KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:51:23 2014 Check: 00 .. Name: ENSP00000356087/1-716 Len: 718 Check: 4949 Weight: 1.00 Name: ENSBTAP00000013738/1-718 Len: 718 Check: 1768 Weight: 1.00 Name: ENSTTRP00000004067/1-718 Len: 718 Check: 6240 Weight: 1.00 Name: bmy_02370T0/1-558 Len: 718 Check: 4070 Weight: 1.00 Name: BACU016488/1-671 Len: 718 Check: 7085 Weight: 1.00 // 1 50 ENSP00000356087/1-716 MQSTANYLWH TDDLLGQGAT ASVYKARNKK SGELVAVKVF NTTSYLRPRE ENSBTAP00000013738/1-718 MQSTVNYLWH TDDLLGQGAT ARVYKARNKK SGELVAVKVF NTASYLRPRE ENSTTRP00000004067/1-718 MQSTVNYLWH TDDLLGQGAT ASVYKARNKK SGELVAVKVF NTASYLRPRE bmy_02370T0/1-558 MQSTVNYLWH TDDLLGQGAT ASVYKARNKK SGELVAVKVF NTASYLRPRE BACU016488/1-671 MQSTVNYLWH TDDLLGQGAT ASVYKARNK- ---------- ---------- 51 100 ENSP00000356087/1-716 VQVREFEVLR KLNHQNIVKL FAVEETGGSR QKVLVMEYCS SGSLLSVLES ENSBTAP00000013738/1-718 VQVREFEVLR KLNHQNIIKL FAVEETGAGR QKVLVMEYCS SGSLLSVLES ENSTTRP00000004067/1-718 VQVREFEVLR KLNHQNIIKL FAVEETGGSR QKVLVMEYCS SGSLLSVLES bmy_02370T0/1-558 VQ-------- ---------- ------GASR QKALVMEYCA SGSLLSVLES BACU016488/1-671 ---------- ---------- ------GGSR QKVLVMEYCA SGSLMSVLEG 101 150 ENSP00000356087/1-716 PENAFGLPED EFLVVLRCVV AGMNHLRENG IVHRDIKPGN IMRLVGEEGQ ENSBTAP00000013738/1-718 PENAFGLPED EFLVVLRCVA AGMNHLRENG IVHRDIKPGN IMRLLGEEGQ ENSTTRP00000004067/1-718 PENAFGLPED EFLVVLRCXX AGMNHLRENG IVHRDIKPGN IMRLVGEEGQ bmy_02370T0/1-558 PENAFGLPED EFLVVLRCVV AGMNHLRENG IVHRDIKPGN IMRLVGEEGQ BACU016488/1-671 PENAFGLPED EFLVVLRCVV AGMNHLRENG IVHRDIKPGN IMRLVGEEGQ 151 200 ENSP00000356087/1-716 SIYKLTDFGA ARELDDDEKF VSVYGTEEYL HPDMYERAVL RKPQQKAFGV ENSBTAP00000013738/1-718 SIYKLTDFGA ARELDDDEKF VSVYGTEEYL HPDMYERAVL RKPQQKAFGV ENSTTRP00000004067/1-718 SIYKLTDFGA ARELDDDEKF VSVYGTEEYL HPDMYERAVL HKPQQKAFGV bmy_02370T0/1-558 SIYKLTDFGA ARELDDDEKF VSVYGTEEYL ---------- ---------- BACU016488/1-671 SIYKLTDFGA ARELDDDEKF VSVYGTEEYL HPAMYERAVL RKPQQKAFGV 201 250 ENSP00000356087/1-716 TVDLWSIGVT LYHAATGSLP FIPFGGPRRN KEIMYRITTE KPAGAIAGAQ ENSBTAP00000013738/1-718 TVDLWSIGVT LYHAATGSLP FVPFGGPRRN KEIMYRITTE KPAGAIAGTQ ENSTTRP00000004067/1-718 AVDLWSIGVT LYHAATGSLP FVPFGGPRRN KEIMYRITTE KPAGAIAGTQ bmy_02370T0/1-558 ---------- ---------- ---------- ---------- ---------- BACU016488/1-671 AVDLWSIGVT LYHAATGSLP FVPFGGPRRN KEIMYRITTE KPAGAIAGTQ 251 300 ENSP00000356087/1-716 RRENGPLEWS YTLPITCQLS LGLQSQLVPI LANILEVEQA KCWGFDQFFA ENSBTAP00000013738/1-718 RRENGPLEWS YTLPITCQLS MGLQSQLVPI LANILEVEQA KCWGFDQFFA ENSTTRP00000004067/1-718 RLENGPLEWS YTLPITCQLS MGLQSQLVPI LANILEVEQA KCWGFDQFFA bmy_02370T0/1-558 ---------- ---------- ----SQLVPI LANILEVEQA KCWGFDQFFA BACU016488/1-671 RLENGPLEWS YTLPITCQLS MGLQSQLVPI LANILEVEQA KCWGFDQFFA 301 350 ENSP00000356087/1-716 ETSDILQRVV VHVFSLSQAV LHHIYIHAHN TIAIFQEAVH KQTSVAPRHQ ENSBTAP00000013738/1-718 ETSDILQRGV IHVFSLPQAV LHRVYVHAHN TIAIFLEAVY EQTGVAPQHQ ENSTTRP00000004067/1-718 ETSDILQRVV VHVFSLPQAV VHHVYIHAHN TIAIFLEAVY KQTNVAPQHQ bmy_02370T0/1-558 ETSDILQRVV VHVFSLPQAV VHHVYIHAHN TIAIFLEAVY KQTNVAPQHQ BACU016488/1-671 ETSDILQRVV VHVFSLPQAV MHHVYIHAHN TIAIFLEAVY KQTNVAPQHQ 351 400 ENSP00000356087/1-716 EYLFEGHLCV LEPSVSAQHI AHTTASSPLT LFSTAI--PK GLAFRDPALD ENSBTAP00000013738/1-718 EYLFEGHLCV LEPGLSAQHI AHTTASSPLT LFSTASEPPK GLAFRDPALD ENSTTRP00000004067/1-718 EYLFEGHLCV LEPSVSAQHI AHTTASSPLT LFSMVSETPK GLAFRDPALD bmy_02370T0/1-558 EYLFEGHLCV LEPSLSAQHI AHTTASSPLT LFSMVSETPK GLAFRDPALD BACU016488/1-671 EYLFEGHLCV LEPSLSAQHI AHTTASSPLT LFSMVSETPK GLAFRDPALD 401 450 ENSP00000356087/1-716 VPKFVPKVDL QADYNTAKGV LGAGYQALRL ARALLDGQEL MFRGLHWVME ENSBTAP00000013738/1-718 VPKFVPKVDL QADYSTAKGI LGAGYQALRL AQTLLRGQEL TVRGLHWFVE ENSTTRP00000004067/1-718 IPKFVPKVDL QSDYNTAKGV LGAGYQALRL AQALLTGQEL MLRGLHWFVE bmy_02370T0/1-558 IPKFVPKVDL QADYNTAKGV LGAGYQALRL AQALLAGQEL MLRGLHWFVE BACU016488/1-671 IPKFVPKVDL QADYNTAKGV LGAGYQALRL AQALLAGQEL MLRGLHWFVE 451 500 ENSP00000356087/1-716 VLQATCRRTL EVARTSLLYL SSSLGTERFS SVAGTPEIQE LKAAAELRSR ENSBTAP00000013738/1-718 MLQATCRRTL ELARMALLFL SSSLGPERFS GVAGVPELQD LKRTAELRSR ENSTTRP00000004067/1-718 VLQATCRRTL EVTRMALLFL SSSLGTERFS NVAGVPEIQE LKRAAELRSK bmy_02370T0/1-558 ILQATCRRTL EVTRMALLFL SSSLGTER-- ---------- ---------- BACU016488/1-671 ILQATCRRTL EVTRMALLFL SSSLGTERFS NMAGVTEIQE LKRAAELRSK 501 550 ENSP00000356087/1-716 LRTLAEVLSR CSQNITETQE SLSSLNRELV KSRDQVHEDR SIQQIQCCLD ENSBTAP00000013738/1-718 LRNLAEVLSR CSHNITETQK TLSDLCSELV KNRDQVHEDR SIQQIQCCLD ENSTTRP00000004067/1-718 LRTLAEVLSR CSHNITETKM TLSNLSSELM KNRDQVHADR SIQQIQCCLD bmy_02370T0/1-558 ---------- CSHNITETKM TLSNLSSELM KNRDQVHEDR SIQQIQCCLD BACU016488/1-671 LRTLAEVLSR CSHNITETKM TLSNLSSELM KNRDQVHEDR SIQQIQCCLD 551 600 ENSP00000356087/1-716 KMNFIYKQFK KSRMRPGLGY NEEQIHKLDK VNFSHLAKRL LQVFQEECVQ ENSBTAP00000013738/1-718 KMYLTYKQFK KSRMRPGLGY NEEQIHKLDK VNFSHLAKRL LQVFQEECVQ ENSTTRP00000004067/1-718 KMYLIYKQFK KSRMRPXXXX XXXXXXXXXX VNFSHLAKRL LQVFQEERVQ bmy_02370T0/1-558 KMYLIYKQFK KSRMRPGLGY NEEQIHKLDK VNFSHLAKRL LQVFQEERVQ BACU016488/1-671 KMYLIYKQFK KSRMRPGLGY NEEQIHKLDK VNFSHLAKRL LQVFQEERVQ 601 650 ENSP00000356087/1-716 KYQASLVTHG KRMRVVHETR NHLRLVGCSV AACNTEAQGV QESLSKLLEE ENSBTAP00000013738/1-718 KYQASLVTHG KRMRLVDETR SHLRLVGCSV AACNTEAQGA QESLSKILDR ENSTTRP00000004067/1-718 KYQASLVTHG KRMRVVHETR NHLRLVGCSV AACNTEAQGA QESLSKILDW bmy_02370T0/1-558 KYQASLVTHG KRMRVVHETR NHLRLVGCSV AACNTEAQGA QESLSKILDW BACU016488/1-671 KYQASLVTHG KRMRVVHETR NHLRLVGCSV AACNTEAQGA QESLSKILDW 651 700 ENSP00000356087/1-716 LSHQLLQDRA KGAQASPPPI APYPSPTRKD LLLHMQELCE GMKLLASDLL ENSBTAP00000013738/1-718 LSHQLLQERT QGAQASPPLT APYPSSVLKD LVLHMQELHG EMKVLASDLQ ENSTTRP00000004067/1-718 LSHQLLQDRT KGAQASPPTT APYPSPALKD LVLHMQELCK EMKVLASDLQ bmy_02370T0/1-558 LSHQLLQDRT KGAQASPPPT APYPSPALKD LVLHMQELCK EMKVLASDLQ BACU016488/1-671 LSHQLLQDRT KGAQASPPPT APYPSPALKD LVLHMQELCK EMKVLASDLQ 701 750 ENSP00000356087/1-716 DNNRIIERLN RVPAPPDV ENSBTAP00000013738/1-718 DNNRIIEGLS RIPLAPDI ENSTTRP00000004067/1-718 DNNRVIEGLS RVPSAPDI bmy_02370T0/1-558 DNNRVIEG-- -------- BACU016488/1-671 DNNRVIEGLS RVPSAPDI