KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:51:13 2014 Check: 00 .. Name: ENSP00000345001/1-650 Len: 658 Check: 4027 Weight: 1.00 Name: ENSBTAP00000013704/1-505 Len: 658 Check: 7564 Weight: 1.00 Name: BACU016646/1-392 Len: 658 Check: 5360 Weight: 1.00 Name: bmy_02640T0/1-597 Len: 658 Check: 2816 Weight: 1.00 Name: ENSTTRP00000009964/1-654 Len: 658 Check: 2672 Weight: 1.00 // 1 50 ENSP00000345001/1-650 MATSNNPRKF SEKIALHNQK QAEETAAFEE VMKDLSLTRA ARLQLQKSQY ENSBTAP00000013704/1-505 ---------- ---------- ---------- -MKDLSLTRA ARLQLQKSQY BACU016646/1-392 ---------- ---------- ---------- ---------- ---------- bmy_02640T0/1-597 ---------- ---------- ---------- ---------- -QLQLQKSQY ENSTTRP00000009964/1-654 MATSNNPRKF SEKIALHNQK QAEETAAXXX XXXXXXXXXX XXLQLQKSQY 51 100 ENSP00000345001/1-650 LQLGPSRGQY YGGSLPNVNQ IGSGTMDLPF QPSGFLGEAL AAAPVSLTPF ENSBTAP00000013704/1-505 LQLGPSRGQY YGGSLPNVNQ IGSSTVDLPF Q--------- -------TPF BACU016646/1-392 ---------- ---------- ---------- ---------- ---------- bmy_02640T0/1-597 LQLGPSRGQY YGGSLPNVNQ IGSGTVDLPF Q--------- -------TPF ENSTTRP00000009964/1-654 LQLGPSRGQY YGGSLPNVNQ IGSGTVDLPF QPSGYLGEAL AAAPVSLTPF 101 150 ENSP00000345001/1-650 QSSGLDTSRT TRHHGLVDRV YRERGRLGSP HRRPLSVDKH GRQADS---- ENSBTAP00000013704/1-505 QSSGLDTSRT TRHHGLVDRV YRERGRLGSP HRRPLSVDKH GRQISFSQRI BACU016646/1-392 ---------- ---------- ---------- ---------- ---------- bmy_02640T0/1-597 QSSGLDTSRT TRHHGLVDRV YRERGRLGSP HRRPLSVDKH GRQADS---- ENSTTRP00000009964/1-654 QSSGLDTSRT TRHHGLVDRV YRERGRLGSP HRRPLSVDKH GRQADS---- 151 200 ENSP00000345001/1-650 CPYGTMYLSP PADTSWRRTN SDSALHQSTM TPTQPESFSS GSQDVHQKRV ENSBTAP00000013704/1-505 CPYGTVYLSP PADTSWRRTN SDSALHQSTM TPTQPEPFTG GSQDAHQKRV BACU016646/1-392 ---------- ---------- ---------M TPTQPEPFTG GSQDAHQKKV bmy_02640T0/1-597 CPYGTVYLSP PADTSWRRTN SDSALHQSTM TPTQPEPFTG GSQDAHQKKV ENSTTRP00000009964/1-654 CPYGTVYLSP PADTSWRRTN SDSALHQSTM TPTQPEPFTG GSQDVHQKKV 201 250 ENSP00000345001/1-650 LLLTVPGMEE TTSEADKNLS KQAWDTKKTG SRPKSCEVPG INIFPSADQE ENSBTAP00000013704/1-505 LLLTVPGMEE TASETDKNLS KQGWDTKKTG PRPKSCEVPG INIFPSADQE BACU016646/1-392 LLLTVPGMEE TTSEMDKNLS KQAWDTKKTG SRPKSCEVPG INIFPSADQE bmy_02640T0/1-597 LLLTVPGMEE TTSEMDKNLS KQAWDTKKTG SRPKSCEVPG INIFPSADQE ENSTTRP00000009964/1-654 LLLTVPGMEE TTSEMDKNLS KQAWDTKKTG SRPKSCEVPG INIFPSADQE 251 300 ENSP00000345001/1-650 NTTALIPATH NTGGSLPDLT NIHFPSPLPT PLDPEEPTFP ALSSSSSTGN ENSBTAP00000013704/1-505 NTTALIPATH NTGGSLPDLT NIHFPSPLPT PLDPEEPTFP ALSSSSSTGN BACU016646/1-392 NTTALIPATH NTGGSLPDLT NIHFPSPLPT PLDPEEPTFP ALSSSSSTGN bmy_02640T0/1-597 NTTALIPATH NTGGSLPDLT NIHFPSPLPT PLDPEEPTFP ALSSSSSTGN ENSTTRP00000009964/1-654 NTTALIPATH NTGGSLPDLT NIHFPSPLPT PLDPEEPTFP ALSSSSSTGN 301 350 ENSP00000345001/1-650 LAANLTHLGI GGAGQGMSTP GSSPQHRPAG VSPLSLSTEA RRQQA---SP ENSBTAP00000013704/1-505 LAANLTHLGI GAAGQGMSTP GSSPQHRPAG VSPLSLSTEA RRQQAQQVSP BACU016646/1-392 LAANLTHLGI GGAGQGMNTP GSSPQHRPAG VSPLSLSTEA RRQQAQQVSP bmy_02640T0/1-597 LAANLTHLGI GGAGQGMSTP GSSPQHRPAG VSPLSLSTEA RRQQAQQVSP ENSTTRP00000009964/1-654 LAANLTHLGI GGAGQGMSTP GSSPQHRPAG VSPLSLSTEA RRQQAQQVSP 351 400 ENSP00000345001/1-650 TLSPLSPITQ AVAMDALSLE QQLPYAFFTQ AGSQQ-PPPQ PQPPPPPPPA ENSBTAP00000013704/1-505 TLSPLSPITQ AVAMDALTLE QQLPYAFFTQ AGSQQPPPPQ PQPPPPPPPA BACU016646/1-392 TLSPLSPIT- ---------- ---------- ---------- ---------- bmy_02640T0/1-597 TLSPLSPITQ AVAMDALSLE QQLPYAFFTQ AGSQQPPPPQ PQPPPPPPPA ENSTTRP00000009964/1-654 TLSPLSPITQ AVAMDALSLE QQLPYAFFTQ AGSQQPPPPQ PQPPPPPPPA 401 450 ENSP00000345001/1-650 SQQPPPPPPP QAPVRLPPGG PLLPSASLTR GPQPPPLAVT VPSSLPQSPP ENSBTAP00000013704/1-505 SQQQPPPQPP ---------- ---------- ---------- ------QSPP BACU016646/1-392 ---------- ---------- ---------- ---------- ------QSPP bmy_02640T0/1-597 SQQQPPPPAP QVPVGLPQGG SLMPSASLTR GPQLPPLAVT VPSSLPQSPP ENSTTRP00000009964/1-654 SQQQPPPPPP QVPVGLPQGG SLMPSASLTR GPQLPPLAVT VPSSLPQSPP 451 500 ENSP00000345001/1-650 ENPGQPSMGI DIASAPALQQ YRTSAGSPAN QSPTSPVSNQ GFSPGSSPQH ENSBTAP00000013704/1-505 ENAGQPPMGI DIASAPALQQ YRTSAGSPAN QSPTSPVSNQ GFSPGSSPQH BACU016646/1-392 ENSGKPPMGI DTASASALQQ YRTSAGSPAN QSPTSPVSNQ GFSPGSSPQH bmy_02640T0/1-597 ENSGQPPMGI DTASAPALQQ YRTSAGSPAN QSPTSPVSNQ GFSPGSSPQH ENSTTRP00000009964/1-654 ENSGQPPMGI DTASAPALQQ YRTSAGSPAN QSPTSPVSNQ GFSPGSSPQH 501 550 ENSP00000345001/1-650 TSTLGSVFGD AYYEQQMAAR QANALSHQLE QFNMMENAIS SSSLYSPGST ENSBTAP00000013704/1-505 SSSLGGVFGD SFYEQQMAAR QANALSHQLE QFNMMENAIS SSSLYSPGST BACU016646/1-392 SSTLGGVFGD SFYEQQMAAR QANALSHQLE QFNMIENAIS SSGLYSPGST bmy_02640T0/1-597 SSTLGSVFGD SFYEQQMAAR QANALSHQLE QFNMIENAIS SSSLYSPGST ENSTTRP00000009964/1-654 SSTLGGVFGD SYYEQQMAAR QANALSHQLE QFNMIENAIS SSSLYSPGST 551 600 ENSP00000345001/1-650 LNYSQAAMMG LTGSHGSLPD SQQLGYASHS GIPNIILTVT GESPPSLSKE ENSBTAP00000013704/1-505 LNYSQAAMMG LTGSHGSLPD TQQLGYPSHS SIPNIILT-- ---------- BACU016646/1-392 LNYSQAAMMG LTGSHGSLPD TQQLSFPSHS SIPNIILTVT GESPPSLSKE bmy_02640T0/1-597 LNYSQAAMMG LTGSHGSLPD TQQLSFPSHS SIPNIILTVT GESPPSLSKE ENSTTRP00000009964/1-654 LNYSQAAMMG LTGSHGSLPD TQQLSFPSHG SIPNIILTVT GESPPSLSKE 601 650 ENSP00000345001/1-650 LTSSLAGVGD VSFDSDSQFP LDELKIDPLT LDGLHMLNDP DMVLADPATE ENSBTAP00000013704/1-505 ---------- ---------- ---------- ---------- ---------- BACU016646/1-392 LTSTLAGVGD VSFDSDNQFP LDELKIDPLT LDGLHMLNDP DMVLADPATE bmy_02640T0/1-597 LTSTLAGVGD VSFDSDNQFP LDELKIDPLT LDGLHMLNDP DMVLADPATE ENSTTRP00000009964/1-654 LTSTLAGVGD VSFDSDNQFP LDELKIDPLT LDGLHMLNDP DMVLADPATE 651 700 ENSP00000345001/1-650 DTFRMDRL ENSBTAP00000013704/1-505 -------- BACU016646/1-392 DTFRMDRL bmy_02640T0/1-597 DTFRMDRL ENSTTRP00000009964/1-654 DTFRMDRL