KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:51:29 2014 Check: 00 .. Name: BACU004859/1-467 Len: 720 Check: 4234 Weight: 1.00 Name: ENSP00000380557/1-646 Len: 720 Check: 6507 Weight: 1.00 Name: bmy_19198T0/1-719 Len: 720 Check: 8580 Weight: 1.00 Name: ENSBTAP00000013781/1-646 Len: 720 Check: 1493 Weight: 1.00 Name: ENSTTRP00000015166/1-648 Len: 720 Check: 7772 Weight: 1.00 // 1 50 BACU004859/1-467 ---------- -----MSYTG FVQGSE---- ---------- TTLHST---- ENSP00000380557/1-646 ---------- -----MSYTG FVQGSE---- ---------- TTLQST---- bmy_19198T0/1-719 MRSGGGAQLC VEGAWGIVAA FAASDEWSSC LSLRVQRRYC HELHSRMYLV ENSBTAP00000013781/1-646 ---------- -----MSYTG FVQGSE---- ---------- TTLQST---- ENSTTRP00000015166/1-648 ---------- ------VSTE FVQGSE---- ---------- TTLHST---- 51 100 BACU004859/1-467 -YSDTSAQ-- -----PTC-- ---------- ---DYGYGSW SSGTNRGYEN ENSP00000380557/1-646 -YSDTSAQ-- -----PTC-- ---------- ---DYGYGTW NSGTNRGYEG bmy_19198T0/1-719 LFTNHKMKAL SRDLKPLCIL HTQTQVLSPP VIMDMDLGAL GQ-TEASYEN ENSBTAP00000013781/1-646 -YSDTSAQ-- -----PTC-- ---------- ---DYGYGTW NSGTNRGYEN ENSTTRP00000015166/1-648 -YSDTTAQ-- -----PTC-- ---------- ---DYXXXXX XXXXXXXYEN 101 150 BACU004859/1-467 YGYGYGYGQD NTTNYGYGMA TSNSWEMPSS DTNANPSAMG SASADSVLSR ENSP00000380557/1-646 YGYGYGYGQD NTTNYGYGMA TSHSWEMPSS DTNANTSASG SASADSVLSR bmy_19198T0/1-719 YGYGYGYGQD NTTNYGYGMA TSNSWEMPSS DTNANPSAMG SASADSVLSR ENSBTAP00000013781/1-646 YGYGYGYGQD NTTNYGYGMA TSNSWEMPNS DTNANPSAMG SASADSVLSR ENSTTRP00000015166/1-648 YGYGYGYGQD NTTNYGYGMA TSNSWEMPSS DTNANPSAMG SASADSVLSR 151 200 BACU004859/1-467 INQRLDMVPH LETDMIQGGV YGSGGERYDS YEACDSRAVL SERDLFRSGY ENSP00000380557/1-646 INQRLDMVPH LETDMMQGGV YGSGGERYDS YESCDSRAVL SERDLYRSGY bmy_19198T0/1-719 INQRLDMVPH LETDMIQGGV YGSGGERYDS YEACDSRAVL SERDLFRSGY ENSBTAP00000013781/1-646 INQRLDMVPH LETDMIQGGV YGSGGERYDS YEACDSRAVL SERDLYRSGY ENSTTRP00000015166/1-648 INQRLDMVPH LETDMIQGGV YGSGGERYDS YEACDSRAVL SERDLYRSGY 201 250 BACU004859/1-467 DYGELDPEME VAYEGQYDAY RDQFRMRGGD TFGPRAQGWA RDSRSGRPMA ENSP00000380557/1-646 DYSELDPEME MAYEGQYDAY RDQFRMRGND TFGPRAQGWA RDARSGRPMA bmy_19198T0/1-719 DYGELDPEME MAYEGQYDAY RDQFRMRGGD TFGPRAQGWA RDSRSGRPMA ENSBTAP00000013781/1-646 DYGELDPDME MAYEGQYDAY RDQFRMRGSD TFGPRAQGWA RDSRSGRPMA ENSTTRP00000015166/1-648 DYGELDPEME MAYEGQYDAY RDQFRMRGGD TFGPRAQGWA RDSRSGRPMA 251 300 BACU004859/1-467 SGYGRVWEDP MGARGQCMPG ASRLPSLFSQ NIIPEYGMFQ GMRGGGTFPG ENSP00000380557/1-646 SGYGRMWEDP MGARGQCMSG ASRLPSLFSQ NIIPEYGMFQ GMRGGGAFPG bmy_19198T0/1-719 SGYGRVWEDP MGARGQCMPG ASRLPSLFSQ NIIPEYGMFQ GMRGGGTFPG ENSBTAP00000013781/1-646 SGYGRMWEDP MGARGQCMPG ASRLPSLFSQ NIIPEYGMFQ GMRGGGTFPG ENSTTRP00000015166/1-648 SGYGRVWEDP MGARGQCMPG ASRLPSLFSQ NIIPEYGMFQ GMRGGGTFPG 301 350 BACU004859/1-467 GSRFGFGFGN GMKQMRRTWK TWTTADFRTK KKKRKQCGSP DEPDSKATRT ENSP00000380557/1-646 GSRFGFGFGN GMKQMRRTWK TWTTADFRTK KKKRKQGGSP DEPDSKATRT bmy_19198T0/1-719 GSRFGFGFGN GMKQMRRTWK TWTTADFRTK KKKRKQCGSP DEPDSKATRT ENSBTAP00000013781/1-646 GSRFGFGFGN GMKQMRRTWK TWTTADFRTK KKKRKQCGSP DEPDSKATRT ENSTTRP00000015166/1-648 GSRFGFGFGN GMKQMRRTWK TWTTADFRTK KKKRKQCGSP DEPDSKATRT 351 400 BACU004859/1-467 DCSDNSDSDN DEGTEGEAAE GTEGAEAVEK DFRAEGEDEE GKEDGKEEGK ENSP00000380557/1-646 DCSDNSDSDN DEGTEGEATE GLEGTEAVEK GSRVDGEDEE GKEDGREEGK bmy_19198T0/1-719 DCSDNSDSDN DEGTEGEAAE GTEGAEAVEK DFRAEGEDEE GKEDGKEEGK ENSBTAP00000013781/1-646 DCSDNSDSDN DEGTEGEAAE GTEGAETVEK GSRAEGEDEE GKEEGKEGGK ENSTTRP00000015166/1-648 DCSDNSDSDN DEGTEGEAAE GTEGAEPVEK GFRAEGEDEE GKEDGKEEGK 401 450 BACU004859/1-467 EDAEKGSLST QDESGQTKRK LQAGKKSQDK QKKRQRDRMV ERAPALA--- ENSP00000380557/1-646 EDPEKGALTT QDENGQTKRK LQAGKKSQDK QKKRQRDRMV ERIQFVCSLC bmy_19198T0/1-719 EDAEKGSLST QDESGQTKRK LQAGKKSQDK QKKRQRDRMV ERIQFVCSLC ENSBTAP00000013781/1-646 EDAEKGVLSA QDESGQAKRK LQAGKKSLDK QKKRQRDRMV ERIQFVCSLC ENSTTRP00000015166/1-648 EDAEKGALST QDESGQTKRK LQAGKKNQDK QKKRQRDRMV ERIQFVCSLC 451 500 BACU004859/1-467 ---------- ---------- ---------- ---------- ---------- ENSP00000380557/1-646 KYRTFYEDEM ASHLDSKFHK EHFKYVGTKL PKQTADFLQE YVTNKTKKTE bmy_19198T0/1-719 KYRTFYEDEM ASHLDSKFHK EHFKYVGTKL PKQTADFLQD YVANKTKKTE ENSBTAP00000013781/1-646 KYRTFYEDEM ASHLDSKFHK EHFKYVGTKL PKQTADFLQE YVANKTKKTE ENSTTRP00000015166/1-648 KYRTFYEDEM ASHLDSKFHK EHFKYVGTKL PKQTADFLQD YVANKTKKTE 501 550 BACU004859/1-467 ---------- ---------- ---------- ---------- -----LASSS ENSP00000380557/1-646 ELRKTVEDLD GLIHQIYRDQ DLT------- --------QE IAMEHFVKKV bmy_19198T0/1-719 ELRKTVEDLD GLIQQIYRDQ DLTQGRVTEN SLRPTWKWQE IAMEHFVKKV ENSBTAP00000013781/1-646 ELRKTVEDLD GLIQQIYRDQ DLT------- --------QE IAMEHFVKKV ENSTTRP00000015166/1-648 ELRKTVEDLD GLIQQIYRDQ DLT------- --------QE IAMEHFVKKV 551 600 BACU004859/1-467 SASDSCSCWT FLS------- ---------- ---------- ---------- ENSP00000380557/1-646 EAAHCAACDL FIPMQFGIIQ KHLKTMDHNR NRRLMMEQSK KSSLMVARSI bmy_19198T0/1-719 EAAHCAACDL FIPMQFGIIQ KHLKTMDHNR NRRLMMEQSK KSSLMVARSI ENSBTAP00000013781/1-646 EAAHCAACDL FIPMQFGIIQ KHLKTMDHNR NRRLMMEQSK KSSLMVARSI ENSTTRP00000015166/1-648 EAAHCAACDL FIPMQFGIIQ KHLKTMDHNR NRRLMMEQSK KSSLMVARSI 601 650 BACU004859/1-467 ---------- ---LAGAWPL -GSPDKADPV AQ-----IRT SGRGSSLCVL ENSP00000380557/1-646 LNNKLISKKL ERYLKGENPF TDSPEEEKEQ EEAEGGALDE GAQGEAAGIS bmy_19198T0/1-719 LNNKLISKKL ELYLKGENPF TDSPEEEKEQ EEAEGSALDE GALVEAAGVA ENSBTAP00000013781/1-646 LNNKLISKKL ERYLKGENPF TDSPEEEKEQ EEAEGGALDE GALVEAAGVA ENSTTRP00000015166/1-648 LNNKLISKKL ERYLKGENPF TDSPEEEKEQ EEAEGGALDE GALVEAAGVA 651 700 BACU004859/1-467 SANTGPFTRM RWPAT----- ---------- ---------W TASFTRNTLS ENSP00000380557/1-646 EGAEGVPAQP PVPPEPAPGA VSPPPPPPPE EEEEGAVPLL GGALQRQIRG bmy_19198T0/1-719 EGAEGAPAQP PVPPEPAPGA ASPPPPPPPE EDEEAAVPLL GGALERQIRG ENSBTAP00000013781/1-646 EGAEAAPAQP PVPPEPVPGA A--PPPPPPE EDEE-AVPLL GGALERQIRG ENSTTRP00000015166/1-648 EGAEGAPAQP PVPPEPAPGA ASPPPPPPPE EDEEAAVPLL GGALERQIRG 701 750 BACU004859/1-467 T--------- ---------- ENSP00000380557/1-646 IPGLDVE--- DDEEGGGGAP bmy_19198T0/1-719 IPGLDVEADD DDEEGGGGAP ENSBTAP00000013781/1-646 IPGLDVEADD DEEEGGGGAP ENSTTRP00000015166/1-648 IPGLDVEADD DDEEGGGGAP