KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 16:51:09 2014 Check: 00 .. Name: ENSBTAP00000013690/1-355 Len: 487 Check: 2926 Weight: 1.00 Name: ENSTTRP00000002183/1-450 Len: 487 Check: 4277 Weight: 1.00 Name: bmy_17282T0/1-487 Len: 487 Check: 4998 Weight: 1.00 Name: BACU002858/1-450 Len: 487 Check: 3945 Weight: 1.00 // 1 50 ENSBTAP00000013690/1-355 MTLLASVVSC SRVRLFACFL RLGSQQASPL QLHTGASLAA KSYYEVLVLG ENSTTRP00000002183/1-450 MTPLAAVVSG PRVRLFACLL RLGCQQAKPL QLHTGARLAA KNHYEVLVLG bmy_17282T0/1-487 MTQLAAVVSG PRVRLFACFL RLGCQQAKPL QLHTGASLAA KNHYEVLVLG BACU002858/1-450 MTPLAAVVSG PRVRLFACFL RLGCQQAKPL QLHTGASLAA KNHYEVLVLG 51 100 ENSBTAP00000013690/1-355 GGSGGISMAA RMKRKVGAEN VAIVEPSETH FYQPIWTLVG AGAKPLSSSG ENSTTRP00000002183/1-450 GGSGGITMAA RMKRKVGAEN VAIVEPSERH FYQPIWTLVG AGAKPLASSG bmy_17282T0/1-487 GGSGGITMAA RMKRKVGAEN VAIVEPSERH FYQPIWTLVG AGAKPLASSG BACU002858/1-450 GGSGGITMAA RMKRKVGAEN VAIIEPSERH FYQPIWTLVG AGAKPLASSG 101 150 ENSBTAP00000013690/1-355 RPTANVIPSG VEWIKARVVD LNPDKNCIHT DDDKKISYKY LIIALGIQLD ENSTTRP00000002183/1-450 RPTASVIPSG VEWIKARVVD LNPDKNCIHT DNDKEISYKY LIIALGIQLD bmy_17282T0/1-487 RPTASVIPSG VEWIKARVVD LNPDKNCIHT DNDKEISYKY LIIALGIQLD BACU002858/1-450 RPTASVIPSG VEWIKARVVD LNPDKNCIHT DNDKEISYKY LIIALGIQLD 151 200 ENSBTAP00000013690/1-355 YEKIKGLPEG FAHPKIGSNY SVRTVEKTWK ALQDFKEGNA IFTFPNTPVK ENSTTRP00000002183/1-450 YEKIKGLPEG FAHPQIGSNY SVRTVEKTWK ALQDFKEGNA IFTFPNTPVK bmy_17282T0/1-487 YEKIRGLPEG FAHPKIGSNY SVKTVEKTWK ALQDFKEGNA IFTFPNTPVK BACU002858/1-450 YEKIKGLPEG FAHPKIGSNY SVKTVEKTWK ALQDFKEGNA IFTFPNTPVK 201 250 ENSBTAP00000013690/1-355 CAGAPQKIMY LSEAYFRKTG KRPKANIIFN TSLGAIFGVK KYADALQKII ENSTTRP00000002183/1-450 CAGAPQKIMY LSEAYFRKTG KRSKANIIFN TSLGAIFGVK KYADALQEII bmy_17282T0/1-487 CAGAPQKIMY LSEAYFRKTG KRSKANIIFN TSLGAIFGVK KYAEALQEII BACU002858/1-450 CAGAPQKIMY LSEAYFRKTG KRSKANIIFN TSLGAIFGVK KYAEALQEII 251 300 ENSBTAP00000013690/1-355 QERALTVNYK QNLIEVRADK QEAVFENLDK PGETQVISYE MLHVTPPMSP ENSTTRP00000002183/1-450 RERNLTVNYK QNLIEVRADK QEAVFENLDK PGETQVISYE MLHVTPPMSP bmy_17282T0/1-487 RERNLTVNYK QNLIEVRADK QEAVFENLDK PGETQVISYE MLHVTPPMSP BACU002858/1-450 RERNLTVNYK QNLIEVRADK QEAVFENLDK PGETQVISYE MLHVTPPMSP 301 350 ENSBTAP00000013690/1-355 PDVLKTSPVA DAAGWVDVDK DTLQHKRYPN VFGIG----- --------LY ENSTTRP00000002183/1-450 PDVLKTSPVA DAAGWVDVDK DTLQHKRYPN VFGIGDCTNL PTSKTAAAVA bmy_17282T0/1-487 PDVLKTSPVA DAAGWVDVDK DTLQHKRYPN VFGIGDCTNL PTSKTAAAVA BACU002858/1-450 PDVLKTSPVA DAAGWVDVDK DTLQHKRYPN VFGIGDCTNL PTSKTAAAVA 351 400 ENSBTAP00000013690/1-355 QPADIKDR-- ---------C RRS-----CP VRNT------ ---------- ENSTTRP00000002183/1-450 AQSGILDRTI SLIMKNQTPV KKYDGYTSCP LVTGYNRVIL AEFDYNAQPL bmy_17282T0/1-487 AQSGILDRTI SLIMKNQTPV KKYDGYTSCP LVTGYNRVVL AEFDYNAQPL BACU002858/1-450 AQSGILDRTI SLIMKNQTPV KKYDGYTSCP LVTGYNRVIL AEFDYNAQPL 401 450 ENSBTAP00000013690/1-355 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000002183/1-450 ETFPFDQSKE RLSMYLMKAD MMPFLYWNMM LRGYWGGPAF LRKLFHLGRS bmy_17282T0/1-487 ETFPFDQSKE RLSMYLMKAD MMPFLYWNVM LRGYWGGPAF LRKLFHLGAK BACU002858/1-450 ETFPFDQSKE RLSMYLMKAD MMPFLYWNVM LRGYWGGPAF LRKLFHLGRS 451 500 ENSBTAP00000013690/1-355 ---------- ---------- ---------- ------- ENSTTRP00000002183/1-450 ---------- ---------- ---------- ------- bmy_17282T0/1-487 DGSASGWLGG MAIHPWMAPG PKSQPLIDRE QHEELKI BACU002858/1-450 ---------- ---------- ---------- -------