KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:51:12 2014 Check: 00 .. Name: ENSP00000314396/1-845 Len: 853 Check: 3060 Weight: 1.00 Name: ENSBTAP00000013701/1-846 Len: 853 Check: 8967 Weight: 1.00 Name: ENSTTRP00000014606/1-846 Len: 853 Check: 5704 Weight: 1.00 Name: bmy_04758T0/1-829 Len: 853 Check: 2777 Weight: 1.00 Name: BACU013560/1-816 Len: 853 Check: 4078 Weight: 1.00 // 1 50 ENSP00000314396/1-845 MSNSRPRSRR D-------AG GGAGAAGRDE LVSRSLQSAE HCLGVQDFGT ENSBTAP00000013701/1-846 MPNSRPRPRR G-------AG SGAGAPGRDE LVSRSLQSAE HCLGSQDFGT ENSTTRP00000014606/1-846 MPNLRPRPRR G-------AG RGARAAGRDE LVSRSLQSAE HCLGAQDFGT bmy_04758T0/1-829 MPNLRPRPRR GAGRGARAAG RGAGAAGRDE LVSRSLQSAE HCLGAQDFGT BACU013560/1-816 ---------- ---------- ---------- -------MAE HCLGAQDFGT 51 100 ENSP00000314396/1-845 AYAHYLLVLS LAPELKHDVK ETFQYTLFRW AEELDALSRI QDLLGCYEQA ENSBTAP00000013701/1-846 AYAHYLLVLS LAPELKDDVK ETFQYTLFRW AEELDALSRT QDLLGCYEQA ENSTTRP00000014606/1-846 AYAHYLLVLS LAPELKDDVK ETFQYTLFRW AEELDALSRT QDLLGCYEQA bmy_04758T0/1-829 AYAHYLLVLS LAPELKDDVK ----YTLFRW AEELDALSRT QDLLGCYEQA BACU013560/1-816 AYAHYLLVLS LAPELKDDVK ETFQYTLFRW AEELDALSRT QDLLGCYEQA 101 150 ENSP00000314396/1-845 LELFPDDEVI CNSMGEHLFR MGFRDEAAGY FHKAVKLNPD FSDAKENFYR ENSBTAP00000013701/1-846 LELFPDDEVI CNSMGEHLFR MGFRDEAAGY FHKAVKLNPD FNDAKENFYR ENSTTRP00000014606/1-846 LELFPDDEVI CNSMGEHLFR MGFRDEAAGY FRKAVKLNPD FSDAKENFYR bmy_04758T0/1-829 LELFPDDEVI CNSMGEHLFR MGFRDEAAGY FRKAMKLNPD FSDAKENFYR BACU013560/1-816 LELFPDDEVI CNSMGEHLFR MGFRDEAAGY FRKAMKLNPD FSDAKENFYR 151 200 ENSP00000314396/1-845 VANWLVERWH FIMLNDTKRN TIYNAAIQKA VCLGSKSVLD IGAGTGILSM ENSBTAP00000013701/1-846 VANWLVERWH FIMLNDTKRN TIYNAAIQKA VCSGSKSVLD IGAGTGILSM ENSTTRP00000014606/1-846 VANWLVERWH FLMLNDTRRN MIYNAAIQKA VRLGSGSVLD IGAGTGILSM bmy_04758T0/1-829 VANWLVERWH FIMLNDTRRN TIYNAAIQKA VCLGSKSVLD IGAGTGILSM BACU013560/1-816 VANWLVERWH FIMLNDTRRN TIYNAAIQKA VCLGSKSVLD IGAGTGILSM 201 250 ENSP00000314396/1-845 FAKKAGAHSV YACELSKTMY ELACDVVAAN KMEAGIKLLH TKSLDIEIPK ENSBTAP00000013701/1-846 FARKAGAHSV YACELSKTMY ELACDVVAAN EMEEGIKLLH MKSLDIKIPK ENSTTRP00000014606/1-846 FAKKAGAHLV YACELSKTMY ELACDVVAAN EMEAGIKLLH MKSLDIEIPK bmy_04758T0/1-829 FAKKAGAHLV YACELSKTMY ELACDVVAAN EMEAGIKLLH MKSLDIEIPK BACU013560/1-816 FAKKAGAHLV YACELSKTMY ELACDVVAAN EMEAGIKLLH MKSLDIEIPK 251 300 ENSP00000314396/1-845 HIPERVSLVV TETVDAGLFG EGIVESLIHA WEHLLLQPKT KGESANCEKY ENSBTAP00000013701/1-846 HIPERVSLVV TETVDAGLFG EGIVESLIHA WEHLLLQPKT KGENGDCEKY ENSTTRP00000014606/1-846 HIPERVSLVV TETVDAGLFG EGIVESLIHA WEHLLLQPKT KGENGNCEKY bmy_04758T0/1-829 HIPERVSLVV TETVDAGLFG EGIVESLIHA WEHLLLQPKT KGENGNCEKY BACU013560/1-816 HIPERVSLVV TETVDAGLFG EGIVESLIHA WEHLLLQPKT KGENGNCEKY 301 350 ENSP00000314396/1-845 GKVIPASAVI FGMAVECAEI RRHHRVGIKD IAGIHLPTNV KFQSPAYSSV ENSBTAP00000013701/1-846 GKVIPASAVI FGIAVECAEI RRHHRVGVKD VAGISLPTNV KFQSPAYSSV ENSTTRP00000014606/1-846 GKVIPASAVI FGMAVECAEI RRHHRVGIKD IAGICLPTSV KFQSPAYSSV bmy_04758T0/1-829 GKVIPASAVI FGMAVECAEI RRHHRVGIKD IAGICLPASV KFQSPAYSSV BACU013560/1-816 GKVIPASAVI FGMAVECAEI RRHHRVGIKD IAGICLPASV KFQSPAYSSV 351 400 ENSP00000314396/1-845 DTEETIEPYT TEKMSRVPGG YLALTECFEI MTVDFNNLQE LKSLATKKPD ENSBTAP00000013701/1-846 DGEETIEPYT TEKMSRVPGG YLALTECFEI MTVDFNNLQE LKSLATKKPD ENSTTRP00000014606/1-846 DAEETIEPYT TEKISRVPGG YLALTECFEI MTVDFNNLQE LKSLATKKPD bmy_04758T0/1-829 DAEETIEPYT TEKMSRVPGG YLALTECFEI MTVNFNNLQE LKSLATKKPD BACU013560/1-816 DAEETIEPYT TEKMSRVPGG YLALTECFEI MTVNFNNLQE LKSLATKKPD 401 450 ENSP00000314396/1-845 KIGIPVIKEG ILDAIMVWFV LQLDDEHSLS TSPSEETCWE QAVYPVQDLA ENSBTAP00000013701/1-846 KIGVPVIKEG VLDAIVVWFV LQLDDEHSLS TSPSEETCWE QAVYPVHDLA ENSTTRP00000014606/1-846 KIGIPVIKEG ILDAIVVWFV LQLDDEHSLS TSPSEETCWE QAVYPVHDLA bmy_04758T0/1-829 KIGIPVIKEG ILDAIVVWFV LQLDDEHSLS TSPSEETCWE QAVYPVHDLA BACU013560/1-816 KIGIPVIKEG ILDAIVVWFV LQLDDEHSLS TSPSEETCWE QAVYPVHDLA 451 500 ENSP00000314396/1-845 DYWIKPGDHV MMEVSCQDCY LRIQSISVLG LECEMDVAKS FTQNKDLLSL ENSBTAP00000013701/1-846 DYWIKLGDEV IMEVSCQDCY LRIQSISVFH SEHEMEVGKS FTRNKDLLSF ENSTTRP00000014606/1-846 DYWIKPGDEV MMEVSCQDCY LRIQSISVFN SEHAMDVGKS FTKNKDLLPL bmy_04758T0/1-829 DYWIKPGDQV MMEVSCQDCY LRIQSISVFN SEHEMDVGKS FTKNKDLLSL BACU013560/1-816 DYWIKPGDQV MMEVSCQDCY LRIQSISVFN SEHEMDVGRS FAKNKDLLSL 501 550 ENSP00000314396/1-845 GNEAELCSAL ANLQTSKPDA VEQTCILEST EIALLNNIPY HEGFKMAMSK ENSBTAP00000013701/1-846 GNEAELCSAL ANLQTSKPDV VEQLCVLEST EIALLNNIPY HEGFKMAMKK ENSTTRP00000014606/1-846 GNEAELCSAL ASLQTSKPDA VEQTCVLEST EIALLNNIPY HEGFKMAMKK bmy_04758T0/1-829 GNEAELCSAL ANLQTSKPDA VEQTCVLEST EIALLNNIPY HEGFKMAMKK BACU013560/1-816 GNEAELCSAL ANLQTSKPDA VVQTCVLEST EIALLNNIPY HEGFKMAMKK 551 600 ENSP00000314396/1-845 VLSSLTPEKL YQTMDTHCQ- NEMSSGTGQS NTVQNILEPF YVLDVSEGFS ENSBTAP00000013701/1-846 VLSSLTPEKL GQAMDTQCQN NEMSYESGPS NSDQSTPEPL YVLDVSEGFS ENSTTRP00000014606/1-846 VLSSLTLEKR GQAMDTQCPS NEMSCESGQN NSEQSVPEPL YVLDVSEGFS bmy_04758T0/1-829 VLSSLTLEKL GQAMDTQCQN NEMSCESGQN NSEQSVPEPL YVLDVSEGFS BACU013560/1-816 VLSSLTLEKL GQAMDTQCQN NEMSCESGQN NSEQSVPEPL YVLDVSEGFS 601 650 ENSP00000314396/1-845 VLPVIAGTLG QVKPYSSVEK DQHRIALDLI SEANHFPKET LEFWLRHVED ENSBTAP00000013701/1-846 VLPVIAGTLG QVKPYSSVEK DQHRATLDII CEANHFPKDT LEFWLRHVED ENSTTRP00000014606/1-846 ILPIIAGTLG QVKPYSSVEK DQHRMTLDLI SEANHFPKET LEFWLRHVED bmy_04758T0/1-829 VLPVIAGTLG QVKPYSSVEK DQHRMTLDLI SEANHFPKET LEFWLRHVED BACU013560/1-816 VLPVIAGTLG QVKPYSSVEK DQHRMTLDLI SEANHFPKET LEFWLRHVED 651 700 ENSP00000314396/1-845 ESAMLQRPKS DKLWSIIILD VIEPSGLIQQ EIMEKAAISR CLLQSGGKIF ENSBTAP00000013701/1-846 ESAVLQRPKS DKLWSIIILD VIEPSGLIQQ EIMEKAAISR CLLQSGGKIF ENSTTRP00000014606/1-846 ESAVLQRPKS DKLWSIIILD VIEPSGLLQQ EIMEKAAISR CLLQSGGKIF bmy_04758T0/1-829 ESAVLQRPKS DKLWSIIILD VIEPSGLMQQ EIMEKAAISR NL-------- BACU013560/1-816 ESAVLQRPKS DKLWSIIILD VIEPSGLIQQ EIMEKAAISR CLLQSGGKIF 701 750 ENSP00000314396/1-845 PQYVLMFGLL VESQTLLEEN AVQGTERTLG LNIAPFINQF QVPIRVFLDL ENSBTAP00000013701/1-846 PQYVLMFGLL VESQTLMEES AVQGAERTLG FNIAPFINQF QVPVRVFLDL ENSTTRP00000014606/1-846 PQYMLMFGLL VESQTLVEEN AVQGTERTLG FNIAPFINQF RVPIRVFLDL bmy_04758T0/1-829 ---------- --CPTLVEES AVQGTERTLG FNVAPFINQF QVPIRVFLDL BACU013560/1-816 PQYVLMFGLL VESQTLVEES AVQGTERTLG FNVAPFINQF QVPIRVFLDL 751 800 ENSP00000314396/1-845 SSLPCIPLSK PVELLRLDLM TPYLNTSNRE VKVYVCKSGR LTAIPFWYHM ENSBTAP00000013701/1-846 ASLPCIPLSK PVELLRLDLM TPYLNTSNRE VKVRICKSGQ VTAIPFWYHM ENSTTRP00000014606/1-846 SSLPCIPLSK PVELLRLDLM TPYLNTSNRE VKVCICKSGQ VTAIPFWYHM bmy_04758T0/1-829 SSLPCIPLSK PVELLRLDLM TPYLNTSNRE VKVCICKSGQ VTAIPFWYHM BACU013560/1-816 SSLPCIPLSK PVELLRLDLM TPYLNTSNRE VKVRICKSGQ VTAIPFWYHM 801 850 ENSP00000314396/1-845 YLDEEIRLDT SSEASHWKQA AVVLDNPIQV EMGEELVLSI QHHKSNVSIT ENSBTAP00000013701/1-846 YLDDEIRLDT SSEASHWKQA AVVLDNPIQV EMGDELVLSI QHHKSNVSIT ENSTTRP00000014606/1-846 YLDDEIRLDT SSESSHWKQA AVVLDNPIQV EMGDELVLNV QHHKSNVSIT bmy_04758T0/1-829 YLDDEIRLDT SSEASHWKQA AVVLDNPIQV EMGDELVLNV QHHKSNVSIT BACU013560/1-816 YLDDEIRLDT SSEASHWKQA AVVLDNPIQV EMGDELVLNV QHHKSNVSIT 851 900 ENSP00000314396/1-845 VKQ ENSBTAP00000013701/1-846 IKQ ENSTTRP00000014606/1-846 VKQ bmy_04758T0/1-829 VKQ BACU013560/1-816 VKQ