KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:51:32 2014 Check: 00 .. Name: bmy_08564T0/1-405 Len: 674 Check: 8273 Weight: 1.00 Name: ENSTTRP00000008645/1-632 Len: 674 Check: 1755 Weight: 1.00 Name: ENSP00000362282/1-385 Len: 674 Check: 1670 Weight: 1.00 Name: BACU018004/1-667 Len: 674 Check: 4366 Weight: 1.00 Name: ENSBTAP00000013792/1-633 Len: 674 Check: 7267 Weight: 1.00 // 1 50 bmy_08564T0/1-405 ---------- ---------- ---------- -------MAL --------LN ENSTTRP00000008645/1-632 MAAQPVSRML RRVLRSSVRS CSSGALVTQP HPGEPSQPAV ------EVPS ENSP00000362282/1-385 ---MWKSWKL RTDVR--VRE GAGGSPCASS QPGSRG-PCF LPGLSSQEVS BACU018004/1-667 MAAQPVSRML RRVLRSSVRS CSSGAPVTQP HPGEPSQPAV ------EVPS ENSBTAP00000013792/1-633 MAAQPVSRVV RRVLRAGVRS CSSGAPVTQP CPGE---PVV ------EVLS 51 100 bmy_08564T0/1-405 GKRVDLVEGA KNYYKF---- --------SL SLVNR----- -------GLQ ENSTTRP00000008645/1-632 GRRRFLREHA APFSAFLTDS FGRRHSYLRI SLTEKCNLRC QYCMPEEGVP ENSP00000362282/1-385 RRRQFLREHA APFSAFLTDS FGRQHSYLRI SLTEKCNLRC QYCMPEEGVP BACU018004/1-667 GRRRFLREHA APFSAFLTDS LGRHHSYLRI SLTEKCNLRC QYCMPEDGVP ENSBTAP00000013792/1-633 RPRPFLGEHA APFSAFLTDS FGRHHSYLRI SLTERCNLRC QYCMPEEGVP 101 150 bmy_08564T0/1-405 RAPSPSILLG SEFLLLALLL ASPRARRLIP L---PVLSP- -----AQLHQ ENSTTRP00000008645/1-632 LTPKADLLTT EEILTLARLF VKEGVDKIRL TGGEPLIRPD VVDIVAQLHQ ENSP00000362282/1-385 LTPKANLLTT EEILTLARLF VKEGIDKIRL TGGEPLIRPD VVDIVAQLQR BACU018004/1-667 LTPKADLLTT EEVLTLARLF VKEGVDKIRL TGGEPLVRPD VVDIVAQLHQ ENSBTAP00000013792/1-633 LTPKADLLTT EEILTLARLF VKEGVDKIRL TGGEPLIRPD VVDIVAQLRQ 151 200 bmy_08564T0/1-405 LEGLRTIGIT TNGINLARLL PQLQKAGLSA INISLDTLVP AKFEFIVRRK ENSTTRP00000008645/1-632 LEGLRTIGIT TNGINLARLL PQLQEAGLST INISLDTLVP AKFEFIVRRK ENSP00000362282/1-385 LEGLRTIGVT TNGINLARLL PQLQKAGLSA INISLDTLVP AKFEFIVRRK BACU018004/1-667 LEGLRTIGIT TNGISLARLL PQLQKAGLSA INISLDTLVP AKFEFIVRRK ENSBTAP00000013792/1-633 LEGLRTIGIT TNGINLARLL PQLQKAGLSA INISLDTLVP AKFEFIVRRK 201 250 bmy_08564T0/1-405 GFRKVMEGIH KAIELGYSPV KVNCVVMRGL NEDELPDFVA LTEGLPLDVR ENSTTRP00000008645/1-632 GFRKVMEGIH KAIELGYSPV KVNCVVMRGL NEDELLDFVA LTEGLPLDVR ENSP00000362282/1-385 GFHKVMEGIH KAIELGYNPV KVNCVVMRGL NEDELLDFAA LTEGLPLDVR BACU018004/1-667 GFRKVMEGIH KAIELGYSPV KVNCVVMRGL NEDELPDFVA LTEGLPLDVR ENSBTAP00000013792/1-633 GFHKVMEGIH KAIELGYSPV KVNCVVMRGL NEDELLDFVA LTEGLPLDVR 251 300 bmy_08564T0/1-405 FIEYMPFDGN KWNFKKMVSY KEMLDTLRQQ WPELEKLPEE ESSTAKAFKI ENSTTRP00000008645/1-632 FIEYMPFDGN KWNFKKMVSY KEMLDTLRQQ WPELEKLPEE ESSTAKAFKI ENSP00000362282/1-385 FIEYMPFDGN KWNFKKMVSY KEMLDTVRQQ WPELEKVPEE ESSTAKAFKI BACU018004/1-667 FIEYMPFDGN KWNFRKMVSY KEMLDTLRQQ WPELEKLPEE ESSTAKAFKI ENSBTAP00000013792/1-633 FIEYMPFDGN KWNFKKMVSY KEMLDTLRQQ WPELEKLPEE ESSTAKAFKI 301 350 bmy_08564T0/1-405 PGFRGRVSFI TSMSEHFCGT CNRLRITADG NLKVCLFGNS EVSLRDHLRA ENSTTRP00000008645/1-632 PGFRGRVSFI TSMSEHFCGT CNRLRITADG NLKVCLFGNS EVSLRDHLRA ENSP00000362282/1-385 PGFQGQISFI TSMSEHFCGT CNRLRITADG NLKVCLFGNS EVSLRDHLRA BACU018004/1-667 PGFRGRVSFI TSMSEHFCGT CNRLRITADG NLKVCLFGNS EVSLRDHLRA ENSBTAP00000013792/1-633 PGFRGQVSFI TSMSEHFCGT CNRLRITADG NLKVCLFGNS EVSLRDHLRA 351 400 bmy_08564T0/1-405 GASEEELLSI IGAAVGRKKR QHAGMFSISR MKNRPMILI- ---------- ENSTTRP00000008645/1-632 GASEEELLRI IGAAVGRKKR QHAGMFNISQ MKNRPMILI- ---------- ENSP00000362282/1-385 GASEQELLRI IGAAVGRKKR QHAGMFSISQ MKNRPMILI- ---------- BACU018004/1-667 GASEEELLSV IGAAVGRKKR QHAGMFSISQ MKNRPMILIE IIVLSHRKSG ENSBTAP00000013792/1-633 GASEEELLRV IGAAVGRKKR QHAGMFNISQ MKNRPMILI- ---------- 401 450 bmy_08564T0/1-405 ---------- ---------- ELFLMCQDSP PAIPSISFRD SLHVQGLRHR ENSTTRP00000008645/1-632 ---------- ---------- ELFLMCQGSP AV--SISF-D SLHV-GLRHR ENSP00000362282/1-385 ---------- ---------- ---------- ---------- ---------- BACU018004/1-667 RGVLRVDDRY VSCPLKMELL ELFLMCQDSP PAIPSISFRA SLHVQGLRHR ENSBTAP00000013792/1-633 ---------- ---------- ELFLMRQDSP PALPS-TFRN SLRVQVLRHR 451 500 bmy_08564T0/1-405 VSFSSQMVTL WKGGRLPQIP LLAQQWLGSG LPQRHYGSHL DSDANPKCRR ENSTTRP00000008645/1-632 VSFSSXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000362282/1-385 ---------- --GG------ ---------- ---------- ---------- BACU018004/1-667 VSFSSQMVTL WKGGRLPQIP VLAQRWLGSG LPQRHYGSHL DSDANPKCLS ENSBTAP00000013792/1-633 VSFSSQMVTL WKGGGVPQAP LVAQRWLGSS LPQRHFSSHL DSDANPKCLS 501 550 bmy_08564T0/1-405 K--------- ---------- ---------- ---------- ---------- ENSTTRP00000008645/1-632 X-XXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000362282/1-385 ---------- ---------- ---------- ---------- ---------- BACU018004/1-667 P-EPRAPATP SGPLPTSDQL THVDREGQAA MVDVGGKPDT ERVAVASAVV ENSBTAP00000013792/1-633 PTEPQAPAAS SGPLPDSDQL THVDTEGRMA MVDVGRKPDT ERVAVASAVV 551 600 bmy_08564T0/1-405 ---------- ---------- ---------- ---------G HCRFCTLASF ENSTTRP00000008645/1-632 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000362282/1-385 ---------- ---------- ---------- ---------- ---------- BACU018004/1-667 LLGPVAYKLV QENQLKKGDA LVVAQLAGVQ AAKLTSQLIP LCHHVALSHV ENSBTAP00000013792/1-633 LLGPVAFKLI QENQLKKGDA LAVAQLAGIQ AAKLTSQLIP LCHHVALSHV 601 650 bmy_08564T0/1-405 VV-------- ---------- ---------- ---------- ---------- ENSTTRP00000008645/1-632 XXXXXXXXXX XXXXXXXXXX XXGPTGVEME ALTSAAVAAL ALYDMCKAVS ENSP00000362282/1-385 ---------- ---------- ---------- ---------- ---------- BACU018004/1-667 QVQLELDSTR HAVVVRASCR ARGPTGVEME ALTSAAVAAL TLYDMCKAVS ENSBTAP00000013792/1-633 QVQLELDRTR HAAVIQASCR ARGPTGVEME ALTSAAVAAL ALYDMCKAVS 651 700 bmy_08564T0/1-405 ---------- ---------- ---- ENSTTRP00000008645/1-632 RDIVLAEIKL VSKTGGQRGD FHRT ENSP00000362282/1-385 ---------- ---------- ---- BACU018004/1-667 RDIVLAEIKL VSKTGGQRGD FHRT ENSBTAP00000013792/1-633 RDIVLAEIKL VSKTGGQRGD FHRT