KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:51:18 2014 Check: 00 .. Name: bmy_06061T0/1-1184 Len: 1396 Check: 8835 Weight: 1.00 Name: ENSP00000343001/1-1302 Len: 1396 Check: 5174 Weight: 1.00 Name: ENSBTAP00000013729/1-1362 Len: 1396 Check: 9578 Weight: 1.00 Name: BACU002992/1-1060 Len: 1396 Check: 3871 Weight: 1.00 Name: ENSTTRP00000002863/1-1304 Len: 1396 Check: 509 Weight: 1.00 // 1 50 bmy_06061T0/1-1184 GRLVCSEDIY RVLAAVGVAV IAWAVAVSTI TELWCSDLNI RRRRLARLAG ENSP00000343001/1-1302 MEELSADEI- ---------- ---------- ---------- RRRRLARLAG ENSBTAP00000013729/1-1362 MEELSADEI- ---------- ---------- ---------- RRRRLARLAG BACU002992/1-1060 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000002863/1-1304 MEELSADEI- ---------- ---------- ---------- RRRRLARLAG 51 100 bmy_06061T0/1-1184 GQTSQPTTPL TSPQRENPPG PPIAASAPGP SQSLGLNVHN MTPATSPIGA ENSP00000343001/1-1302 GQTSQPTTPL TSPQRENPPG PPIAASAPGP SQSLGLNVHN MTPATSPIGA ENSBTAP00000013729/1-1362 GQTSQPTTPL TSPQRENPPG PPIAASAPGP SQSLGLNVHN MTPATSPIGA BACU002992/1-1060 ---------- ---------- ---------- ---------- MTPATSPIGA ENSTTRP00000002863/1-1304 GQTSQPNTPL TSPQRESPPG PPVAASAPGP SQSLGLNVHN MTPATSPIGA 101 150 bmy_06061T0/1-1184 SGVAHRSQSS EGVSSLSSSP SNSLETQSQS LSRSQSMDID GVSCEKSMSQ ENSP00000343001/1-1302 SGVAHRSQSS EGVSSLSSSP SNSLETQSQS LSRSQSMDID GVSCEKSMSQ ENSBTAP00000013729/1-1362 SGVAHRSQSS EGVSSLSSSP SNSLETQSQS LSRSQSMDID GVSCEKSMSQ BACU002992/1-1060 SGVAHRSQSS EGVSSLSSSP SNSLETQSQS LSRSQSMDID GVSCEKSMSQ ENSTTRP00000002863/1-1304 SGVAHRSQSS EGVSSLSSSP SNSLETQSQS LSRSQSMDID GVSCEKSMSQ 151 200 bmy_06061T0/1-1184 VDVDSGIENM EVDENDRREK RSLSDKEPSS GSEVSEEQAL QLVCKIFRVS ENSP00000343001/1-1302 VDVDSGIENM EVDENDRREK RSLSDKEPSS GPEVSEEQAL QLVCKIFRVS ENSBTAP00000013729/1-1362 VDVDSGIENM EVDENDRREK RSLSDKEPSS GSEVSEEQAL QLVCKIFRVS BACU002992/1-1060 VDVDSGIENM EVDENDRREK RSLSDKEASS GSEVSEEQAL QLVCKIFRVS ENSTTRP00000002863/1-1304 VDVDSGIENM EVDENDRREK RSLSDKEPSS GSEVSEEQAL QLVCKIFRVS 201 250 bmy_06061T0/1-1184 WKDRDRDVIF LSSLSAQFKQ NPKEVFSDFK DLIGQILMEV LMMSTQTRDE ENSP00000343001/1-1302 WKDRDRDVIF LSSLSAQFKQ NPKEVFSDFK DLIGQILMEV LMMSTQTRDE ENSBTAP00000013729/1-1362 WKDRDRDVIF LSSLSAQFKQ NPKEVFSDFK DLIGQILMEV LMMSTQTRDE BACU002992/1-1060 WKDRDRDVIF LSSLSAQFKQ NPKEVFSDFK DLIGQILMEV LMMSTQTRDE ENSTTRP00000002863/1-1304 WKDRDRDVIF LSSLSAQFKQ NPKEVFSDFK DLIGQILMEV LMMSTQTRDE 251 300 bmy_06061T0/1-1184 NPFASLTATS QPIAAAARSP DRNLLLNTGS NPGTSPMFCS VGSFGASSLS ENSP00000343001/1-1302 NPFASLTATS QPIAAAARSP DRNLLLNTGS NPGTSPMFCS VASFGASSLS ENSBTAP00000013729/1-1362 NPFASLTATS QPIAATARSP DRNLMLTTGS NPGTSPMFCN LGSFGASSLS BACU002992/1-1060 NPFASLTATS QPIAAAARSP DRNLMLNTGS NPGTSPMFCS VGSFGASSLS ENSTTRP00000002863/1-1304 NPFASLTATS QPIAAAARSP DRNLMLNTGS NPGTSPMFCS VGSFGASSLS 301 350 bmy_06061T0/1-1184 SL-------- ---------- ---------- ---------- ---------- ENSP00000343001/1-1302 SLYESSPAPT PSFWSSVPVM GPSLASPSRA ASQLAVPSTP LSPHSAASGT ENSBTAP00000013729/1-1362 SLYETSPAPN TSVWSSVPMM SPPLASPSRA ASQAAVPPAS SLCPPGPAGT BACU002992/1-1060 SL-------- ---------- ---------- ---------- ---------- ENSTTRP00000002863/1-1304 SLYETSPAPS MSVWSSVPMM SLPLAPPSRA ASQASTPPAS LSPHGAAAGT 351 400 bmy_06061T0/1-1184 ---------- ---------- ---------- ---------- ---------- ENSP00000343001/1-1302 AAGSQPSSPR YRPYTVTHPW A--------S SGVSILSSSP SPPALASSPQ ENSBTAP00000013729/1-1362 PAGSQPSSPR YRPYTVTHPS GSTSTPASRS SGTSILSSSP GLSAPASSPQ BACU002992/1-1060 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000002863/1-1304 PAGSQPSSPR YRPYTVTHPW G--------S SGSSILSSSP GLPTPASSPQ 401 450 bmy_06061T0/1-1184 ---------- ---------- ---------- ---------- ---------- ENSP00000343001/1-1302 AVPASSSRQR PSSTGPPLPP ASP--SATSR RPSSLRISP- ---------- ENSBTAP00000013729/1-1362 AVPTSSSRQR PPGTGPPLLS ASPGGSAPSR RPSSLRNSPS MYDSPFSFLF BACU002992/1-1060 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000002863/1-1304 AVPANSSRQR PTGAGPPLLS ASSGAGAMSR RPSSLRSSP- ---------- 451 500 bmy_06061T0/1-1184 ---------- ---------- ---------- ---------- -GASGGASTW ENSP00000343001/1-1302 ---------- ---------- ---------- ---------S LGASGGASNW ENSBTAP00000013729/1-1362 LALSGDSSDE DEEDDDDGDD GDDEGGGGGD EFSCVQFGSS LGASGGASTW BACU002992/1-1060 ---------- ---------- ---------- ---------- -GASGGASTW ENSTTRP00000002863/1-1304 ---------- ---------- ---------- ---------S FGASGGASTW 501 550 bmy_06061T0/1-1184 DSYSDHFTIE TCKETDMLNY LIECFDRVGI EEKKAPKMCS QPAVSQLLSN ENSP00000343001/1-1302 DSYSDHFTIE TCKETDMLNY LIECFDRVGI EEKKAPKMCS QPAVSQLLSN ENSBTAP00000013729/1-1362 DSYSDHFTIE TCKETDMLNY LIECFDRVGI EEKKAPKMCS QPAVSQLLSN BACU002992/1-1060 DSYSDHFTIE TCKETDMLNY LIECFDRVGI EEKKAPKMCS QPAVSQLLSN ENSTTRP00000002863/1-1304 DSYSDHFTIE TCKETDMLNY LIECFDRVGI EEKKAPKMCS QPAVSQLLSN 551 600 bmy_06061T0/1-1184 IRSQCISHTA LVLQGSLTQP RSLQQPSFLV PYMLCRNLPY GFIQELVRTT ENSP00000343001/1-1302 IRSQCISHTA LVLQGSLTQP RSLQQPSFLV PYMLCRNLPY GFIQELVRTT ENSBTAP00000013729/1-1362 IRSQCISHTA LVLQGSLTQP RSLQQPSFLV PYMLCRNLPY GFIQELVRTT BACU002992/1-1060 IRSQCISHTA LVLQGSLTQP RSLQQPSFLV PYMLCRNLPY GFIQELVRTT ENSTTRP00000002863/1-1304 IRSQCISHTA LVLQGSLTQP RSLQQPSFLV PYMLCRNLPY GFIQELVRTT 601 650 bmy_06061T0/1-1184 HQDEEVFKQI FIPILQGLAL AAKECSLDSD YFKYPLMALG ELCETKFGKT ENSP00000343001/1-1302 HQDEEVFKQI FIPILQGLAL AAKECSLDSD YFKYPLMALG ELCETKFGKT ENSBTAP00000013729/1-1362 HQDEEVFKQI FIPILQGLAL AAKECSLDSD YFKYPLMALG ELCETKFGKT BACU002992/1-1060 HQDEEVFKQI FIPILQGLAL AAKECSLDSD YFKYPLMALG ELCETKFGKT ENSTTRP00000002863/1-1304 HQDEEVFKQI FIPILQGLAL AAKECSLDSD YFKYPLMALG ELCETKFGKT 651 700 bmy_06061T0/1-1184 HPVCNLVASL PLWLPKSLSP GSGRELQRLS YLGAFFSFSV FAEDDAKVVE ENSP00000343001/1-1302 HPVCNLVASL RLWLPKSLSP GCGRELQRLS YLGAFFSFSV FAEDDVKVVE ENSBTAP00000013729/1-1362 HPVCNLVASL PLWLPKSLSP GSGRELQRLS YLGAFFSFSV FAEDDAKVVE BACU002992/1-1060 HPVCNLVASL PLWLPKSLSP GSGRELQRLS YLGAFFSFSV FAEDDAKVVE ENSTTRP00000002863/1-1304 HPVCNLVASL PLWLPKSLSP GSGRELQRLS YLGAFFSFSV FAEDDAKVVE 701 750 bmy_06061T0/1-1184 KYFSGPAITL ENTRVVSQSL QHYLELGRQE LFKILHSILL NGETREAALG ENSP00000343001/1-1302 KYFSGPAITL ENTRVVSQSL QHYLELGRQE LFKILHSILL NGETREAALS ENSBTAP00000013729/1-1362 KYFSGPAITL ENTRVVSQSL QHYLELGRQE LFKILHSILL NGETREAALS BACU002992/1-1060 KYFSGPAITL ENTRVVSQSL QHYLELGRQE LFKILHSILL NGETREAALG ENSTTRP00000002863/1-1304 KYFSGPAITL ENTRVVSQSL QHYLELGRQE LFKILHSILL NGETREAALG 751 800 bmy_06061T0/1-1184 YMAAVVNANM KKAQMQTDDR LVSTDGLMLN FLWVLQQLST KIKLETVDPT ENSP00000343001/1-1302 YMAAVVNANM KKAQMQTDDR LVSTDGFMLN FLWVLQQLST KIKLETVDPT ENSBTAP00000013729/1-1362 YMAAVVNANM KKAQMQTDDR LVSTDGFMLN FLWVLQQLST KIKLETVDPT BACU002992/1-1060 YMAAVVNANM KKAQMQTDDR LVSTDGLMLN FLWVLQQLST KIKLETVDPT ENSTTRP00000002863/1-1304 YMAAVVNANM KKAQMQTDDR LVSTDGLMLN FLWVLQQLST KIKLETVDPT 801 850 bmy_06061T0/1-1184 YIFHPRCRIT LPSDETRVNA TMEDME--IN RRFLSQNSLR NASF------ ENSP00000343001/1-1302 YIFHPRCRIT LPNDETRVNA TMEDVNDWLT ELYGDQPPFS EPKFPTECFF ENSBTAP00000013729/1-1362 YIFHPRCRIT LPNDETRVNA TMEDVNDWLA ELYGDQPPFS EPKFPTECFF BACU002992/1-1060 YIFHPRCRIT LPSDETRVNA TMEDVNDWLT ELYGDQPPFS EPKFPTECFF ENSTTRP00000002863/1-1304 YIFHPRCRIT LPSDETRVNA TMEDVNDWLT ELYGDQSPFS EPKFPTECFF 851 900 bmy_06061T0/1-1184 -------LPC TPTISQFCRV ADATSAGSGP SGSSTDLKNN ESQWKDSPLA ENSP00000343001/1-1302 LTLHAHHLSI LPSCRRYIRR LRAIRE---L NRTVEDLKNN ESQWKDSPLA ENSBTAP00000013729/1-1362 LTLHAHHLSI LPSCRRYIRR LRAIRE---L NRTVEDLKNN ESQWKDSPLA BACU002992/1-1060 LTLHAHHLSI LPGCRRYIRR LRAIRE---L NRTVEDLKNN ESQWKDSPLA ENSTTRP00000002863/1-1304 LTLHAHHLSI LPGCRRYIRR LRAIRE---L NRTVEDLKNN ESQWKDSPLA 901 950 bmy_06061T0/1-1184 ARHREMLKRC KTQLKKLVRC KACADAGLLD ESFLRRCLHF YGLLIQLLLR ENSP00000343001/1-1302 TRHREMLKRC KTQLKKLVRC KACADAGLLD ESFLRRCLNF YGLLIQLLLR ENSBTAP00000013729/1-1362 TRHREMLKRC KTQLKKLVRC KACADAGLLD ESFLRRCLNF YGLLIQLLLR BACU002992/1-1060 ARHREMLKRC KTQLKKLVRC KACADAGLLD EGFLRRCLHF YGLLIQLLLR ENSTTRP00000002863/1-1304 ARHREMLKRC KTQLKKLVRC KACADAGLLD ESFLRRCLNF YGLLIQLLLR 951 1000 bmy_06061T0/1-1184 ILDPAYPAVT LPLSSDVPKV FAALPEFYVE DVAEFLFFIV QYSPQVLYEP ENSP00000343001/1-1302 ILDPAYPDIT LPLNSDVPKV FAALPEFYVE DVAEFLFFIV QYSPQALYEP ENSBTAP00000013729/1-1362 LLDPAYPDVT LPLNSDVPKV FAALPEFYVE DVAEFLFFIV QYSPQVLYEP BACU002992/1-1060 ILDPAYPAVT LPLSSDVPKV FAALPEFYVE DVAEFLFFIV QYSPQVLYEP ENSTTRP00000002863/1-1304 ILDPAYPDIT LPLSADVPKV FAALPEFYVE DVAEFLFFIV QYSPQVLYEP 1001 1050 bmy_06061T0/1-1184 CTQDIVMFLV VMLCNQNYIR NPYLVAKLVE VMFMTNPAVQ PRTQKFFEMI ENSP00000343001/1-1302 CTQDIVMFLV VMLCNQNYIR NPYLVAKLVE VMFMTNPAVQ PRTQKFFEMI ENSBTAP00000013729/1-1362 CTQDIVMFLV VMLCNQNYIR NPYLVAKLVE VMFMTNPAVQ PRTQKFFEMI BACU002992/1-1060 CTQDIVMFLV VMLCNQNYIR NPYLVAKLVE VMFMTNPAVQ PRTQKFFEMI ENSTTRP00000002863/1-1304 CTQDIVMFLV VMLCNQNYIR NPYLVAKLVE VMFMTNPAVQ PRTQKFFEMI 1051 1100 bmy_06061T0/1-1184 ENHPLSTKLL VPSLMKFYTD VEHTGATSEF YDKFTIRYHI STIFKSLWQN ENSP00000343001/1-1302 ENHPLSTKLL VPSLMKFYTD VEHTGATSEF YDKFTIRYHI STIFKSLWQN ENSBTAP00000013729/1-1362 ENHPLSTKLL VPSLMKFYTD VEHTGATSEF YDKFTIRYHI STIFKSLWQN BACU002992/1-1060 ENHPLSTKLL VPSLMKFYTD VEHTGATSEF YDKFTIRYHI STIFKSLWQN ENSTTRP00000002863/1-1304 ENHPLSTKLL VPSLMKFYTD VEHTGATSEF YDKFTIRYHI STIFKSLWQN 1101 1150 bmy_06061T0/1-1184 IAHHGTFMEE FNSGKQFVRY INMLINDTTF LLDESLESLK RIHEVQEEMK ENSP00000343001/1-1302 IAHHGTFMEE FNSGKQFVRY INMLINDTTF LLDESLESLK RIHEVQEEMK ENSBTAP00000013729/1-1362 IAHHGTFMEE FNSGKQFVRY INMLINDTTF LLDESLESLK RIHEVQEEMK BACU002992/1-1060 IAHHGTFMEE FNSGKQFVRY INMLINDTTF LLDESLESLK RIHEVQEEMK ENSTTRP00000002863/1-1304 IAHHGTFMEE FNSGKQFVRY INMLINDTTF LLDESLESLK RIHEVQEEMK 1151 1200 bmy_06061T0/1-1184 NKEQWDQLPR DQQQARQSQL AQDERVSRSY LALATETVDM FHILTKQVQK ENSP00000343001/1-1302 NKEQWDQLPR DQQQARQSQL AQDERVSRSY LALATETVDM FHILTKQVQK ENSBTAP00000013729/1-1362 NKEQWDQLPR DQQQARQSQL AQDERVSRSY LALATETVDM FHILTKQVQK BACU002992/1-1060 NKEQWDQLPR DQQQARQSQL AQDERVSRSY LALATETVDM FHILTKQVQK ENSTTRP00000002863/1-1304 NKEQWDQLPR DQQQARQSQL AQDERVSRSY LALATETVDM FHILTKQVQK 1201 1250 bmy_06061T0/1-1184 PFLRPELGPR LAAMLNFNLQ QLCGPKCRDL KVENPEKYGF EPKKLLDQLT ENSP00000343001/1-1302 PFLRPELGPR LAAMLNFNLQ QLCGPKCRDL KVENPEKYGF EPKKLLDQLT ENSBTAP00000013729/1-1362 PFLRPELGPR LAAMLNFNLQ QLCGPKCRDL KVENPEKYGF EPKKLLDQLT BACU002992/1-1060 PFLRPELGPR LAAMLNFNLQ QLCGPKCRDL KVENPEKYGF EPKKLLDQLT ENSTTRP00000002863/1-1304 PFLRPELGPR LAAMLNFNLQ QLCGPKCRDL KVENPEKYGF EPKKLLDQLT 1251 1300 bmy_06061T0/1-1184 DIYLQLDCAR FAKAIADDQR SYSKELFEEV ISKMRKAGIK STIAIEKFKL ENSP00000343001/1-1302 DIYLQLDCAR FAKAIADDQR SYSKELFEEV ISKMRKAGIK STIAIEKFKL ENSBTAP00000013729/1-1362 DIYLQLDCAR FAKAIADDQR SYSKELFEEV ISKMRKAGIK STIAIEKFKL BACU002992/1-1060 DIYLQLDCAR FAKAIADDQR SYSKELFEEV ISKMRKAGIK STIAIEKFKL ENSTTRP00000002863/1-1304 DIYLQLDCAR FAKAIADDQR SYSKELFEEV ILKMRKAGIK STIAIEKFKL 1301 1350 bmy_06061T0/1-1184 LAEKVEEIVA KNARAEIDY- -------NPL MDTLMTDPVR LPSGTIMDRS ENSP00000343001/1-1302 LAEKVEEIVA KNARAEIDYS DAPDEFRDPL MDTLMTDPVR LPSGTIMDRS ENSBTAP00000013729/1-1362 LAEKVEEIVA KNARAEIDYS DAPDEFRDPL MDTLMTDPVR LPSGTIMDRS BACU002992/1-1060 LAEKVEEIVA KNARAEIDYS DAPDEFRG-- ---------- ---------- ENSTTRP00000002863/1-1304 LAEKVEEIVA KNARAEIDYS DAPDEFRDPL MDTLMTDPVR LPSGTIMDRS 1351 1400 bmy_06061T0/1-1184 IILRHLLNSP TDPFNRQTLT ESMLEPVPEL KEQIHAWMRE KQNNDH ENSP00000343001/1-1302 IILRHLLNSP TDPFNRQTLT ESMLEPVPEL KEQIQAWMRE KQNSDH ENSBTAP00000013729/1-1362 IILRHLLNSP TDPFNRQTLT ESMLEPVPEL KEQIHAWMRE KQNSDH BACU002992/1-1060 ---------- --EWARFFHV EFFGLS---- ---------- ------ ENSTTRP00000002863/1-1304 VILRHLLNSP TDPFNRXXXX XXXXXXXPEL KEQIHAWMRE KQNNDH