KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:51:31 2014 Check: 00 .. Name: ENSP00000267101/1-1342 Len: 1342 Check: 1836 Weight: 1.00 Name: ENSBTAP00000013790/1-1336 Len: 1342 Check: 8063 Weight: 1.00 Name: bmy_03933T0/1-960 Len: 1342 Check: 430 Weight: 1.00 Name: BACU008127/1-1298 Len: 1342 Check: 1990 Weight: 1.00 Name: ENSTTRP00000015557/1-1336 Len: 1342 Check: 5452 Weight: 1.00 // 1 50 ENSP00000267101/1-1342 MRANDALQVL GLLFSLARGS EVGNSQAVCP GTLNGLSVTG DAENQYQTLY ENSBTAP00000013790/1-1336 MRVNRALQVL GFLLSLARGS EVGNSQAVCP GTLNGLSVTG DAENQYQTLH bmy_03933T0/1-960 MRANGALQVL GFLLSLARGS EVGNSQAVCP GTLNGLSVTG DAENQYQTLY BACU008127/1-1298 MRANGALQVL GFLLSLAQGS EVGNSQAVCP GTLNGLSVTG DAENQYQTLY ENSTTRP00000015557/1-1336 MRANGALQVL GFLLSLARGS EVGNSQAVCP GTLNGLSVTG DAENQYQTLY 51 100 ENSP00000267101/1-1342 KLYERCEVVM GNLEIVLTGH NADLSFLQWI REVTGYVLVA MNEFSTLPLP ENSBTAP00000013790/1-1336 KLYEKCEVVM GNLEIVLTGH NADLSFLQWI REVTGYVLVA MNEFSTLPLP bmy_03933T0/1-960 KLYERCEVVM GNLEIVLTGH NADLSFLQWI REVTGYVLVA MNEFSTLPLP BACU008127/1-1298 KLYERCEVVM GNLEIVLTGH NADLSFLQWI REVTGYVLVA MNEFSTLPLP ENSTTRP00000015557/1-1336 KLYERCEVVM GNLEIVLTGH NADLSFLQWI REVTGYV-VA MNE-STLPLP 101 150 ENSP00000267101/1-1342 NLRVVRGTQV YDGKFAIFVM LNYNTNSSHA LRQLRLTQLT EILSGGVYIE ENSBTAP00000013790/1-1336 NLRVVRGTQV YDGKFAIFVM LNYNTNSSHA LRQLRLTQLT EILSGGVYIE bmy_03933T0/1-960 NLRVVRGTQV YDGKFAIFVM LNYNTNSSHA LRQLRFTQLT EILSGGVYIE BACU008127/1-1298 NLRVVRGTQV YDGKFAIFVM LNYNTNSSHA LRQLRFTQLT EILSGGVYIE ENSTTRP00000015557/1-1336 NLRVVRGTQV YDGKFAIFVM LNYNTNSSHA LRQLRFTQLT EILSGGVYIE 151 200 ENSP00000267101/1-1342 KNDKLCHMDT IDWRDIVRDR DAEIVVKDNG RSCPPCHEVC KGRCWGPGSE ENSBTAP00000013790/1-1336 KNEKLCHMDT IDWRDIVRDR DAEIVVKNNG KTCPPCHEAC KGRCWGPGPE bmy_03933T0/1-960 KNDKLCHMDT VDWRDIVRDR DAEIVVKDNG RTCPPCHEVC KGRCWGPGPE BACU008127/1-1298 KNDKLCHMDT VDWRDIVRDR DAEIVVKDNG R--------- ---------- ENSTTRP00000015557/1-1336 KNDKLCHMDT VDWRDIVRDR EAEIVVKDNG RTCPPCHEVC KGRCWGPGPE 201 250 ENSP00000267101/1-1342 DCQTLTKTIC APQCNGHCFG PNPNQCCHDE CAGGCSGPQD TDCFACRHFN ENSBTAP00000013790/1-1336 DCQTLTKTIC APQCNGHCFG PNPNQCCHDE CAGGCSGPQN TDCFACRLFN bmy_03933T0/1-960 DCQTLTKTIC APQCNGHCFG PNPNQCCHDE CAGGCSGPQD TDCFACRLFN BACU008127/1-1298 ---TLTKTIC APQCNGHCFG PNPNQCCHDE CAGGCSGPQD TDCFACRLFN ENSTTRP00000015557/1-1336 DCQTLTKTIC APQCNGHCFG PNPNQCCHDE CAGGCSGPQD TDCFACRLFN 251 300 ENSP00000267101/1-1342 DSGACVPRCP QPLVYNKLTF QLEPNPHTKY QYGGVCVASC PHNFVVDQTS ENSBTAP00000013790/1-1336 DSGACVRQCP QPLVYNKLTF QLEPNPHTKY QYGGVCVASC PHNFVVDQTS bmy_03933T0/1-960 DSGACVRQCP QPLVYNKLTF QLEPNPHTKY QYGGVCVASC PHNFVVDQTS BACU008127/1-1298 DSGACVRQCP QPLVYNKLTF QLEPNPHTKY QYGGVCVASC PHNFVVDQTS ENSTTRP00000015557/1-1336 DSGACVRQCP QPLVYNKLTF QLEPNPHTKY QYGGVCVASC PHNFVVDQTS 301 350 ENSP00000267101/1-1342 CVRACPPDKM EVDKNGLKMC EPCGGLCPKA CEGTGSGSRF QTVDSSNIDG ENSBTAP00000013790/1-1336 CVRACPPDKM EVDKNGLKIC EPCGGLCPKA CEGTGSGSRF QTVDSSNIDG bmy_03933T0/1-960 CVRACPPDKM EVDKNGLKMC EPCGGLCPKA CEGTGSGSRF QTVDSSNIDG BACU008127/1-1298 CVRACPPDKM EVDKNGLKMC EPCGGLCPKA CEGTGSGSRF QTVDSSNIDG ENSTTRP00000015557/1-1336 CVRACPPDKM EVDKNGLKIC EPCGGLCPKA CEGTGSGSRF QTVDSSNIDG 351 400 ENSP00000267101/1-1342 FVNCTKILGN LDFLITGLNG DPWHKIPALD PEKLNVFRTV REITGYLNIQ ENSBTAP00000013790/1-1336 FVNCTKILGN LDFLITGLNG DPWHKIPALD PEKLNVFRTV REITGYLNIQ bmy_03933T0/1-960 FVNCTKILGN LDFLITGLNG LPEHPVLA-- ---------- ---------- BACU008127/1-1298 FVNCTKILGN LDFLITGLNG DPWHKIPALN PEKLSVFRTV REITGYLNIQ ENSTTRP00000015557/1-1336 FVNCTKILGN LDFLITGLNG DPWHKIPALD PEKLNVFRTV REITGYLNIQ 401 450 ENSP00000267101/1-1342 SWPPHMHNFS VFSNLTTIGG RSLYNRGFSL LIMKNLNVTS LGFRSLKEIS ENSBTAP00000013790/1-1336 SWPPHMHNFS VFSNLTTIGG RSLYNRGFSL LIMKNLNVTS LGFRSLKEIS bmy_03933T0/1-960 --SPHAQLQC LFQPDNHWGP KPL------- ---QNLNVTS LGLRSLKEIS BACU008127/1-1298 SWPPHMHNFS VFSNLTTIGG RSLYNRGFSL LIMKNLNVTS LGLRSLKEIS ENSTTRP00000015557/1-1336 SWPPHMHNFS VFSNLTTIGG RSLYNRGFSL LIMKNLNVTS LGLRSLKEIS 451 500 ENSP00000267101/1-1342 AGRIYISANR QLCYHHSLNW TKVLRGPTEE RLDIKHNRPR RDCVAEGKVC ENSBTAP00000013790/1-1336 AGRIYISANR QLCYHHSLNW TRLLRGPSEE RLDIKHNRPR RDCVAEGKVC bmy_03933T0/1-960 AGRIYISANR QLCYHHSLNW TRLLRGPSEE RLDIKHNRPR RDCVAEGKVC BACU008127/1-1298 AGRIYISANR QLCYHHSLNW TRLLRGPSEE RLDIKHNRPR RDCVAEGKVC ENSTTRP00000015557/1-1336 AGRIYISANR QLCYHHSLNW TRLLRGPSEE RLDIKHNRPR RDCVAEGKVC 501 550 ENSP00000267101/1-1342 DPLCSSGGCW GPGPGQCLSC RNYSRGGVCV THCNFLNGEP REFAHEAECF ENSBTAP00000013790/1-1336 DPLC-SGGCW GPGPGQCLSC RNYSRGGVCV THCNFLNGEP REFAHEAECF bmy_03933T0/1-960 DPLCSSGGCW GPGPSQCLSC RNYSRGGVCV THCNFLNGEP REFAHEAECF BACU008127/1-1298 DPLCSSGGCW GPGPSQCLSC RNYSRGGVCV THCNFLNGEP REFAHEAECF ENSTTRP00000015557/1-1336 DPLCSSGGCW GPGPSQCLSC RNYSRGGVCV THCNFLNGEP REFAHEAECF 551 600 ENSP00000267101/1-1342 SCHPECQPME GTATCNGSGS DTCAQCAHFR DGPHCVSSCP HGVLGAKGPI ENSBTAP00000013790/1-1336 SCHQECQPME GTVTCNGSGS DACAQCAHFR DGPHCVSSCP FGVLGAKGPI bmy_03933T0/1-960 SCHPECQPLE GTATCNGS-- ---VQC---- ---------- ------KGP- BACU008127/1-1298 SCHPECQPLE GTATCNGSGS DACAQCAHFR DGPHCVSSCP FGVLGAKGPI ENSTTRP00000015557/1-1336 SCHPECQPME GTTTCNGSGS DACAQCAHFR DGPHCVSSCP FGVLGAKGPI 601 650 ENSP00000267101/1-1342 YKYPDVQNEC RPCHENCTQG CKGPELQDCL GQTLVLIGKT HLTMALTVIA ENSBTAP00000013790/1-1336 YKYPDAQNEC RPCHENCTQG CKGPELQDCL GQLLPLISKT HLAMALTVVV bmy_03933T0/1-960 ---------- ---------- ----ELQDCL GQTLALISKT HLAMALTVVV BACU008127/1-1298 YKYPDAQNEC RPCHENCTQG ---------- --------KT HLAMALTVVV ENSTTRP00000015557/1-1336 YKYPDAQNEC RPCHENCTQG CKGPELQDCL GQTLALISKT HLAMALTVVV 651 700 ENSP00000267101/1-1342 GLVVIFMMLG GTFLYWRGRR IQNKRAMRRY LERGESIEPL DPSEKANKVL ENSBTAP00000013790/1-1336 GLAVTFLILG STFLYWRGRK IQNKRAMRRY LERGESVEPL DPSEKANKVL bmy_03933T0/1-960 GLAVIFLILG STFLYWRGRR IQNKRAMRRY LERGE----- ---------- BACU008127/1-1298 GLAVIFLILG STFLYWRGRR IQNKRAMRRY LERGESVEPL DPSEKANKVS ENSTTRP00000015557/1-1336 GLAVIFLILG STFLYWRGRR IQNKRAMRRY LERGESVEPL DPSEKANKVS 701 750 ENSP00000267101/1-1342 ARIFKETELR KLKVLGSGVF GTVHKGVWIP EGESIKIPVC IKVIEDKSGR ENSBTAP00000013790/1-1336 ARVFKETELR KLKVLGSGIF GTVHKGVWIP EGESIKIPVC IKVIEDKSGR bmy_03933T0/1-960 ---------- ---------- ---------- ---------- ---------- BACU008127/1-1298 ARIFKETELK KLKVLGSGVF GTVHKGVWIP EGESIKIPVC IKVIEDKSGR ENSTTRP00000015557/1-1336 ARIFKETELK KLKVLGSGVF GTVHKGVWIP EGESIKIPVC IKVIEDKSGR 751 800 ENSP00000267101/1-1342 QSFQAVTDHM LAIGSLDHAH IVRLLGLCPG SSLQLVTQYL PLGSLLDHVR ENSBTAP00000013790/1-1336 QSFQAVTDHM LAIGSLDHAH IVRLLGLCPG SSLQLVTQYL PLGSLLDHVR bmy_03933T0/1-960 ---------- ---------- ---------- ---------- ---------- BACU008127/1-1298 QSFQAVTDHM LAIGSLDHAH IVRLLGLCPG SSLQLITQYL PLGSLLDHVR ENSTTRP00000015557/1-1336 QSFQAVTDHM LAIGSLDHAH IVRLLGLCPG SSLQLITQYL PLGSMLDHVR 801 850 ENSP00000267101/1-1342 QHRGALGPQL LLNWGVQIAK GMYYLEEHGM VHRNLAARNV LLKSPSQVQV ENSBTAP00000013790/1-1336 QHRGALGPQL LLNWGVQIAK GMYYLEEHGM VHRNLAARNV LLKSPSQVQV bmy_03933T0/1-960 ---------- ---------- ---------- ---------- ---------- BACU008127/1-1298 QHRGALGPQL LLNWGVQIAK GMYYLEEHGM VHRNLAARNV LLKSPSQVQV ENSTTRP00000015557/1-1336 QHRGALGPQL LLNWGVQIAK GMYYLEEHGM VHRNLAARNV LLKSPSQVQV 851 900 ENSP00000267101/1-1342 ADFGVADLLP PDDKQLLYSE AKTPIKWMAL ESIHFGKYTH QSDVWSYGVT ENSBTAP00000013790/1-1336 ADFGVADLLP PDDKQLLYNE AKTPIKWMAL ESIHFGKYTH QSDVWSYGVT bmy_03933T0/1-960 ---------- ---------- ---------- ---------- ---------- BACU008127/1-1298 ADFGVADLLP PDDKQLLHSE AKTPIKWMAL ESIHFGKYTH QSDVWSYGVT ENSTTRP00000015557/1-1336 ADFGVADLLP PDDKQLLHSE TKTPIKWMAL ESIHFGKYTH QSDVWSYGVT 901 950 ENSP00000267101/1-1342 VWELMTFGAE PYAGLRLAEV PDLLEKGERL AQPQICTIDV YMVMVKCWMI ENSBTAP00000013790/1-1336 VWELMTFGAE PYAGLRLAEI PDLLEKGERL AQPQICTIDV YMVMVKCWMI bmy_03933T0/1-960 ---------- ---------- ---------- ---------- ---------- BACU008127/1-1298 VWELMTFGAE PYAGLRLAEV PDLLEKGERL AQPQICTIDV YMVMVKCWMI ENSTTRP00000015557/1-1336 VWELMTFGAE PYAGLRLAEV PDLLEKGERL AQPQICTIDV YMVMVKCWMI 951 1000 ENSP00000267101/1-1342 DENIRPTFKE LANEFTRMAR DPPRYLVIKR ESGPGIAPGP EPHGLTNKKL ENSBTAP00000013790/1-1336 DENIRPTFKE LANEFTRMAR DPPRYLVIKR ESGPGITPGA EPPPLTNKEL bmy_03933T0/1-960 ---------- ---------- ---------R ESGPGIPPGA EPPALTNKEL BACU008127/1-1298 DENIRPTFKE LANEFTRMAR DPPRYLVIKR ESGPGIPPGA EPPALTNKEL ENSTTRP00000015557/1-1336 DENIRPTFKE LANEFTRMAR DPPRYLVIKR ESGPGIPPGA EPPALTNKEL 1001 1050 ENSP00000267101/1-1342 EEVELEPELD LDLDLEAEED NLATTTLGSA LSLPVGTLNR PRGSQSLLSP ENSBTAP00000013790/1-1336 EEVELEPELD LDLELEAEEE NLA-TTLGSA LSLPIGTLNR PRGSQSLVSP bmy_03933T0/1-960 EEVELEPELD LDLELEAEEE NLA-TTLGSA LSLPLGTLTR PRGSQSLVSP BACU008127/1-1298 EEVELEPELD LDLELEAEEE NLA-TTLGSA LSLPLGTLTR PRGSQSLVSP ENSTTRP00000015557/1-1336 EEVELEPELD LDLELEAEEE NLA-TTLGSA LSLPLGTLTR PRGSQSLVSP 1051 1100 ENSP00000267101/1-1342 SSGYMPMNQG NLGESCQESA VSGSSERCPR PVSLHPMPRG CLASESSEGH ENSBTAP00000013790/1-1336 SSGYMPMNQG NLGEVGQESA VFGGNERYPR PASLHPMPRG RLASESSEGH bmy_03933T0/1-960 SSGYMPMNQG NLGEAAQKSA VRGCSERCHR PASLHPVPRG RLASESSEGH BACU008127/1-1298 SSGYMPMNQG NLGEAAQKSA VRGCSERCHR PASLHPVPRG RLASESSEGH ENSTTRP00000015557/1-1336 SSGYMPMNQG NLGEAAQKSA VRGCSERCHR PASLHPVPRG RLASESSEGH 1101 1150 ENSP00000267101/1-1342 VTGSEAELQE KVSMCRSRSR SRSPRPRGDS AYHSQRHSLL TPVTPLSPPG ENSBTAP00000013790/1-1336 VTGSEAELQE KVSMC--RSQ SRSPRPRGDS AYHSQRHSLL TPVTPQSPPG bmy_03933T0/1-960 VTGSEAELQE KVSMC--RSR SRSPRPRGDS AYHSQRHSLL TPVTPQSPPG BACU008127/1-1298 VTGSEAELQE KVSMC--RSR SRSPRLRGDS AYHSQRHSLL TPVTPQSPPG ENSTTRP00000015557/1-1336 VTGSEAELQE KVSMC--RSR SRSPRPRGDS AYHSQRHSLL TPVTPQSPPG 1151 1200 ENSP00000267101/1-1342 LEEEDVNGYV MPDTHLKGTP SSREGTLSSV GLSSVLGTEE EDEDEEYEYM ENSBTAP00000013790/1-1336 LEEEDVNGYV MPDTHIKGT- SSREGTLSSV GLSSVLGT-E DDDDEEYEYM bmy_03933T0/1-960 LEEEDVNGYV MPDAHLKGT- SSREGTLSSV GLSSVLGTEE EDDDEEYEYM BACU008127/1-1298 LEEEDVNGYV MPDAHLKGT- SSREGTLSSV GLSSVLGTEE DDDDEEYEYM ENSTTRP00000015557/1-1336 LEEEDVNGYV MPDAHLKGT- SSREGTLSSV GLSSVLGTEE EDDDDEYEYM 1201 1250 ENSP00000267101/1-1342 NRRRRHSPPH PPRPSSLEEL GYEYMDVGSD LSASLGSTQS CPLHPVPIMP ENSBTAP00000013790/1-1336 NRRRRCSPSR PPRPSSLEEL GYEYMDVGSD LSASLGSTQS CPLNPVPNMP bmy_03933T0/1-960 NRRRKCSPSR PPRPSSLEEL GYEYMDVGSD LSASLGSTQS CPLNPVPTMP BACU008127/1-1298 NRRRKCSPSR PPRPSSLEEL GYEYMDVGSD LSASLGSTQS CPLNPVPTMP ENSTTRP00000015557/1-1336 NRRRKCSSSR PPRPSSLEEL GYEYMDVGSD LSASLGSTQS CPLNPVPTMP 1251 1300 ENSP00000267101/1-1342 TAGTTPDEDY EYMNRQRDGG GPGGDYAAMG ACPASEQGYE EMRAFQGPGH ENSBTAP00000013790/1-1336 NASTTPDEDY EYMNRRRGGG GPGGDYAAMD ACPASEQGYE EMRAFQGPVL bmy_03933T0/1-960 NASTTPDEDY EYMNRRRGGG GPGGDYAAME ACPAAEQGYE EMRAFQGPVH BACU008127/1-1298 NASTTPDEDY EYMNRRRGGG GPGGDYAAME ACPAAEQGYE EMRAFQGPVH ENSTTRP00000015557/1-1336 NASTTPDEDY EYMNRRRGGG GPGGDYAAME ACPAAEQGYE EMRAFQGPVH 1301 1350 ENSP00000267101/1-1342 QAPHVHYARL KTLRSLEATD SAFDNPDYWH SRLFPKANAQ RT ENSBTAP00000013790/1-1336 HGPQVHYARL KTLRSLEATD SAFDNPDYWH SRLFPKANAQ RI bmy_03933T0/1-960 HGPQVHYARL KTLRSLEATD SAFDNPDYWH SRLFPKANAQ RT BACU008127/1-1298 HGPQVHYARL KTLRSLEATD SAFDNPDYWH SRLFPKANAQ RT ENSTTRP00000015557/1-1336 HGPQVHYARL KTLRSLEATD SAFDNPDYWH SRLFPKANAQ RT