KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:51:35 2014 Check: 00 .. Name: ENSP00000367817/1-558 Len: 604 Check: 8477 Weight: 1.00 Name: ENSBTAP00000013799/1-504 Len: 604 Check: 248 Weight: 1.00 Name: ENSTTRP00000013473/1-483 Len: 604 Check: 6165 Weight: 1.00 Name: bmy_12005T0/1-533 Len: 604 Check: 1893 Weight: 1.00 Name: BACU006783/1-478 Len: 604 Check: 8737 Weight: 1.00 // 1 50 ENSP00000367817/1-558 MRCALALSAL LLLLSTPPLL PSSPSPSPSP SQNATQTTTD SSNKTAPTPA ENSBTAP00000013799/1-504 ---------- ---------- ---------- ---------- -ST------- ENSTTRP00000013473/1-483 ---------- ---LPLSLSQ DEVKPSGPTL PK--KASQTP PSS------- bmy_12005T0/1-533 MRSALMLSAF LLLLPLSLSQ NEVKPIGETA AEESKPDTVP PSS------- BACU006783/1-478 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000367817/1-558 SSVTIMATDT AQQSTVPTSK ANEILASVKA TTLGVSSDSP GTTTLAQQVS ENSBTAP00000013799/1-504 ------VTST KQSVTSTTAS DQTLNS---- -TPGKQNAAP -TSTETSTVT ENSTTRP00000013473/1-483 ------VQDT VKQSTVPPSA DKTVTA---L ETKGSTAKTP -NTSRAVPAS bmy_12005T0/1-533 ------AQNT VKQSTVPPST DKSVTA---L ETKGSTPTTP -STSRAVPPS BACU006783/1-478 ---------- --------ST DKSVTA---L ETKGSTPTTP -NTSRAVPPS 101 150 ENSP00000367817/1-558 GPVNTTVARG GGSGNPTTTI ESPKSTKSAD TTTVATSTAT AKPNTTSSQN ENSBTAP00000013799/1-504 AAPASIVAST SAQKSPTAT- GSEATLVTTE DPTTTSTTVS TSPESTSSRN ENSTTRP00000013473/1-483 AQQSTTAAAV ARETSP--G- SPAITTKDSK -STTTPTTVS TKPETTSSQS bmy_12005T0/1-533 AQQSTTAAAS GKDEKPATG- NSAITTKDSK DSTTTPTTVS TKPETTSSQS BACU006783/1-478 AQQSTTAAAS GKDEKPATG- NSAITTKDSK DSTTTPTTVS TKPETTSSQS 151 200 ENSP00000367817/1-558 GAE-DTTNSG GKSSHSVTTD LTSTK----- AEHLTTPHPT SPLSPRQPTS ENSBTAP00000013799/1-504 AMN-DSPTSR IPTTHSVTTD SVTAKEGSQK ISTSPDPNIT PNISPILSSS ENSTTRP00000013473/1-483 GIKSSSAKSG TQSSHSVTTS SVITKEGNQA ASDLPNPGNT SVITPALPSV bmy_12005T0/1-533 GIKSNSAKSG TQSSHGVTTS SVITKEGNQA ASDLPNLGDT SVITPALPSL BACU006783/1-478 GIKSNSAKSG TQSSHSVTTS SVITKEGNQA ASDLPHLGTT SVITPALPSL 201 250 ENSP00000367817/1-558 THPVAT---- ---------- --PTSSGHDH LMKISSSSST VAIPGYTFTS ENSBTAP00000013799/1-504 TNLSSTQQPS PGPVTSAPGT SEPTGSFPQG SDKMTVTTSL GRMTSPTFTA ENSTTRP00000013473/1-483 PTPASP---- ---------- -------AHR PVKIT--SSL GTMAGPTFTT bmy_12005T0/1-533 PTPASTHQPS TVPVTSVPVT SEPAGSSSEG PNKITAATSL GTMAGPTFTT BACU006783/1-478 PTPASTHQPS TVPVTSVPVT SEPTGSSSEG PNKITAATSL GTMTGPTFTT 251 300 ENSP00000367817/1-558 PGMTTTLLET VFHHVSQAGL ELLTSGDLPT LASQSAGITA SSVISQRTQQ ENSBTAP00000013799/1-504 Q--VTTL--- ---------- ---------- ---------K TQVAVEGTQH ENSTTRP00000013473/1-483 QGTLTTL--- ---------- ---------- ---------T PWVTSQGTQH bmy_12005T0/1-533 QGTLTTL--- ---------- ---------- ---------T PWVTSQGTQH BACU006783/1-478 QGMLTTL--- ---------- ---------- ---------T PWVTSQGTQH 301 350 ENSP00000367817/1-558 TSSQMPASST APSSQETVQP TSPATALRTP TL-PETMSSS PTAASTTHRY ENSBTAP00000013799/1-504 TSSETPAVTV A---TGVQQP TGSSRGRGTT SLVRRSTISS TQLTSNAPQS ENSTTRP00000013473/1-483 TSSKTPAVTG T---SEAVQP TGSSSGLG-P HLLPGATSSN THLESTVPQG bmy_12005T0/1-533 TSSKTPAVTG T---SGALQP TGSSSGPGTT SPARGPTSSN THLESTAPQG BACU006783/1-478 TSSKTPAVTG T---SGALQP TGSSSGPGTT SPARGPTSSI THLESTAPQG 351 400 ENSP00000367817/1-558 PKTPSPTVAH ESNWAKCEDL ETQTQSEKQL VLNLTG---- -NTLCAG--- ENSBTAP00000013799/1-504 SSTPSPTSVI LTNIGKIQCH PPEKLNESKL SLNISDANSC CSMLSDGLPL ENSTTRP00000013473/1-483 ASIPSPTS-- ------IQCD SPEKLNEKML VLNVSKTDVS KTNICNA--- bmy_12005T0/1-533 SSIPSPTSVI SAGVGQIQCD SPEKLNEKML VLNISKTDVS KTNICNA--- BACU006783/1-478 SSIPSPTSVI PAGVGQIQCD SPEKLNEKML VLNISKTDVS KTNICNA--- 401 450 ENSP00000367817/1-558 ---------- -----GASDE KLISLICRAV KATFNPAQDK CGIRLASVPG ENSBTAP00000013799/1-504 TQGSRCQQLF FHSGWNFPNH KLVEVLCQAV KSSFNKTQDE CHIEMAPGSH ENSTTRP00000013473/1-483 ---------- -----TALND KLITLLCRAA KASFNPAQDQ CHIQLAPVPE bmy_12005T0/1-533 ---------- -----TASND KLVTLLCRAA KASFNPAQDQ CHIQLAPVPE BACU006783/1-478 ---------- -----TASND KLVTLLCRAA KASFNPAQDQ CHIRLAPVPE 451 500 ENSP00000367817/1-558 SQTVVVKEIT IHTKLPAKDV YERLKDKWDE LKEAGVSDMK LGDQGPPEEA ENSBTAP00000013799/1-504 AQEVDIKQIT IITKLQPTDI YKLLKNDWDK LEGVGVRDMQ FGGQGPPEEM ENSTTRP00000013473/1-483 IQAVAIKQIT ICTKLFPTDV YELLKDKWDD LKEVGVNDMQ FEGQGPPEET bmy_12005T0/1-533 IQAVAIKQIT ICTNLFPTDV YELLKDKWDD LKEVGVNDMQ FEGQGPPEET BACU006783/1-478 IQAVAIKQIT ICTNLFPTDV YELLKDKWDD LKEVGVNDMQ FEGQGPPEET 501 550 ENSP00000367817/1-558 EDRFSMPLII TIVCMASFLL LVAALYGCCH QRLSQRKDQQ RLTEELQTVE ENSBTAP00000013799/1-504 EDRFSMPLII TIVCMASFLL LVAALYGCCH QRLSHRKDQQ RLTEELQTVE ENSTTRP00000013473/1-483 EDRFSMPLII TIVCMASFLL LVAALYGCCH QRLSQRKDQQ RLTEELQTVE bmy_12005T0/1-533 EDRFSMPLII TIVCMASFLL LVAALYGCCH QRLSQRKDQQ RLTEELQTVE BACU006783/1-478 ADRLSMPLII TIVCMASFLL LVAALYGCCH QRLSQRKDQQ RLTEELQTVE 551 600 ENSP00000367817/1-558 NGYHDNPTLE VMETSSEMQE KKVVSLNGEL GDSWIVPLDN LTKDDLDEEE ENSBTAP00000013799/1-504 NGYHDNPTLE VMETSSEMQE KKVANLNGEL GDSWIVPLDN LTKDD-PEEE ENSTTRP00000013473/1-483 NGYHDNPTLE VMETSSEMQE KKVVSLNGEL GDSWIVPLDN LTKDDLEEEE bmy_12005T0/1-533 NGYHDNPTLE VMETSSEMQE KKVVNLNGEL GDSWIVPLDN LTKDDLDEEE BACU006783/1-478 NGYHDNPTLE VMETSSEMQE KKVVNLNGEL GDSWIVPLDN LTKDDLDEEE 601 650 ENSP00000367817/1-558 DTHL ENSBTAP00000013799/1-504 DTHL ENSTTRP00000013473/1-483 DTHL bmy_12005T0/1-533 DTHL BACU006783/1-478 DTHL