KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 16:51:11 2014 Check: 00 .. Name: ENSP00000415078/1-758 Len: 923 Check: 7967 Weight: 1.00 Name: ENSBTAP00000013697/1-763 Len: 923 Check: 3285 Weight: 1.00 Name: ENSTTRP00000005452/1-746 Len: 923 Check: 6617 Weight: 1.00 Name: bmy_15763T0/1-724 Len: 923 Check: 6838 Weight: 1.00 // 1 50 ENSP00000415078/1-758 -------MGR DTRSRSRSAG RRGRRRQSQS GSRSRSR--- -SHGRRNRRR ENSBTAP00000013697/1-763 PSPPSQPMGR DTRSRSRSAG RRGRRQRSWS GNRSRSR--S GSHGRRNRRS ENSTTRP00000005452/1-746 ---------- ---------- ---------- ---------- ---------- bmy_15763T0/1-724 -------MGR GTRSRSRSAG RRGRRQRSRS GSRSRSRSWS GSHGRRNRRR 51 100 ENSP00000415078/1-758 REDEGRRRRR RRSRERRSDS EEERW-QRSG MRSRSPPRPK WHSRDGSSQS ENSBTAP00000013697/1-763 RDDEGRRRRR RRSRDRRSDS EEER--PRRG RQTRSPSPAH RRAQDHSSQS ENSTTRP00000005452/1-746 ---------- ---------- ---------- ---------- ---------- bmy_15763T0/1-724 RDDEG--RGR RRSWERRSDS DEERWRRRRG RQSRSPPPAH RRSQDRSSQS 101 150 ENSP00000415078/1-758 DSGEE---QS RGQWARRRRR AR--SWSPSS SASSSASPGR SQSPR-AAAA ENSBTAP00000013697/1-763 DSSDEQQHQQ QGQWARRQRR QRTCSWSPGS SASSSASRDH SQSPREAAAA ENSTTRP00000005452/1-746 ---------- ---------- ---------- ---------- ---------- bmy_15763T0/1-724 DSGDERQQQR RRRWA-HQWQ QRTHSWSPSS SASSSASPAH SQSPR-EAAA 151 200 ENSP00000415078/1-758 ALSQQQSLQE RLRLREERKQ QEELMKAFET PEEKRARRLA KKEAKERKKR ENSBTAP00000013697/1-763 ALSQQQSLQE RLRLREERKQ QEELMKAFET PEEKRARRLA KKEAKERKKR ENSTTRP00000005452/1-746 ---------- --------KQ QEELMKAFET PEEKRARRLA KKEAKERKQR bmy_15763T0/1-724 VLSRRRGLQE RLRLREERKQ QEELLKAFET PEEKRARRLA KKEAKERKKR 201 250 ENSP00000415078/1-758 EKMGWGEEYM GYTNTDNPFG DNNLLGTFIW NKALEKKGIS HLEEKELKER ENSBTAP00000013697/1-763 EKMGWGEEYM GYTNTDNPFG DNNLLGTFIW NKALEKKGIS HLEEKELKER ENSTTRP00000005452/1-746 EKMGWGEEYM GYTNTDNPFG DNNLLGTFIW NKALEKKGIS HLEEKELKER bmy_15763T0/1-724 EKMGWGEEYM GYTNTDNPFG DNNLLGTFIW N--------- ---------- 251 300 ENSP00000415078/1-758 NKRIQEDNRL ELQKVKQLRL EREREKAMRE QELEMLQREK EAEHFKTWEE ENSBTAP00000013697/1-763 NKRIQEDNRL ELQKVKQLRL EREREKAMRE QELEMLQREK EAEHFKTWEE ENSTTRP00000005452/1-746 NKRIQEDNRL ELQKVKQLRL EREREKAMRE QELELLQREK EAEHFKTWEE bmy_15763T0/1-724 ---------- ---KVKQLRL EREREKAMRE QELEMLQREK EAEHFKTWEE 301 350 ENSP00000415078/1-758 QEDNFHLQQA KLRSKIRIRD GRAKPIDLLA KYISAEDDDL AVEMHEPYTF ENSBTAP00000013697/1-763 QEDNFHLQQA KLRSKIRIRD GRAKPIDLLA KYISAEDDDL AVEMHEPYTF ENSTTRP00000005452/1-746 QEDHFHLQQA KLRSKIRIRD GRAKPIDLLA KYISAEDDDL AVEMHEPYTF bmy_15763T0/1-724 QEDNFHLQQA KLRSKIRIRD GRAKPIDLLA KYISAEDDDL AVEMHEPYTF 351 400 ENSP00000415078/1-758 LNGLTVADME DLLEDIQVYM ELEQGKNADF WRDMTTITED EISKLRKLEA ENSBTAP00000013697/1-763 LNGLTVADME DLLEDIQVYM ELEQGKNADF WRDMTIITED EISKLRKLEA ENSTTRP00000005452/1-746 LNGLTVADME DLLEDIQVYM ELEQGKNADF WRDMTIITED EIAKLRKLEA bmy_15763T0/1-724 LNGLTVADME DLLEDIQVYM ELEQGKNADF WRDMTIITED EIAKLRKLEA 401 450 ENSP00000415078/1-758 SGKGPGERRE GVNASVSSDV QSVFKGKTYN QLQVIFQGIE GKIRAGGPNL ENSBTAP00000013697/1-763 SGKGPGERRE GVNASVSSDV QSVFKGKTYS QLQVIFQGIE GKIRAGGPNL ENSTTRP00000005452/1-746 SGKGPGERRE GVNASVSSDV QSVFKGKTYS QLQVIFQGIE GKIRAGGPNL bmy_15763T0/1-724 SGKGPGERRE GVNASVSSDV QSVFKGKTYS QLQVIFQGIE GKIRAGGPNL 451 500 ENSP00000415078/1-758 DMGYWESLLQ QLRAHMARAR LRERHQDVLR QKLYKLKQEQ GVESEPLFPI ENSBTAP00000013697/1-763 DMGYWESLLQ QLRAHMARAR LRERHQDVLR QKLYKLKQEQ GVESEPLFPI ENSTTRP00000005452/1-746 DMGYWESLLQ QLRAHMARAR LRERHQDVLR QKLYKLKQEQ GVESEPLFPI bmy_15763T0/1-724 DMGYWESLLQ QLRAHMARAR LRERHQDVLR QKLYKLKQEQ GVESEPLFPI 501 550 ENSP00000415078/1-758 LKQEPQSPSR SLEPEDAAPT PPGPSSEGGP AEAEVDGATP TEGDGDGDGE ENSBTAP00000013697/1-763 LKQEPPSPGH SLEPEDPAPT PPGP-SEGGP AEPEAEGATP AEGEAD---- ENSTTRP00000005452/1-746 LKQEPQSPGH SLETEDPAPT PPGP-SEGGA TEPEAEAAAP AEGEAD---- bmy_15763T0/1-724 LKQEPQSPGH SLEPEDPAPT PPGP-SEGGA AEPEAEAAAP AEGEAD---- 551 600 ENSP00000415078/1-758 GEGEGEAVLM EEDLIQQSLD DYDAGRYSPR LLTAHELPLD AHVLEPDEDL ENSBTAP00000013697/1-763 ----GEAVLM EEDLIQQSLD DYDAGKYSPR LLTAHELPLD AHVLEPDEDL ENSTTRP00000005452/1-746 ----GEAVLM EEDLIQQSLD DYDAGKYSPR LLTAHELPLD AHVLEPDEDL bmy_15763T0/1-724 ----GEAVLM EEDLIQQSLD DYDAGKYSPR LLTAHELPLD AHVLEPDEDL 601 650 ENSP00000415078/1-758 QRLQLSRQQL QVTGDASESA EDIFFRRAKE GMGQDEAQFS VEMPLTGKAY ENSBTAP00000013697/1-763 QRLQLSRQQL QVTGDASESA EDIFFRRAKE GMGQDEAQFS VEMPLTGKAY ENSTTRP00000005452/1-746 QRLQLSRQQL QVTGDATESA EDIFFRRAKE GMGQDEAQFS VEMPLTGKAY bmy_15763T0/1-724 QRLQLSRQQL QVTGDATESA EDIFFRRAKE GMGQDEAQFS VEMPLTGKAY 651 700 ENSP00000415078/1-758 LWADKYRPRK PRFFNRVHTG FEWNKYNQTH YDFDNPPPKI VQGYKFNIFY ENSBTAP00000013697/1-763 LWADKYRPRK PRFFNRVHTG FEWNKYNQTH YDFDNPPPKI VQGYKFNIFY ENSTTRP00000005452/1-746 LWADKYRPRK PRFFNRVHTG FEWNKYNQTH YDFDNPPPKI VQGYKFNIFY bmy_15763T0/1-724 LWADKYRPRK PRFFNRVHTG FEWNKYNQTH YDFDNPPPKI VQGYKFNIFY 701 750 ENSP00000415078/1-758 PDLIDKRSTP EYFLEACADN KDFAILRFHA GPPYEDIAFK IVNREWEYSH ENSBTAP00000013697/1-763 PDLIDKRSTP EYFLEACADN KDFATLRFHA GPPYEDIAFK IVNREWEYSH ENSTTRP00000005452/1-746 PDLIDKRSTP EYFLEACADN KDFATLRFHA GPPYEDIAFK IVNREWEYSH bmy_15763T0/1-724 PDLIDKRSTP EYFLEACADN KDFATLRFHA GPPYEDIAFK IVNREWEYSH 751 800 ENSP00000415078/1-758 RHGFRCQFAN GIFQLWFHFK RYRYRR---- ---------- ---------- ENSBTAP00000013697/1-763 RHGFRCQFAN GIFQLWFHFK RYRYRR---- ---------- ---------- ENSTTRP00000005452/1-746 RHGFRCQFAN GIFQLWFHFK RYRYRPGPCM FRRGHPGTSV PPARPVLAGV bmy_15763T0/1-724 RHGFRCQFAN GIFQLWFHFK RYRYRR---- ---------- ---------- 801 850 ENSP00000415078/1-758 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000013697/1-763 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000005452/1-746 SLRPVGAPSG GPLRVRLRSS HFPATTAPPC WQVSDTGSQG PGRYDHSCQG bmy_15763T0/1-724 ---------- ---------- ---------- ---------- ---------- 851 900 ENSP00000415078/1-758 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000013697/1-763 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000005452/1-746 APGGRIAFRF LTETFPTKWR SLKGAASPQT ASPKYPISSG NVSVSGCFFK bmy_15763T0/1-724 ---------- ---------- ---------- ---------- ---------- 901 950 ENSP00000415078/1-758 ---------- ---------- --- ENSBTAP00000013697/1-763 ---------- ---------- --- ENSTTRP00000005452/1-746 TIWGWGGILF IFILVYLDCM FFQ bmy_15763T0/1-724 ---------- ---------- ---