KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:51:30 2014 Check: 00 .. Name: ENSTTRP00000013472/1-735 Len: 759 Check: 8635 Weight: 1.00 Name: BACU006784/1-582 Len: 759 Check: 9010 Weight: 1.00 Name: bmy_12007T0/1-563 Len: 759 Check: 8986 Weight: 1.00 Name: ENSP00000323527/1-735 Len: 759 Check: 7317 Weight: 1.00 Name: ENSBTAP00000013788/1-735 Len: 759 Check: 7828 Weight: 1.00 // 1 50 ENSTTRP00000013472/1-735 MAAGGAVSAT PECRLLPYAL HKWSSFSSTY LPENILVDKP NDQSSRWSSE BACU006784/1-582 ---------- ---------- ---------- ---------- ---------- bmy_12007T0/1-563 MAAGGAVAAT PECRLLPYAL HKWSSFSSTY LPENILVDKP NDQSSRWSSE ENSP00000323527/1-735 MAAGGAVAAA PECRLLPYAL HKWSSFSSTY LPENILVDKP NDQSSRWSSE ENSBTAP00000013788/1-735 MAAGGAVAAA PECRLLPYAL HKWSSFSSTY LPENILVDKP NDQSSRWSSE 51 100 ENSTTRP00000013472/1-735 SNYPPQYLIL KLERPAIVQN ITFGKYEKTH VCNLKKFKVF GGMNEENMTE BACU006784/1-582 ---------- ---------- ---------- ---------- --MNEENMTE bmy_12007T0/1-563 SNYPPQYLIL KLERPAIVQN ITFGKYEKTH VCNLKKFKVF GGMNEENMTE ENSP00000323527/1-735 SNYPPQYLIL KLERPAIVQN ITFGKYEKTH VCNLKKFKVF GGMNEENMTE ENSBTAP00000013788/1-735 SNYPPQYLIL KLERPAIVQN ITFGKYEKTH VCNLKKFKVF GGMNEENMTE 101 150 ENSTTRP00000013472/1-735 LLSSGLKNDY NKETFTLKHK IDEQMFPCRF IKIVPLLSWG PSFNFSIWYV BACU006784/1-582 LLSSGLKNDY NKETFTLKHK IDEQMFPCRF IKIVPLLSWG PSFNFSIWYV bmy_12007T0/1-563 LLS------- ---------- ---------- ---------- ---------- ENSP00000323527/1-735 LLSSGLKNDY NKETFTLKHK IDEQMFPCRF IKIVPLLSWG PSFNFSIWYV ENSBTAP00000013788/1-735 LLSSGLKNDY NKETFTLKHK IDEQMFPCRF IKIVPLLSWG PSFNFSIWYV 151 200 ENSTTRP00000013472/1-735 ELSGIDDPDV VQPCLNWYSK YREQEAIRLC LKHFRQHNYT EAFESLQKKT BACU006784/1-582 ELSGIDDPDV VQPCLNWYSK YREQEAIRLC LKHFRQHNYT EAFESLQKKT bmy_12007T0/1-563 ---------- ---------- ---------- ----RQHNYT EAFESLQKKT ENSP00000323527/1-735 ELSGIDDPDI VQPCLNWYSK YREQEAIRLC LKHFRQHNYT EAFESLQKKT ENSBTAP00000013788/1-735 ELSGIDDPDV VQPCLNWYSK YREQEAIRLC LKHFRQHNYT EAFESLQKKT 201 250 ENSTTRP00000013472/1-735 KIALEHPMLT DLHDXXXXXX XXXXXXXXXX XXXXXGLFNQ YISQQEYKPR BACU006784/1-582 KIALEHPMLT DLHDKLVLKG DFDACEELIE KAVNDGLFNQ YISQQEYKPR bmy_12007T0/1-563 KIALEHPMLT DLHDKLVLKG DFDACEELIE KAVNDGLFNQ YISQQEYKPR ENSP00000323527/1-735 KIALEHPMLT DIHDKLVLKG DFDACEELIE KAVNDGLFNQ YISQQEYKPR ENSBTAP00000013788/1-735 KIALEHPMLT DLHDKLVLKG DFDACEELIE KAVNDGLFNQ YISQQEYKPR 251 300 ENSTTRP00000013472/1-735 WSQIIPKSTK GDGEDNRPGM RGGHQMVIDV QTXXXXX--- --------XX BACU006784/1-582 WSQIIPKSTK GDGEDNRPGM RGGHQMVIDV QTEVNSIQFA SFLEASSKFS bmy_12007T0/1-563 WSQIIPKSTK GDGEDNRPGM RGGHQMVIDV QTA------- ---------- ENSP00000323527/1-735 WSQIIPKSTK GDGEDNRPGM RGGHQMVIDV QTETVYL--- --------FG ENSBTAP00000013788/1-735 WSQIIPKSTK GDGEDNRPGM RGGHQMVIDV QTETVYL--- --------FG 301 350 ENSTTRP00000013472/1-735 XXXXXXXXXX ---------- ---XXXXXXX XXXXXXXXXX XXXXNGPSAR BACU006784/1-582 TRSGTSSSSS SPVASGAFPS TGYLGRASAS LLKLVGLSAP RWFKNGPSAR bmy_12007T0/1-563 -------ISD ---------- ------YKVK -NKLKQNSNS SNEKNGPSAR ENSP00000323527/1-735 GWDGTQDLAD ---------- ---FWAYSVK ENQWTCISRD TEKENGPSAR ENSBTAP00000013788/1-735 GWDGTQDLAD ---------- ---FWAYSVK ENQWTCISRD TEKENGPSAR 351 400 ENSTTRP00000013472/1-735 SCHKMCIDIQ RRQIYTLGRY LDSSVRNSKS LKSDFYRYDI DTNTWMLLSE BACU006784/1-582 SCHKMCIDIQ RRQIYTLGRY LDSSVRNSKS LKSDFYRYDI DTNTWMLLSE bmy_12007T0/1-563 SCHKMCIDIQ RRQIYTLGRY LDSSVRNSKS LKSDFYRYDI DTNTWMLLSE ENSP00000323527/1-735 SCHKMCIDIQ RRQIYTLGRY LDSSVRNSKS LKSDFYRYDI DTNTWMLLSE ENSBTAP00000013788/1-735 SCHKMCIDIQ RRQIYTLGRY LDSSVRNSKS LKSDFYRYDI DTNTWMLLSE 401 450 ENSTTRP00000013472/1-735 DTAADGGPKL VFDHQMCMDS EKHMIYTFGG RILTCNGSVD DSRASEPQFS BACU006784/1-582 DTAADGGPKL VFDHQMCMDS EKHMIYTFGG RILTCNGSVD DSRASEPQFS bmy_12007T0/1-563 DTAADGGPKL VFDHQ----- ---------- ---------- ---------- ENSP00000323527/1-735 DTAADGGPKL VFDHQMCMDS EKHMIYTFGG RILTCNGSVD DSRASEPQFS ENSBTAP00000013788/1-735 DTAADGGPKL VFDHQMCMDS EKHMIYTFGG RILTCNGSVD DSRASEPQFS 451 500 ENSTTRP00000013472/1-735 GLFAFNCQCQ TWKLLREDSC NAGPEDIQSR IGHCMLFHSK NRCLYVFGGQ BACU006784/1-582 GLFAFNCQCQ TWKLLREDSC NAGPEDIQSR IGHCMLFHSK NRCLYVFGGQ bmy_12007T0/1-563 ---------- ---------- ---------- ---------K NRCLYVFGGQ ENSP00000323527/1-735 GLFAFNCQCQ TWKLLREDSC NAGPEDIQSR IGHCMLFHSK NRCLYVFGGQ ENSBTAP00000013788/1-735 GLFAFNCQCQ TWKLLREDSC NAGPEDIQSR IGHCMLFHSK NRCLYVFGGQ 501 550 ENSTTRP00000013472/1-735 RSKTYLNDFF SYDVDSDHVD IISDGTKKDS GMVPMTGFTQ RATIDPELNE BACU006784/1-582 RSKTYLNDFF SYDVDSDHVD IISDGTKKDS GMVPMTGFTQ RATIDPELNE bmy_12007T0/1-563 RSKTYLNDFF SYDVDSDHVD IISDGTKKDS GMVPMTGFTQ RATIDPELNE ENSP00000323527/1-735 RSKTYLNDFF SYDVDSDHVD IISDGTKKDS GMVPMTGFTQ RATIDPELNE ENSBTAP00000013788/1-735 RSKTYLNDFF SYDVDSDHVD IISDGTKKDS GMVPMTGFTQ RATIDPELNE 551 600 ENSTTRP00000013472/1-735 IHVLSGLSKD KEKREENVRN SFWIYDIVRN SWSCVYKNDQ AAKDNPSKSL BACU006784/1-582 IHVLSGLSKD KEKREENVRN SFWIYDIVRN SW-------- ---------- bmy_12007T0/1-563 IHVLSGLSKD KEKREENVRN SFWIYDIVRN SWSCVYKNDQ AAKDNPSKSL ENSP00000323527/1-735 IHVLSGLSKD KEKREENVRN SFWIYDIVRN SWSCVYKNDQ AAKDNPTKSL ENSBTAP00000013788/1-735 IHVLSGLSKD KEKREENVRN SFWIYDIVRN SWSCVYKNDQ AAKDNPSKSL 601 650 ENSTTRP00000013472/1-735 QEEEPCPRFA HQLVYDELHK VHYLFGGNPG KSCSPKMRLD DFWSLKLCRP BACU006784/1-582 ---------- ---------- ---------- ---------- ---------- bmy_12007T0/1-563 QEEEPCPRFA HQLVYDELHK VHYLFGGNPG KSCSPKMRLD DFWSLKLCRP ENSP00000323527/1-735 QEEEPCPRFA HQLVYDELHK VHYLFGGNPG KSCSPKMRLD DFWSLKLCRP ENSBTAP00000013788/1-735 QEEEPCPRFA HQLVYDELHK VHYLFGGNPG KSCSPKMRLD DFWSLKLCRP 651 700 ENSTTRP00000013472/1-735 SKDYLLRHCK YLIRKHRFEE KAQMDPLSAL KYLQNDLYIT VDHSDPEETK BACU006784/1-582 ---------- -------FEE KAQMDPLSAL KYLQNDLYIT VDHSDPEETK bmy_12007T0/1-563 SKDYLLRHCK YLIRKHRFEE KAQMDPLSAL KYLQNDLYIT VDHSDPEETK ENSP00000323527/1-735 SKDYLLRHCK YLIRKHRFEE KAQVDPLSAL KYLQNDLYIT VDHSDPEETK ENSBTAP00000013788/1-735 SKDYLLRHCK YLIRKHRFEE KAQMDPLSAL KYLQNDLYIT VDHSDPEETK 701 750 ENSTTRP00000013472/1-735 EFQLLASALF KSGSDFTALG FSDVDHTYAQ RTQLFDTLVN FFPDSMTPPK BACU006784/1-582 EFQLLASALF KSGSDFTALG FSDVDHTYAQ RTQLFDTLVN FFPDSMTPPK bmy_12007T0/1-563 EFQLLASALF KSGSDFTALG FSDVDHTYAQ RTQLFDTLVN FFPDSMTPPK ENSP00000323527/1-735 EFQLLASALF KSGSDFTALG FSDVDHTYAQ RTQLFDTLVN FFPDSMTPPK ENSBTAP00000013788/1-735 EFQLLASALF KSGSDFTALG FSDVDHTYAQ RTQLFDTLVN FFPDSMTPPK 751 800 ENSTTRP00000013472/1-735 GNLVDLITL BACU006784/1-582 GNLVDLITL bmy_12007T0/1-563 GNLVDLITL ENSP00000323527/1-735 GNLVDLITL ENSBTAP00000013788/1-735 GNLVDLITL