KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:51:16 2014 Check: 00 .. Name: ENSP00000355205/1-1556 Len: 1578 Check: 1842 Weight: 1.00 Name: ENSBTAP00000013708/1-1566 Len: 1578 Check: 4609 Weight: 1.00 Name: ENSTTRP00000010904/1-1536 Len: 1578 Check: 1784 Weight: 1.00 Name: bmy_09169T0/1-986 Len: 1578 Check: 3622 Weight: 1.00 Name: BACU008515/1-1543 Len: 1578 Check: 6310 Weight: 1.00 // 1 50 ENSP00000355205/1-1556 MASELGARDD GGCTELAKPL YLQYLERALR LDHFLRQTSA IFNRNISSDD ENSBTAP00000013708/1-1566 MASELGAGDD GGCTELAKPL YLQYLERALR LDHFLRQTSA IFNRNISSDE ENSTTRP00000010904/1-1536 MASELGAGDD GGFTELAKPL YLQYLERALR LDHFLRQTSA IFNRNISSDE bmy_09169T0/1-986 MASELGAGDD GGFTELAKPL YLQYLERALR LDHFLRQTSA IFNRNISSDE BACU008515/1-1543 MASELGAGDD GGFTELAKPL YLQYLERALR LDHFLRQTSA IFNRNISSDE 51 100 ENSP00000355205/1-1556 SEDGLDDSNP LLPQSGDPLI QVKEEPPNSL LGETSGAGSS GMLNTYSLNG ENSBTAP00000013708/1-1566 SEDGLDDSNP LLPQSGDPLI QVKEEPPNSL LGETSGASTS EMLNTYSLNG ENSTTRP00000010904/1-1536 SEDGLDDNNP LLPQSGDPLI QVKEEPPNSL LGETSGASSS GMLNTYSLNG bmy_09169T0/1-986 SEDGLDDNNP LLPQSGDPLI QVKEEPPNSL LGETSGASSS GMLNTYSLNG BACU008515/1-1543 SEDGLDDNNP LLPQSGDPLI QVKEEPPNSL LGETSGASSS GMLNTYSLNG 101 150 ENSP00000355205/1-1556 VLQSESKCDK GNLYNFSKLK KSRKWLKSIL LSDESSEADS QSEDDD---- ENSBTAP00000013708/1-1566 VLQSESKFDK GNLYNFSKLK KSRKWLKSIL LSDESSEADS HSEDNDEGEE ENSTTRP00000010904/1-1536 VLQSETKSDK GNLYNFSKLK KSRKWLKSIL LSDESSEADS QSEDND---- bmy_09169T0/1-986 VLQSETKSDK GNLYNFSKLK KSRKWLKSIL LSDESSEADS QSEDNDEEEE BACU008515/1-1543 VLQSETKSDK GNLYNFSKLK KSRKWLKSIL LSDESSEADS QSEDNDEEEE 151 200 ENSP00000355205/1-1556 -----EEELN LSREELHNML RLHKYKKLHQ NKYSKDKELQ QYQYYSAGLL ENSBTAP00000013708/1-1566 EDDDEEEELS LSREDLHNML RLHKYKKLHQ NKYSKEKELQ QYQYYSAGLL ENSTTRP00000010904/1-1536 -----EEELN LSREELHNML RLHKYKKLHQ NKYSKDKELQ QYQYYSAGLL bmy_09169T0/1-986 -----EEELN LSREELHNML RLHKYKKLHQ NKYSKDKELQ QYQYYSAGLL BACU008515/1-1543 E---EEEELN LSREELHNML RLHKYKKLHQ NKYSKDKELQ QYQYYSAGLL 201 250 ENSP00000355205/1-1556 STYDPFYEQQ RHLLGPKKKK FKEEKKLKAK LKKVKKKRRR DEELSSEESP ENSBTAP00000013708/1-1566 STYDPFYEQQ RHLLGPKKKK FKEEKKLKAK LKKVKKKRRR DEELSSEESP ENSTTRP00000010904/1-1536 STYDPFYEQQ RHLLGPKKKK FKEEKKLKAK LKKVKKKRRR DEELSSEESP bmy_09169T0/1-986 STYDPFYEQQ RHLLGPKKKK FKEEKKLKAK LKKVKKKRRR DEELSSEESP BACU008515/1-1543 STYDPFYEQQ RHLLGPKKKK FKEEKKLKAK LKKVKKKRRR DEELSSEESP 251 300 ENSP00000355205/1-1556 RRHHHQTKVF AKFSHDAPPP GTKKKHLSIE QLNARRRKVW LSIVKKELPK ENSBTAP00000013708/1-1566 RRHHHQTKVF AKFSHDAPPP GTKKKHLSIE QLNARRRKVW LSIVKKELPK ENSTTRP00000010904/1-1536 RRHHHQTKVF AKFSHDAPPP GTKKKHLSIE QLNARRRKVW LSIVKKELPK bmy_09169T0/1-986 RRHHHQTKVF AKFSHDAPPP GTKKKHLSIE QLNARRRKVW LSIVKKELPK BACU008515/1-1543 RRHHHQTKVF AKFSHDAPPP GTKKKHLSIE QLNARRRKVW LSIVKKELPK 301 350 ENSP00000355205/1-1556 ANKQKASARN LFLTNSRKLA HQCMKEVRRA ALQAQKNCKE TLPRARRLTK ENSBTAP00000013708/1-1566 ANKQKASARN LFLTNSRKLA HQCMKEVRRA ALQAQKNCKE TLPRARRLTK ENSTTRP00000010904/1-1536 ANKQKASARN LFLTNSRKLA HQCMKEVRRA ALQAQKNCKE TLPRARRLTK bmy_09169T0/1-986 ANKQKASARN LFLTNSRKLA HQCMKEVRRA ALQAQKNCKE TLPRARRLTK BACU008515/1-1543 ANKQKASARN LFLTNSRKLA HQCMKEVRRA ALQAQKNCKE TLPRARRLTK 351 400 ENSP00000355205/1-1556 EMLLYWKKYE KVEKEHRKRA EKEALEQRKL DEEMREAKRQ QRKLNFLITQ ENSBTAP00000013708/1-1566 EMLLYWKKYE KVEKEHRKRA EKEALEQRKL DEEMREAKRQ QRKLNFLITQ ENSTTRP00000010904/1-1536 EMLLYWKKYE KVEKEHRKRA EKEALEQRKL DEEMREAKRQ QRKLNFLITQ bmy_09169T0/1-986 EMLLYWKKYE KVEKEHRKRA EKEALEQRKL DEEMREAKRQ QRKLNFLITQ BACU008515/1-1543 EMLLYWKKYE KVEKEHRKRA EKEALEQRKL DEEMREAKRQ QRKLNFLITQ 401 450 ENSP00000355205/1-1556 TELYAHFMSR KRDMGHDGIQ EEILRKLEDS STQRQIDIGG GVVVNITQED ENSBTAP00000013708/1-1566 TELYAHFMSR KRDMGHDGIQ EEILRKLEDS SAQRQIDIGG GVVVNITQED ENSTTRP00000010904/1-1536 TELYAHFMSR KRDMGHDGIQ EEILRKLEDS STQRQIDIGG GVVVNITQED bmy_09169T0/1-986 TELYAHFMSR KRDMGHDGIQ EEILRKLEDS STQRQIDIGG GVVVNITQED BACU008515/1-1543 TELYAHFMSR KRDMGHDGIQ EEILRKLEDS STQRQIDIGG GVVVNITQED 451 500 ENSP00000355205/1-1556 YDSNHFKAQA LKNAENAYHI HQARTRSFDE DAKESRAAAL RAANKSGTGF ENSBTAP00000013708/1-1566 YDSNHFKAQA LKNAENAYHI HQARTRSFDE DAKESRAAAL RAANKSGTGF ENSTTRP00000010904/1-1536 YDSN-FKAQT --ENANAYHI HQARTRSFDE DAKESRAAAL RAANKSGTGF bmy_09169T0/1-986 YDSNHFKAQA LKNAENAYHI HQARTRSFDE DAKESRAAAL RAANKSGTGF BACU008515/1-1543 YDSNHFKAQA LKNAENAYHI HQARTRSFDE DAKESRAAAL RAANKSGTGF 501 550 ENSP00000355205/1-1556 GESYSLANPS IRAGEDIPQP TIFNGKLKGY QLKGMNWLAN LYEQGINGIL ENSBTAP00000013708/1-1566 GESYSLANPS IRAGEDIPQP TIFNGKLKGY QLKGMNWLAN LYEQGINGIL ENSTTRP00000010904/1-1536 GESYSLANPS IRAGED---P QTFN-KLK-Y QLKGMNW-AN LYEQGINGIL bmy_09169T0/1-986 GESYSLANPS IRAGEDIPQP TIFNGKLKGY QLKGMNWLAN LYEQGINGIL BACU008515/1-1543 GESYSLANPS IRAGEDIPQP TIFNGKLKGY QLKGMNWLAN LYEQGINGIL 551 600 ENSP00000355205/1-1556 ADEMGLGKTV QSIALLAHLA ERENIWGPFL IISPASTLNN WHQEFTRFVP ENSBTAP00000013708/1-1566 ADEMGLGKTV QSIALLAHLA ERENIWGPFL IISPASTLNN WHQEFTRFVP ENSTTRP00000010904/1-1536 ADEMGLGKTV QSIALLAHLA ERENIWGPFL IISPASTLNN GHQEFTRFVP bmy_09169T0/1-986 ADEMGLGKTV QSIALLAHLA ERENIWGPFL IISPASTLNN WHQEFTRFVP BACU008515/1-1543 ADEMGLGKTV QSIALLAHLA ERENIWGPFL IISPASTLNN WHQEFTRFVP 601 650 ENSP00000355205/1-1556 KFKVLPYWGN PHDRKVIRRF WSQ------- -----KTLYT QDAPFHVVIT ENSBTAP00000013708/1-1566 KFKVLPYWGN PHDRKVIRRF WSQ------- -----KTLYT QDAPFHVVIT ENSTTRP00000010904/1-1536 KCKVLPYWGN PHDRKVIRRF WSQ------- -----KTLYT QDAPFHVVIT bmy_09169T0/1-986 KFKVLPYWGN PHDRKVIRRF WSQVSLFTLA LLCLQKTLYT QDAPFHVVIT BACU008515/1-1543 KFK------- ---------- ---------- -----KTLYT QDAPFHVVIT 651 700 ENSP00000355205/1-1556 SYQLVVQDVK YFQRVKWQYM VLDEAQALKS SSSVRWKILL QFQCRNRLLL ENSBTAP00000013708/1-1566 SYQLVVQDVK YFQRVKWQYM VLDEAQALKS SSSVRWKILL QFQCRNRLLL ENSTTRP00000010904/1-1536 SYQLVVQDVK YFQRVKWQYM VLDEAQALKS SSSVRWKILL QFQCRNRLLL bmy_09169T0/1-986 SYQLVVQDVK YFQRVKWQYM VLDEAQALKS SSSVRWKILL QFQCRNRLLL BACU008515/1-1543 SYQLVVQDVK YFQRVKWQYM VLDEAQALKS SSSVRWKILL QFQCRNRLLL 701 750 ENSP00000355205/1-1556 TGTPIQNTMA ELWALLHFIM PTLFDSHEEF NEWFSKDIES HAENKSAIDE ENSBTAP00000013708/1-1566 TGTPIQNTMA ELWALLHFIM PTLFDSHEEF NEWFSKDIES HAENKSAIDE ENSTTRP00000010904/1-1536 TGTPIQNTMA ELWALLHFIM PTLFDSHEEF NEWFSKDIES HAENKSAIDE bmy_09169T0/1-986 TGTPIQNTMA ELWALLHFIM PTLFDSHEEF NEWFSKDIES HAENKSAIDE BACU008515/1-1543 TGTPIQNTMA ELWALLHFIM PTLFDSHEEF NEWFSKDIES HAENKSAIDE 751 800 ENSP00000355205/1-1556 NQLSRLHMIL KPFMLRRIKK DVENELSDKI EILMYCQLTS RQKLLYQALK ENSBTAP00000013708/1-1566 NQLSRLHMIL KPFMLRRIKK DVENELSDKI EILMYCQLTS RQKLLYQALK ENSTTRP00000010904/1-1536 NQLSRLHMIL KPFMLRRIKK DVENELSDKI EIL-YCQLTS R-KLLYQ-LK bmy_09169T0/1-986 NQLSRLHMIL KPFMLRRIKK DVENELSDKI EILMYCQLTS RQKLLYQALK BACU008515/1-1543 NQLSRLHMIL KPFMLRRIKK DVENELSDKI EILMYCQLTS RQKLLYQALK 801 850 ENSP00000355205/1-1556 NKISIEDLLQ SSMGSTQQAQ NTTSSLMNLV MQFRKVCNHP ELFERQETWS ENSBTAP00000013708/1-1566 NKISIEDLLQ SSMGSTQQAQ TTTSSLMNLV MQFRKVCNHP ELFERQETWS ENSTTRP00000010904/1-1536 NKI-IEDLLQ SSMSTQQ--Q DNTSSLM-LV MQFR-VCNHP ELFERQETWS bmy_09169T0/1-986 NKISIEDLLQ SSMGSTQQAQ TTTSSLMNLV MQFRKVCNHP ELFERQETWS BACU008515/1-1543 NKISIEDLLQ SSMGSTQQAQ TTTSSLMNLV MQFRKVCNHP ELFERQETWS 851 900 ENSP00000355205/1-1556 PFHISLKPYH ISKFIYRHGQ IRVFNHSRDR WLRV-LSPFA PDYIQRSLFH ENSBTAP00000013708/1-1566 PFHISLKPYQ ISKFIYRHGQ IRVFNHSRDR WLRVLLSPFA PDYIQQSLFH ENSTTRP00000010904/1-1536 PFHISLKPYQ ISKFIYRHGQ IRVFNHSRDR WLRVLLSPFA PDYVQQSLFH bmy_09169T0/1-986 PFHISLKPYQ ISKFIYRHGQ IRVFNHSRDR WLRVLLSPFA PDYIQQSLFH BACU008515/1-1543 PFHISLKPYQ ISKFIYRHGQ IRVFNHSRDR WLRVLLSPFA PDYIQQSLFH 901 950 ENSP00000355205/1-1556 RKGINEESCF SFLRFIDISP AEMANLMLQG LLARWLALFL SLKASYRLHQ ENSBTAP00000013708/1-1566 RKGVNEESCF SFLRFIDVSP AEMANLMLQG LLARWLALFL SLKASYRLHQ ENSTTRP00000010904/1-1536 RKGVNEESCF SFLRFIDVSP AEMANLMLQG LLARWLALFL SLKASYRLHQ bmy_09169T0/1-986 RKGVNEESCF SFLRFIDVSP AEMANLMLQG LLARWLALFL SLKASYRLHQ BACU008515/1-1543 RKGVNEESCF SFLRFIDISP AEMANLMLQG LLARWLALFL SLKASYRLHQ 951 1000 ENSP00000355205/1-1556 LRSWGAPEGE SHQRYLRNKD FLLGVNFPLS FPNLCSCPLL KSLVFSSHCK ENSBTAP00000013708/1-1566 LRSWGEPEGE SQEKYLRNKD FLLGVNFPLS FPNLSSCPLL KSLVFSSHCK ENSTTRP00000010904/1-1536 LRSWGEPEGE SQQKYLRNKD FLLGVNFPLS FPNLSSCPLL KSLVFSSHCK bmy_09169T0/1-986 LRSWGEPEGE SQQKYLRNKD FLLGVNFPLS FPNLSSCPLL K--------- BACU008515/1-1543 LRSWGEPEGE SQQKYLRNKD FLLGVNFPLS FPNLSSCPLL KSLVFSSHCK 1001 1050 ENSP00000355205/1-1556 AVSGYSDQVV HQRRSATSSL RRCLLTELPS FLCVASPRVT AVPLDSYCND ENSBTAP00000013708/1-1566 AVSGYSDQVI HQRRSATSSL RCCLLTELPS FLCVASPRVT AVPLDSYCND ENSTTRP00000010904/1-1536 AVSGYSDQVI HQRRSATSSL RCCLLTELPS FLCVASPRVT AVPLDSYCND bmy_09169T0/1-986 ---------- ---------- ---------- ---------- ---------- BACU008515/1-1543 AVSGYSDQVI HQRRSATSSL RCCLLTELPS FLCVASPRVT AVPLDSYCND 1051 1100 ENSP00000355205/1-1556 RSAEYERRVL KEGGSLAAKQ CLLNGAPELA ADWLNRRSQF FPEPAGGLWS ENSBTAP00000013708/1-1566 RSAEYERRVL KEGGSLAAKQ CLLNGAPELA ADWLNRRSQF FPEPAGGLWS ENSTTRP00000010904/1-1536 RSAEYERRVL KEGGSLAAKQ CLLNGAPELA ADWLNRRSQF FPEPAGGLWS bmy_09169T0/1-986 ---------- ---------- ---------- ---------- ---------- BACU008515/1-1543 RSAEYERRVL KEGGSLAAKQ CLLNGAPELA ADWLNRRSQF FPEPAGGLWS 1101 1150 ENSP00000355205/1-1556 IRPQNGWSFI RIPGKESLIT DSGKLYALDV LLTRLKSQGH RVLIYSQMTR ENSBTAP00000013708/1-1566 IRPQNGWSFI RIPGKESLIT DSGKLYALDV LLTRLKSQGH RVLIYSQMTR ENSTTRP00000010904/1-1536 IRPQNGWSFI RIPGKESLIT DSGKLYALDV LLTRLKSQGH RVLIYSQMTR bmy_09169T0/1-986 ---------- ---------- ---------- ---------- ---------- BACU008515/1-1543 IRPQNGWSFI RIPGKESLIT DSGKLYALDV LLTRLKSQGH RVLIYSQMTR 1151 1200 ENSP00000355205/1-1556 MIDLLEEYMV YRKHTYMRLD GSSKISERRD MVADFQNRND IFVFLLSTRA ENSBTAP00000013708/1-1566 MIDLLEEYMV YRKHTYMRLD GSSKISERRD MVADFQTRND IFVFLLSTRA ENSTTRP00000010904/1-1536 MIDLLEEYVV YR-HTYMTLD GSS-ISERRD MVA--FQQND IFVFLLSTRA bmy_09169T0/1-986 ---------- ---------- ---------- ---------- ---------- BACU008515/1-1543 MIDLLEEYVV YRKHTYMRLD GSSKISERRD MVADFQTRND IFVFLLSTRA 1201 1250 ENSP00000355205/1-1556 GGLGINLTAA DTVIFYDSDW NPTVDQQAMD RAHRLGQTKQ VTVYRLICKG ENSBTAP00000013708/1-1566 GGLGINLTAA DTVIFYDSDW NPTVDQQAMD RAHRLGQTKQ VTVYRLICKG ENSTTRP00000010904/1-1536 GGLGINLTAA DTVIFYDSDW NPTVDQQAMD RAHRLGQTKQ VTVYRLICKG bmy_09169T0/1-986 ---------- ---------- ---------- ---------- ---------- BACU008515/1-1543 GGLGINLTAA DTVIFYDSDW NPTVDQQAMD RAHRLGQTKQ VTVYRLICKG 1251 1300 ENSP00000355205/1-1556 TIEERILQRA KEKSEIQRMV ISGGNFKPDT LKPKEVVSLL LDDEELEKKL ENSBTAP00000013708/1-1566 TIEERILQRA KEKSEIQRMV ISGGNFKPDT LKPKEVVSLL LDDEELEKKL ENSTTRP00000010904/1-1536 TIEERILQRA KEKSEIQRMV ISGGNFKPDT LKPKEVVSLL LDDEELEKKL bmy_09169T0/1-986 ---------- ---------- ---------- ---------- ---------- BACU008515/1-1543 TIEERILQRA KEKSEIQRMV ISGGNFKPDT LKPKEVVSLL LDDEELEKKL 1301 1350 ENSP00000355205/1-1556 RLRQEEKRQQ EETNRVKERK RKREKYAEKK KKEDELDGKR RKEGVNLVIP ENSBTAP00000013708/1-1566 RLRQEEKRQQ EETNRVKERK RKREKYAEKK KKEDELDGKR RKEGMNLVIP ENSTTRP00000010904/1-1536 RLRQEEKRQQ EETNRVKERK RKREKYAEKK KKEDELDGKR RKEGVNLVIP bmy_09169T0/1-986 ---------- ---------- ---------- ---------- ---------- BACU008515/1-1543 RLRQEEKRQQ EETNRVKERK RKREKYAEKK KKEDELDGKR RKEGVNLVIP 1351 1400 ENSP00000355205/1-1556 FVPSADNSNL SADGDDSFIS VDSAMPSPFS EISISSELHT GSIPLDESSS ENSBTAP00000013708/1-1566 FVPSADNSNL SADGDDSFIS VDSAMPSPFS EISISSELHT GSIPPDESSS ENSTTRP00000010904/1-1536 FVPSADNSNL SADGDDSFIS VDSAMPSPFS EISISSELHT GSIPPDESSS bmy_09169T0/1-986 ---------- ---------- ---------- ---------- ---------- BACU008515/1-1543 FVPSADNSNL SADGDDSFIS VDSAMPSPFS EISISSELHT GSIPPDESSS 1401 1450 ENSP00000355205/1-1556 DMLVIVDDPA SSAPQSRATN SPASITGSVS DTVNGISIQE MPAAGRGHSA ENSBTAP00000013708/1-1566 DMLVIVDDPA SSAPQSRATN SPASMTGSVS DTVNGISIQE MPAAGRGHSA ENSTTRP00000010904/1-1536 DMLVIVDDPA SSAPQSRATN SPASITGSVS DTVNGISIQE MPAAGRGHSA bmy_09169T0/1-986 ---------- ---------- ---------- ---------- ---------- BACU008515/1-1543 DMLVIVDDPA SSAPQSRATN SPASITGSVS DTVNGISIQE MPAAGRGHSA 1451 1500 ENSP00000355205/1-1556 RSRGRPKGSG STAKGAGKGR SRKSTAGSAA AMAGAKAGAA AASAAAYAAY ENSBTAP00000013708/1-1566 RSRGRPKGSG STAKGAGKGR SRKSTAGSAA AMAGAKAGAA AASAAAYAAY ENSTTRP00000010904/1-1536 RSRGRPKGSG STAKGAGKGR SRKSTAGSAA AMAGAKAGAA AASAAAYAAY bmy_09169T0/1-986 ---------- ---------- ---------- ---------- ---------- BACU008515/1-1543 RSRGRPKGSG STAKGAGKGR SRKSTAGSAA AMAGAKAGAA AASAAAYAAY 1501 1550 ENSP00000355205/1-1556 GYNVSKGISA SSPLQTSLVR PAGLADFGPS SASSPLSSPL SKGNNVPGNP ENSBTAP00000013708/1-1566 GYNVSKGISA SSPLQTSLVR PAGLADFGPS SASSPLSSPL GKGNNLPGTP ENSTTRP00000010904/1-1536 GYNVSKGISA SSPLQTSLVR PAGLADFGPS SASSPLSSPL SKGNSVPGTP bmy_09169T0/1-986 ---------- ---------- ---------- ---------- ---------- BACU008515/1-1543 GYNVSKGISA SSPLQTSLVR PAGLADFGPS SASSPLSSPL SKGNSVPGTP 1551 1600 ENSP00000355205/1-1556 KNLHMTSSLA PDSLVRKQGK GTNPSGGR ENSBTAP00000013708/1-1566 KSLHLTSSLA PDSLVRKQGK GAKPSGGR ENSTTRP00000010904/1-1536 KSLHLTSSLA PDSLVRKQGK GTNPSGGR bmy_09169T0/1-986 ---------- ---------- -------- BACU008515/1-1543 KSLHLTSSLA PDSLVRKQGK GTNPSGGR