KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:51:23 2014 Check: 00 .. Name: ENSBTAP00000013745/1-899 Len: 907 Check: 4221 Weight: 1.00 Name: ENSP00000257359/1-889 Len: 907 Check: 1566 Weight: 1.00 Name: ENSTTRP00000013875/1-880 Len: 907 Check: 6778 Weight: 1.00 Name: bmy_12498T0/1-845 Len: 907 Check: 4283 Weight: 1.00 Name: BACU010161/1-735 Len: 907 Check: 9428 Weight: 1.00 // 1 50 ENSBTAP00000013745/1-899 --MPRAAPRW PPLLLLLLLL TLPPLARGAP ARPGGRRPAS ALVVPKRLQS ENSP00000257359/1-889 MLPAPAAPRW PPLLLLLLLL L--PLARGAP ARPAAGGQAS ELVVPTRLPG ENSTTRP00000013875/1-880 --MPRAAPRW PPLLLLLLLL L--PLARGAP ARPGGGGPAS ALVVPTRLPG bmy_12498T0/1-845 ---------- ---------- ---------- ---------- ----MKSSGT BACU010161/1-735 ---------- ---------- ---------- ---------- ---------- 51 100 ENSBTAP00000013745/1-899 IAGEVALHLS AFGRDLELRL EPDDSFLAPE FKIARLGGSG GAAGRERE-- ENSP00000257359/1-889 SAGELALHLS AFGKGFVLRL APDDSFLAPE FKIERLGGSG RATGGERG-- ENSTTRP00000013875/1-880 GAGELALHLS AFSRYFL--R APDPTFLAPE SKADRL-CSG VAAGGXXX-- bmy_12498T0/1-845 FSGDLASAQS D--------- PRSDTVAGTG VRVSWV-SLS DPRGGETGIQ BACU010161/1-735 ---------- ---------- ---------- ---------- ---------- 101 150 ENSBTAP00000013745/1-899 LRGCIFSGTV NRDPESLAAV SLCRGLSGTF LLEGQEFTIK PQGAGRSLHQ ENSP00000257359/1-889 LRGCFFSGTV NGEPESLAAV SLCRGLSGSF LLDGEEFTIQ PQGAGGSLAQ ENSTTRP00000013875/1-880 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXFTIQ PQGAGGSLHQ bmy_12498T0/1-845 LRGCFFSGTV NGEPGSLAAV SLCRGLSGSF LLDGEEFTIQ PQGAGGSLHR BACU010161/1-735 ---------- ---MSNISTM ---------- ---------- ---------- 151 200 ENSBTAP00000013745/1-899 PHLLQRWGHV HPATA--AQP LSRASEREAQ KEEGERQERR ADTAEEEEKE ENSP00000257359/1-889 PHRLQRWGPA G------ARP LPRGPEWEVE TGEGQRQER- -------GDH ENSTTRP00000013875/1-880 PHRLQRRGPG RAAAAQ-AQP LPGAPEWEAE KGEGRRQ--- ---------- bmy_12498T0/1-845 PHRLQRWGPG RAAAAAEAQP LPGAPEWEAE KGEGQRQEE- ----EEEEEE BACU010161/1-735 ---------- ---------- ---APEGEAE KGEGQRQEE- -----AEEEE 201 250 ENSBTAP00000013745/1-899 KQEEDEEGQE EEAESSSEPP PTLGAKSRTK RFVSEDRFVE MLLVADASMV ENSP00000257359/1-889 QEDSEEESQE EEAEGASEPP PPLGATSRTK RFVSEARFVE TLLVADASMA ENSTTRP00000013875/1-880 --EDDEQGKD EEAEGASEPP PTLGATSRTK RFVSEARFVE TLLVADASMA bmy_12498T0/1-845 EEEEDEQGKQ EEAEGASEPP PTLGATSRTK RFVSEARFVE TLLVADASMA BACU010161/1-735 EEEEDEQGKE EEAEGASEPP PTLGATSRTK RFVSEARFVE TLLVADASMA 251 300 ENSBTAP00000013745/1-899 AFYGEDLENH ILMLMSMAAR IYKHPSIGNS VNLVMMKLVI LGDEKLGPEV ENSP00000257359/1-889 AFYGADLQNH ILTLMSVAAR IYKHPSIKNS INLMVVKVLI VEDEKWGPEV ENSTTRP00000013875/1-880 AFYGADLQNH ILTLMSVAAH IYKHPSIRNS INLMVVKVLI VEDERWGPEV bmy_12498T0/1-845 AFYGADLQNH VLTLMSVAAH IYKHPSIRNS INLMVVKVLI VEDERWGPEV BACU010161/1-735 AFYGADLQNH VLTLMSVAAH IYKHPSIRNS INLMVVKVLI VEDERWGPEV 301 350 ENSBTAP00000013745/1-899 SDNSGLILRD FCAWQRDINQ PRDRHPEHFD TAILLTRENL CGQEGRCDTL ENSP00000257359/1-889 SDNGGLTLRN FCNWQRRFNQ PSDRHPEHYD TAILLTRQNF CGQEGLCDTL ENSTTRP00000013875/1-880 SDNGGLTLRN FCRWQRRFNQ PSDRHPEHFD TAILLTRQNF CGKEGLCDTL bmy_12498T0/1-845 SDNGGLTLRN FCSWQRRFNQ PSDRHPEHFD TAILLTRQNF CGKEGLCDTL BACU010161/1-735 SDNGGLTLRN FCSWQRRFNQ PSDRHPEHFD TAILLTRQNF CGKEGLCDTL 351 400 ENSBTAP00000013745/1-899 GVANVGTICE PSKSCAVIQD QGLQAAYTLA HELGHVLGMP HDDSKLCTRL ENSP00000257359/1-889 GVADIGTICD PNKSCSVIED EGLQAAHTLA HELGHVLSMP HDDSKPCTRL ENSTTRP00000013875/1-880 GVADIGTICD PSKSCSVIED EGLQAAYTLA HELGHV-SMP -DDYKPCARL bmy_12498T0/1-845 GVADIGTICD PSKSCSVIED EGLQAAYTLA HELGHVLSMP HDDSKPCARL BACU010161/1-735 GVADIGTICD PSKSCSVIED EGLQAAYTLA HELGHVLSMP HDDSKPCARL 401 450 ENSBTAP00000013745/1-899 FGPLDKHHMM APLYVQLNKT RPWSPCSASF LREFLDRGYG DCLLDAPSWA ENSP00000257359/1-889 FGPMGKHHVM APLFVHLNQT LPWSPCSAMY LTELLDGGHG DCLLDAPAAA ENSTTRP00000013875/1-880 FGPLGKHHMM APLFVHLNKT LPWSPCSAMY LTELLDGGHG DCLLDAPTSA bmy_12498T0/1-845 FGPLGKHHMM APLFVHLNKT LPWSPCSAMY LTELLDGGHG DCLLDAPTSA BACU010161/1-735 FGPLGKRHMM APLFVHLNKT LPWSPCSAMY LTELLDGGHG DCLLDAPTSA 451 500 ENSBTAP00000013745/1-899 MALPTDLPGR RPLYDLDQQC KQIFGLGFRH CPNSSDQNTC AQLWCRIDGP ENSP00000257359/1-889 LPLPTGLPGR MALYQLDQQC RQIFGPDFRH CPNTSAQDVC AQLWCHTDGA ENSTTRP00000013875/1-880 LPLPTGLPGR RALYELDQQC KQIFGLGFRH CPNTSAQDIC AQLWCHMDGA bmy_12498T0/1-845 LPLPTGLPGR RALYELDQQC KQIFGLGFRH CPNTSAQDIC AQLWCHMDGA BACU010161/1-735 LPLPTGLPGR RALYELDQQC KQIFGLGFRH CPNTSAQDIC AQLWCHMDGA 501 550 ENSBTAP00000013745/1-899 DPLCHTRNAS LPWADGTPCG PGHLCWEGSC LPEEEVEKPE AVVDGGWAPW ENSP00000257359/1-889 EPLCHTKNGS LPWADGTPCG PGHLCSEGSC LPEEEVERPK PVADGGWAPW ENSTTRP00000013875/1-880 EPLCHTKNGS LPWADGTPCG PGSLCLDGSC LPEEEVEKPK AVVDGGWSPW bmy_12498T0/1-845 EPLCHTKNGS LPWADGTPCG PGSLCLDGSC LPQEEVEKPK AVVDGGWSPW BACU010161/1-735 EPLCHTKNGS LPWADGTPCG PGSLCLDGSC LPQEEVEKPK AVVDGGWSPW 551 600 ENSBTAP00000013745/1-899 GPWGACSRTC GGGVQFSYRE CTNPEPQNGG KYCLGQRAKY QSCHTEECPP ENSP00000257359/1-889 GPWGECSRTC GGGVQFSHRE CKDPEPQNGG RYCLGRRAKY QSCHTEECPP ENSTTRP00000013875/1-880 GPWGECSRTC GGGVQFSHRE CEDPEPQNGG RYCLGRRAKY QSCHTEECPP bmy_12498T0/1-845 GPWGECSRTC GGGVQFSHRE CEDPEPRNGG RYCLGRRAKY QSCHTEECPP BACU010161/1-735 GPWGECSRTC GGGVQFSHRE CEDPEPRNGG RYCLGRRAKY QSCHTEECPP 601 650 ENSBTAP00000013745/1-899 DGKSFREQQC EKFNAYNYTD VEGNLLQWVP KYAGVSPRDR CKLFCLARGR ENSP00000257359/1-889 DGKSFREQQC EKYNAYNYTD MDGNLLQWVP KYAGVSPRDR CKLFCRARGR ENSTTRP00000013875/1-880 DGKSFREQQC EKYNAYNYTD VDGNLLQWVP KYAGVSPRDR CKLFCRARGR bmy_12498T0/1-845 DGKSFRGQQC EKYNAYNYTD VEGNLLQWVP KYAGVSPRDR CKLFCRARGR BACU010161/1-735 DGKSFREQQC EKYNAYNYTD MEGNLLQWVP KYAGVSPRDR CKLFCRARGR 651 700 ENSBTAP00000013745/1-899 SEFRIFEDKV IDGTLCGPDT LAICVRGQCV KAGCDHVLDS PKKLDKCGVC ENSP00000257359/1-889 SEFKVFEAKV IDGTLCGPET LAICVRGQCV KAGCDHVVDS PRKLDKCGVC ENSTTRP00000013875/1-880 SEFKVFEAKV IDGTLCGPET LAICVRGQCV KAGCDHVVDS PRKLDKCGVC bmy_12498T0/1-845 SEFKVFEAKV IDGTPCGPET LAICVRGQCV KAGCDHVVDS PRKLDKCGVC BACU010161/1-735 SEFKVFEAKV IDGTPCGPET LAICVRGQCV KAGCDHVVDS PRKLDKCGVC 701 750 ENSBTAP00000013745/1-899 GGKGDSCRKV SGSFSPSSYG YNDIVTFPAG STNIDVKQRS PPGVQNDGNY ENSP00000257359/1-889 GGKGNSCRKV SGSLTPTNYG YNDIVTIPAG ATNIDVKQRS HPGVQNDGNY ENSTTRP00000013875/1-880 GGKGNSCRKV SGSLNPSSYG YNDIVTIPAG ATNIDVKQRS HPGIQNDGNY bmy_12498T0/1-845 GGKGNSCRKV SSCHS---YG YSDIVTIPAG ATNIDVKQRS HPGVQNDGNY BACU010161/1-735 GGKGNSCRKV SGSLNPSSYG YSDIVTIPAG ATNIDVKQRS HPGVQNDGNY 751 800 ENSBTAP00000013745/1-899 LALKTTDGEY LLNGNNAIFP TEQYILLNGT VLRYSGAFTS LERLQSFQSL ENSP00000257359/1-889 LALKTADGQY LLNGNLAISA IEQDILVKGT ILKYSGSIAT LERLQSFRPL ENSTTRP00000013875/1-880 LALKTADGQY LLNGNLAISA VEQDILVKGT ILKYSGSITS LERLQSFWPL bmy_12498T0/1-845 LALKTADGQY LLNGNLAISA VEQDILVKGT ILKYSGSITS LERLQSFWPL BACU010161/1-735 LALKTADGQY LLNGNLAISA VEQDILVKGT ILKYSGSITS LERLQSFWPL 801 850 ENSBTAP00000013745/1-899 PEPLTLQLLK VHGD--PLKV KYTFFVPDDM NSSKQSSRER TTTNVIQALL ENSP00000257359/1-889 PEPLTVQLLT VPGEVFPPKV KYTFFVPNDV DFSMQSSKER ATTNIIQPLL ENSTTRP00000013875/1-880 PEPLTVQLLT APGELFPPKV KYTFFVPNDV NFSIQSSKER ATTNVIQPLL bmy_12498T0/1-845 PEPLTVQLLT VPGEVFPPKV KYTFFVPNDV NFSIQSSKER ATTNVIQPLL BACU010161/1-735 PEPLTVQLLT VPGEVFPPKV KYTFFVPNDV NFSIQSSRER ATTNVIQPLL 851 900 ENSBTAP00000013745/1-899 NTQWVLGDWS ECSHSCGAGW QRRMVQCRDP SGQTSAACDE ALKPEDTKLC ENSP00000257359/1-889 HAQWVLGDWS ECSSTCGAGW QRRTVECRDP SGQASATCNK ALKPEDAKPC ENSTTRP00000013875/1-880 NAQWVLGDWS ECSSSCGAGW QRRAVECRDP GGQASTTCDE ALKPEDAKPC bmy_12498T0/1-845 NAQWVLGDWS ECSSSCGAGW QRRAVECRDP RGQASTTCDE ALKPEDAKPC BACU010161/1-735 NAQWVLGDWS ECSSSCGDGW QRRAVECRDP RGQASTTCDE ALKPEDGKPC 901 950 ENSBTAP00000013745/1-899 RSLPCFS ENSP00000257359/1-889 ESQLCPL ENSTTRP00000013875/1-880 GSQPCAP bmy_12498T0/1-845 GSQPCAL BACU010161/1-735 GSQPCAP