KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:51:12 2014 Check: 00 .. Name: ENSP00000359364/1-559 Len: 611 Check: 6444 Weight: 1.00 Name: ENSBTAP00000013703/1-561 Len: 611 Check: 7633 Weight: 1.00 Name: ENSTTRP00000001701/1-554 Len: 611 Check: 8075 Weight: 1.00 Name: BACU011247/1-567 Len: 611 Check: 4111 Weight: 1.00 Name: bmy_21754T0/1-526 Len: 611 Check: 918 Weight: 1.00 // 1 50 ENSP00000359364/1-559 MSATSVDTQR TKGQDNKV-- QNGSLHQKDT VHDNDFEPYL TGQSNQSNSY ENSBTAP00000013703/1-561 MSATSVDPQR TKGQDNKVSL QNGSLHQKDT VHDNDFEPYL SGQSNQSNSY ENSTTRP00000001701/1-554 MSATSVDPQX XXXXXXXX-- QNGSLHQKDT VHDNDFEPYL SGQSNQSNSY BACU011247/1-567 ---------- ---------- QNGSLHQKDT VHDNDFEPYL SGQSNQSNSY bmy_21754T0/1-526 ---------- ---------- MRGARRP--- ---------- --QHWWSNSY 51 100 ENSP00000359364/1-559 PSMSDPYLSS YYPPSIGFPY SLNEAPWSTA GDPPIPYLTT YGQLSNGDHH ENSBTAP00000013703/1-561 PSMADPYLSS YYPPSIGFPY SLNEAPWSTG GDPPIPYLTT YGQLSNGDHH ENSTTRP00000001701/1-554 PSMADPYLSS YYPPSIGFPY SLNEAPWSTG GDPPIPYLTT YGQLSNGDQH BACU011247/1-567 PSMAEPYLSS YYPPSIGFPY SLNEAPWSTG GDPPIPYLTT YGQLSNGDHH bmy_21754T0/1-526 PSMADPYLSS YYPPSIGFPY SLNEAPWSTG GDPPIPYLTT YGQLSNGDHH 101 150 ENSP00000359364/1-559 FMHDAVFGQP GGLGNNIYQH RFNFFPENPA FSAWGTSGSQ GQQTQSSAYG ENSBTAP00000013703/1-561 FVHDAVFGQP GGLGSNIYQH RFNFFPENPA FSAWGTSGSQ GQQAQSSAYG ENSTTRP00000001701/1-554 FVHDAVFGQP GGLGNNIYQH RFNFFPENPA FSAWGASGSQ GQQAQSSAYG BACU011247/1-567 FMHDAVFGQP GGLGSNIYQH RFNFFPENPA FSAWGTSGSQ GQQAQSSAYG bmy_21754T0/1-526 FMHDAVFGQP GGLGSNIYQH RFNFFPENPA FSAWGTSGSQ GQQAQSSAYG 151 200 ENSP00000359364/1-559 SSYTYPPSSL GGTVVDGQPG FHSDTLSKAP GMNSLEQGMV GLKIGDVSSS ENSBTAP00000013703/1-561 NSYTYPPSSL GGTIVDGQTG FHGDTLNKAP GMNSLEQGMV GLKIGDVTTS ENSTTRP00000001701/1-554 NSYTYPPSSL GGTIVDGQTG FHSDTLNKAP GMNSLEQGMV GLKIGDVTTS BACU011247/1-567 NSYTYPPSSL GGTIVDGQTG FHSDTLNKAP GMNSLEQGMV GLKIGDVTTS bmy_21754T0/1-526 NSYTYPPSSL GGTIVDGQTG FHSDTLNKAP GMNSLEQGMV GLKIGDVTTS 201 250 ENSP00000359364/1-559 AVKTVGSVVS SVALTGVLSG NGGTNVNMPV SKPTSWAAIA SKPAKPQPKM ENSBTAP00000013703/1-561 AVKTVGSVVS SVAMTGILSG NGGTNVPLPV SKPTSWAAIA SKPAKPQPKM ENSTTRP00000001701/1-554 AVKTVGSVVS SVAMTGILSG SGGTNVTMPV SKPTSWAAIA SKPAKLQPKM BACU011247/1-567 AVKTVGSVVS SVAMTGILSG NGGTNVTMPV SKPTSWAAIA SKPAKLQPKM bmy_21754T0/1-526 AVKTVGSVVS SVAMTGILSG NGGTNVTMPV SKPTSWAAIA SKPAKLQPKM 251 300 ENSP00000359364/1-559 KTKSGPVMGG GLPPPPIKHN MDIGTWDNKG PVPKAPVPQQ APSPQAAPQP ENSBTAP00000013703/1-561 KAKSGPAIGG ALPPPPIKHN MDIGTWDNKG PVPKAPAPQQ VPASSAAPQP ENSTTRP00000001701/1-554 KAKSGPAVGG ALPPPPIKHN MDIGTWDNKG PVPKAPAPQP QPAPQAAPQP BACU011247/1-567 KAKSGPAVGG ALPPPPIKHN MDIGTWDNKG P--------- ---------- bmy_21754T0/1-526 KAKSGPAVGG ALPPPPIKHN MDIGTWDNKG PVPKAPAPQP QLAPQAAPQP 301 350 ENSP00000359364/1-559 QQVAQPLPAQ PPALAQPQYQ SPQQPPQTRW VAPRNRNAAF GQSGGAGSDS ENSBTAP00000013703/1-561 QPAMQPLPAQ PPLPAPPQHT GPQQLPQTRW VAPRSRNAAF GQTGGLGSDS ENSTTRP00000001701/1-554 QPAVQPLPTQ PPPPAPPQHP GPQQPPQTRW VAPRNRSTAF GQSGGTSGDS BACU011247/1-567 -----PLPAQ PPPPAPAPHP GPQQPPQTRW VAPRNRSTVF GQSGGTSGDS bmy_21754T0/1-526 QPAVQPLPAQ PPPPAPPQHP GPQQPPQTRW VAPRNRSTAF GQSGGTSGDS 351 400 ENSP00000359364/1-559 NSPGNVQPNS APSVESHPVL EKLKAAHSYN PKEFEWNLKS GRVFIIKSYS ENSBTAP00000013703/1-561 NSSGGAQPST TPSAESHPVL EKLKAAHSYN PKEFDWNLKS GRVFIIKSYS ENSTTRP00000001701/1-554 NSPGSAQPSA TPSPESHPVL EKLKAAHSYN PKEFDWNLKS GRVFIIKSYS BACU011247/1-567 NSPGSAQPSA ALSPESHPVL EKLKAAHSYN PREFDWNLKS GRVFIIKSYS bmy_21754T0/1-526 NSPGSAQPSA ALSPESHPVL EKLKAAHSYN PREFDWNLKS GRVFIIKSYS 401 450 ENSP00000359364/1-559 EDDIHRSIKY SIWCSTEHGN KRLDSAFRCM SSKGPVYLLF SVNGSGHFCG ENSBTAP00000013703/1-561 EDDVHRSIKY SLWCSTEHGN RRLDSAFRAL GSKGPVYLLF SVNGSGHFCG ENSTTRP00000001701/1-554 EDDVHRSIKY SLWCSTEHGN RRLDSAFRAL GSKGPVYLLF SVNGSGHFCG BACU011247/1-567 EDDVHRSIKY SLWCSTEHGN RRLDSAFRAL GSKGPVYLLF SVNGSGHFCG bmy_21754T0/1-526 EDDVHRSIKY SLWCSTEHGN RRLDSAFRAL GSKGPVYLLF SVNGSGHFCG 451 500 ENSP00000359364/1-559 VAEMKSPVDY GTSAGVWSQD KWKGKFDVQW IFVKDVPNNQ LRHIRLENND ENSBTAP00000013703/1-561 VAEMKSPVDY GTSAGVWSQD KWKGKFDVKW IFVKDVPNSQ LRHIRLENND ENSTTRP00000001701/1-554 VAEMKSPVDY GTSAGVWSQD KWKGKFDVKW IFVKDVPNNQ LRHIRLENND BACU011247/1-567 VAEMKSPVDY GTSAGVWSQD KWKGKFDVKW IFVKDVPNNQ LRHIRLENND bmy_21754T0/1-526 VAEMKSPVDY GTSAGVWSQD KWKGKFDVKW IFVKDVPNNQ LRHIRLENND 501 550 ENSP00000359364/1-559 NKPVTNSRDT QEVPLEKAKQ VLKIISSYKH TTSIFDDFAH YEKRQEEEEV ENSBTAP00000013703/1-561 NKPVTNSRDT QEVPLEKARQ VLRIIASYRH STSIFDDFSH YERRQEEEEV ENSTTRP00000001701/1-554 NKPVTNSRDT QEVPLEKAKQ VLKIIASYKH STSIFDDFSH YEKRQEEEEV BACU011247/1-567 NKPVTNSRDT QEVPLEKAKQ VLRIIASYKH TTSIFDDFSH YEKRQEEEEV bmy_21754T0/1-526 NKPVTNSRDT QEVPLEKAKQ VLRIIASYKH TTSIFDDFSH YEKRQEEEEV 551 600 ENSP00000359364/1-559 VRKERQSRNK Q--------- ---------- ---------- ---------- ENSBTAP00000013703/1-561 VRKERQSRNK Q--------- ---------- ---------- ---------- ENSTTRP00000001701/1-554 VRKRWV---- ---------- ---------- ---------- ---------- BACU011247/1-567 VRKDIREFNS LLLTQCPVRI EKPKALDPKP TPDIYSASPS RRVEKSPCVC bmy_21754T0/1-526 VRKERQNRNK Q--------- ---------- ---------- ---------- 601 650 ENSP00000359364/1-559 ---------- - ENSBTAP00000013703/1-561 ---------- - ENSTTRP00000001701/1-554 ---------- - BACU011247/1-567 TEQTFLTPVS S bmy_21754T0/1-526 ---------- -