIIEEIGFH VSLAQRNPNA ENSTTRP00000011369/1-1432 TNGITYASVA LATSKAHVKF DPEMIGPRDI VKIIEEIGFH VSLAQRNPSA 701 750 ENSP00000242839/1-1465 HHLDHKMEIK QWKKSFLCSL VFGIPVMALM IYMLIPSNEP HQSMVLDHNI ENSBTAP00000013674/1-1505 HHLDHKVEIK QWKNSFLCSL VFGIPVMGLM IYMLIPSHEP -QSTVLDHNV bmy_09782T0/1-1272 SRSPWLEFCG WWKKSFLCSL VFGIPVMGLM IYMLIPSHEP HESMLLDHNI BACU015783/1-1503 HHLDHKVEIK QWKKSFLCSL VFGVPVMGLM IYMLIPSHEP HESMPLDRNI ENSTTRP00000011369/1-1432 HHLDHKLEIK QWKKSFLCSL VFGIPVMGLM IYMLIPSHEP HESMLLDHNI 751 800 ENSP00000242839/1-1465 IPGLSILNLI FFILCTFVQL LGGWYFYVQA YKSLRHRSAN MDVLIVLATS ENSBTAP00000013674/1-1505 IPGLSILNLI FFILCTFVQF LGGWYFYVQA YKSLRHGMAN MDVLIVLATS bmy_09782T0/1-1272 IPGLSILNLV FFILCTFVQF LGGWYFYVQA YKSLRHRAAN MDVLIVLATS BACU015783/1-1503 IPGLSILNLV FFILCTFVQF LGGWYFYVQA YKSLRHRTAN MDVLIVLATS ENSTTRP00000011369/1-1432 IPGLSILNLV FFILCTFVQF LGGWYFYVQA YKSLRHRAAS MDVLIVLATS 801 850 ENSP00000242839/1-1465 IAYVYSLVIL VVAVAEKAER SPVTFFDTPP MLFVFIALGR WLEHLAKSKT ENSBTAP00000013674/1-1505 VAYVYSLVIL VVAVAEKAER SPVTFFDTPP MLFVFIALGR WLEHVVKSKT bmy_09782T0/1-1272 IAYVYSLVIL MVAIAEKAER SPVTFFDTPP MLFVFIALGR WLEHVAKSKT BACU015783/1-1503 IAYVYSLVIL MVAIAEKAER SPVTFFDTPP MLFVFIALGR WLEHVAKSKT ENSTTRP00000011369/1-1432 IAYVYSLVIL VVAIAEKAER SPVTFFDTPP MLFVFIALGR WLEHVAKSKT 851 900 ENSP00000242839/1-1465 SEALAKLMSL QATEATVVTL GEDNLIIREE QVPMELVQRG DIVKVVPGGK ENSBTAP00000013674/1-1505 SEALAKLMSL QATEATVVTL GEDNVIIREE QVPMELVQRG DIIKVVPGGK bmy_09782T0/1-1272 SEALAKLMSL QATEATVVTL GEDNLIIREE QVPMELVQRG DIIKVVPGGK BACU015783/1-1503 SEALAKLMSL QATEATVVTL GEDNLIIREE QVPMELVQRG DVIKVVPGGK ENSTTRP00000011369/1-1432 SEALAKLMSL QATEATVVTL GEDNLIVREE QVPMELVQRD DIIKVVPGGK 901 950 ENSP00000242839/1-1465 FPVDGKVLEG NTMADESLIT GEAMPVTKKP GSTVIAGSIN AHGSVLIKAT ENSBTAP00000013674/1-1505 FPVDGKVLEG NTMADESLIT GEAMPVTKKP GSMVIAGSMN AHGSVLVTAT bmy_09782T0/1-1272 FPVDGKVLEG STMADESLIT GEAMPVTKKP GSTVIAGSLN AHGSVLITAT BACU015783/1-1503 FPVDGKVLEG STMADESLIT GEAMPVTKKP GSTVIAGSLN AHGSVLITAT ENSTTRP00000011369/1-1432 FPVDGRVLEG STMADESLIT REAMPVTKKP GSTVIAGSMN AHGSVLITAT 951 1000 ENSP00000242839/1-1465 HVGNDTTLAQ IVKLVEEAQM SKAPIQQLAD RFSGYFVPFI IIMSTLTLVV ENSBTAP00000013674/1-1505 HVGNDTTLAQ IVKLVEEAQM SKAPIQQLAD RFSGYFVPFI IIISTVTLVV bmy_09782T0/1-1272 HVGNDTTLAQ IVKL------ --APIQQLAD RFSGYFVPFI IITSTLTLVV BACU015783/1-1503 HVGNDTTLAQ IVKLVEEAQM SKAPIQQLAD RFSGYFVPFI IITSTLTLVV ENSTTRP00000011369/1-1432 HVGNDTTLAQ IVKLVEEAQM SKAPIQQLAD RFSGYFVPFI VIVSTLTLVV 1001 1050 ENSP00000242839/1-1465 WIVIGFIDFG VVQRYFPNPN KHISQTEVII RFAFQTSITV LCIACPCSLG ENSBTAP00000013674/1-1505 WIGIGFTDFG VVQKYFPVPS KGISQAEVVL RFAFQTSITV LCIACPCSLG bmy_09782T0/1-1272 WIVIGFIDFG VVQKYFPTSS KHISQAEVVL RFAFQTSITV LCIACPCSLG BACU015783/1-1503 WIVIGFIDFG VVQKYFPTSS KHISQAEVVL RFAFQTSITV LCIACPCSLG ENSTTRP00000011369/1-1432 WIAIGFIDFG VVQKYFPTSS KHISQAEVVL RFAFQTSITV LCIACPCSLG 1051 1100 ENSP00000242839/1-1465 LATPTAVMVG TGVAAQNGIL IKGGKPLEMA HKIKTVMFDK TGTITHGVPR ENSBTAP00000013674/1-1505 LATPTAVMVG TGVAAQNGIL IKGGKPLEMA HKIKTVMFDK TGTITHGVPK bmy_09782T0/1-1272 LATPTAVMVG TGVAAQNGIL IKGGKPLEMA HKIKTVMFDK TGTITHGVPR BACU015783/1-1503 LATPTAVMVG TGVAAQNGIL IKGGKPLEMA HKIKTVMFDK TGTITHGVPR ENSTTRP00000011369/1-1432 LATPTAVMVG TGVAAQNGIL IKGGKPLELA HKIKTVMFDK TGTITHGVPK 1101 1150 ENSP00000242839/1-1465 VMRVLLLGDV ATLPLRKVLA VVGTAEASSE HPLGVAVTKY CKEELGTETL ENSBTAP00000013674/1-1505 VSRVLLLVDV ATLPLRKVLA VVGTAEASSE HPLGVAVTRY CKEELGTETL bmy_09782T0/1-1272 VMRVLLLVDV ATLPLRKVLA VVGTAEASSE HPLGVAVTRY CKEELGTETL BACU015783/1-1503 VMRVLLLVDV ATLPLRKVLA VVGTAEASSE HPLGVAVTRY CKEELGTETL ENSTTRP00000011369/1-1432 VMRVLLLVDV ATLPLRKVLA VVGTAEASSE HPLGVAVARY CKEELGTETL 1151 1200 ENSP00000242839/1-1465 GYCTDFQAVP GCGIGCKVSN VEGILAHSER PLSAPASHLN EAGSLPAEKD ENSBTAP00000013674/1-1505 GCCTDFQAVP GCGISCKVSS VESILAQGER LQGPLTTHLN RVGSNPTETD bmy_09782T0/1-1272 GYCTDFQAVP GCGIGCKVSN VEGILAQGER PRGQPTGHLN GVSSVPVETD BACU015783/1-1503 GYCTDFQAVP GCGIGCKVSN VEGILAQDER PRGQPTAHLN GVSSVPVETD ENSTTRP00000011369/1-1432 GYCTDF-AVP GCGIGCKVSN VEGILAQGER PRGQPTAHLN GVSSIPMETD 1201 1250 ENSP00000242839/1-1465 AVPQTFSVLI GNREWLRRNG LTISSDVSDA MTDHEMKGQT AILVAIDGVL ENSBTAP00000013674/1-1505 AATQTFSVLI GNREWMRRNG LTVTSDVRDA MTDHEMKGQT AILVAIDGVL bmy_09782T0/1-1272 AVPQTFSVLI GSREWMRRNG LTVTSDISDA MTDHETKGQT AILVAIDGVL BACU015783/1-1503 AVPQTFSVLI GNREWMRRNG LTVTSDISDA MTDHETKGQT AILVAIDGVL ENSTTRP00000011369/1-1432 AVPQTFSVLI GSREWMRRNG LTVTSDISDA MTDHETKGQT AILVAIDGVL 1251 1300 ENSP00000242839/1-1465 CGMIAIADAV KQEAALAVHT LQSMGVDVVL ITGDNRKTAR AIATQVGINK ENSBTAP00000013674/1-1505 CGMIAIADSV KQEAALAVHT LKSMGVDVVL ITGDNRKTAR AIATQVGINK bmy_09782T0/1-1272 CGMIAIADAV KQEAALAVHT LKSMGVDVVL ITGDNRKTAR AIATQVGINK BACU015783/1-1503 CGMIAIADAV KQEAALAVHT LKSMGVDVVL ITGDNRKTAR AIATQVGINK ENSTTRP00000011369/1-1432 CGMIAIADAV KQEAALAVHT LKSMGVDVVL ITGDNRKTAR AIATQVGINK 1301 1350 ENSP00000242839/1-1465 VFAEVLPSHK VAKVQELQNK GKKVAMVGDG VNDSPALAQA DMGVAIGTGT ENSBTAP00000013674/1-1505 VFAEVLPSHK VAKVQELQNQ GKRVAMVGDG VNDSPALAQA DVGIAIGTGT bmy_09782T0/1-1272 VFAEVLPSHK VAKVQELQNE GKRVAMVGDG VNDSPALARA DVGIAIGTGT BACU015783/1-1503 VFAEVLPSHK VAKVQELQNE GKRVAMVGDG VNDSPALARA DVGIAIGTGT ENSTTRP00000011369/1-1432 VFAEVLPSHK VAKVQELQNE GKRVAMVGDG VNDSPALAQA DVGIAIGTGT 1351 1400 ENSP00000242839/1-1465 DVAIEAADVV LIRNDLLDVV ASIHLSKRTV RRIRINLVLA LIYNLVGIPI ENSBTAP00000013674/1-1505 DVAIEAADVV LIRNDLLDVV ASIHLSRRTV WRIRLNLVLA LIYNLIGIPV bmy_09782T0/1-1272 DVAIEAADVV LIRNDLLDVV ASIHLSKRTV QRIRLNLVLA LIYNLVGIPI BACU015783/1-1503 DVAIEAADVV LIRNDLLDVV ASIHLSKRTV QRIRLNLVLA LIYNLVGIPI ENSTTRP00000011369/1-1432 DVAIEAADVV LIRNDLLDVV ASIHLSKRTV QRIRLNLVLA LIYNLVGIPI 1401 1450 ENSP00000242839/1-1465 AAGVFMPIGI VLQPWMGSAA MAASSVSVVL SSLQLKCYKK PDLERYEAQA ENSBTAP00000013674/1-1505 AAGVFIPIGV VLQPWMGSAA MAASSVSVVL SSLQLKCYRK PDLARYEAQA bmy_09782T0/1-1272 AAGAF----- ---------- ---------- ---------- ---------- BACU015783/1-1503 AAGVFMPIGV VLQPWMGSAA MAASSVSVVL SSLQLKCYRK PELAWYEAQA ENSTTRP00000011369/1-1432 AAGVFMPIGV VLQPWMGSAA MAASSVSVVL SSLQLKCYRK PELAWYEAQA 1451 1500 ENSP00000242839/1-1465 HGHMKPLTAS QVSVHIGMDD RWRDSPRATP WDQVSYVSQV SLSSLTSDKP ENSBTAP00000013674/1-1505 HGSMKPLSAS QVSVRVGMDD RRRDSPRASA WDQVSYVSQV SLSPLKSDKL bmy_09782T0/1-1272 ---------- ---------- ---------- WEL------- --------RM BACU015783/1-1503 QGRMKPLAES QVSVHVGMDD RRRDSPRAAP WDQVRYISQV SLSSLKSDGL ENSTTRP00000011369/1-1432 QGRMKPLTES QVSVHIGMDN RRRDSPRAAP WDQVRYISQV SLSSLKSDGL 1501 1550 ENSP00000242839/1-1465 SRHSAAADDD GDKWSLLLNG RDEEQYI- ENSBTAP00000013674/1-1505 SRHSGAADDR GDKWSLLLND RDEEQGI- bmy_09782T0/1-1272 QNSVCGKGES GSQRP----G PDS----- BACU015783/1-1503 SRHSAAADDE GGASSPRS-- -------- ENSTTRP00000011369/1-1432 SRHGTAAGDE GSKWPPLLSD RDEEPCVR