KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:51:35 2014 Check: 00 .. Name: ENSTTRP00000002311/1-1008 Len: 1023 Check: 6629 Weight: 1.00 Name: ENSP00000327889/1-1019 Len: 1023 Check: 2231 Weight: 1.00 Name: ENSBTAP00000013803/1-1018 Len: 1023 Check: 9364 Weight: 1.00 Name: bmy_19282T0/1-1002 Len: 1023 Check: 995 Weight: 1.00 Name: BACU005371/1-1019 Len: 1023 Check: 3313 Weight: 1.00 // 1 50 ENSTTRP00000002311/1-1008 MSALCDPPGA PGPPGPAPVS HGPAPLSAQE LSQ---EIKA FLTGVDPVLG ENSP00000327889/1-1019 MSALCDPPGA PGPPGPAPAT HGPAPLSAQE LSQ---EIKA FLTGVDPILG ENSBTAP00000013803/1-1018 MSALCDPPGA PGPPGPAPVT HGPAPLSAQE LSQ---EIKA FLTGVDPVLG bmy_19282T0/1-1002 ---------- ---------- MGAAPFWDAD SSRNQCEIKA FLTGVDPVLG BACU005371/1-1019 MSALCDPPGA PGPPGPAPVS HGPAPLSAQE LSQ---EIKA FLTGVDPVLG 51 100 ENSTTRP00000002311/1-1008 HQLSAREHAR CGLLLLRSLP PARAAVLDHL RGVFDESVRA HLAALDESPV ENSP00000327889/1-1019 HQLSAREHAR CGLLLLRSLP PARAAVLDHL RGVFDESVRA HLAALDETPV ENSBTAP00000013803/1-1018 HQLSAREHAR CGLLLLRSLP PARAAVLDHL RGVFDESVRA HLATLDESPV bmy_19282T0/1-1002 HQLSAREHAR CGLLLLRSLP PARAAVLDHL RGVFDESVRA HLAALDESPV BACU005371/1-1019 HQLSAREHAR CGLLLLRSLP PARAAVLDHL RGVFDESVRA HLAALDESPV 101 150 ENSTTRP00000002311/1-1008 AGPPHLRPPP PSHVPAGGPG LEDVVQEVQQ VLSEFIRANP KAWAPVISAW ENSP00000327889/1-1019 AGPPHLRPPP PSHVPAGGPG LEDVVQEVQQ VLSEFIRANP KAWAPVISAW ENSBTAP00000013803/1-1018 AGPPHLRPPP PSHVPAGGPG LEDVVQEVQQ VLSEFIRANP KAWAPVISAW bmy_19282T0/1-1002 AGPPHLRPPP PSHVPAGGPG LEDVVQEVQQ VLSEFIRANP KAWAPVISAW BACU005371/1-1019 AGPPHLRPPP PSHVPAGGPG LEDVVQEVQQ VLSEFIRANP KAWAPVISAW 151 200 ENSTTRP00000002311/1-1008 SIDLMGQLSS TYSGQHQRVP HATGSLNELL QLWMGCRATR TLMDIYVQCL ENSP00000327889/1-1019 SIDLMGQLSS TYSGQHQRVP HATGALNELL QLWMGCRATR TLMDIYVQCL ENSBTAP00000013803/1-1018 SIDLMGQLSS TYSGQHQRVP HATGSLNELL QLWMGCRATR TLMDIYVQCL bmy_19282T0/1-1002 SIDLMGQLSS TYSGQHQRVP HATGSLNELL QLWMGCRATR TLMDIYVQCL BACU005371/1-1019 SIDLMGQLSS TYSGQHQRVP HATGSLNELL QLWMGCRATR TLMDIYVQCL 201 250 ENSTTRP00000002311/1-1008 SALIGSCPDA CVDALLDTSV QHSPHFDWVV AHIGSSFPGT IISRVLSCGL ENSP00000327889/1-1019 SALIGSCPDA CVDALLDTSV QHSPHFDWVV AHIGSSFPGT IISRVLSCGL ENSBTAP00000013803/1-1018 SALIGSCPDA CVDALLDTSV QHSPHFDWVV AHIGSSFPGT IISRVLSCGL bmy_19282T0/1-1002 SALIGSCPDA CVDALLDTSV QHSPHFDWVV AHIGSSFPGT IISRVLSCGL BACU005371/1-1019 SALIGSCPDA CVDALLDTSV QHSPHFDWVV AHIGSSFPGT IISRVLSCGL 251 300 ENSTTRP00000002311/1-1008 KDFCVHSGAG GGAGGSGGGS SQTPSTDPFP GSPAIPGEKR VPKIASVVGI ENSP00000327889/1-1019 KDFCVHGGAG GGAGSSGGSS SQTPSTDPFP GSPAIPAEKR VPKIASVVGI ENSBTAP00000013803/1-1018 KDFCVHGGAG SGAGGSGGGS SQTPSADPFP GSPAIPGEKR VPKIASVVGI bmy_19282T0/1-1002 KDFCVHSGAG GGAGGSGGGS SQTPSTDPFP GSPAVPGEKR VPKIASVVGI BACU005371/1-1019 KDFCVHSGAG GGAGGSGGGS SQTPSTDPFP GSPAIPGEKR VPKIASVVGI 301 350 ENSTTRP00000002311/1-1008 LGHLASRHGD SIRRELLRMF HDSLAGGTGG RSGDPSLQAT VPFLLQLAVM ENSP00000327889/1-1019 LGHLASRHGD SIRRELLRMF HDSLAGGSGG RSGDPSLQAT VPFLLQLAVM ENSBTAP00000013803/1-1018 LGHLASRHGD SIRRELLRMF HDSLAGGTGG RSGDPSLQAT VPFLLQLAVM bmy_19282T0/1-1002 LGHLASRHGD SIRRELLRMF HDSLAGGAGG RSGDPSLQAT VPFLLQLAVM BACU005371/1-1019 LGHLASRHGD SIRRELLRMF HDSLAGGAGG RSGDPSLQAT VPFLLQLAVM 351 400 ENSTTRP00000002311/1-1008 SPALLGTVSG ELVDCLKPPA VLSQLQQHLQ GFPREELDNM LNLAVHLVSQ ENSP00000327889/1-1019 SPALLGTVSG ELVDCLKPPA VLSQLQQHLQ GFPREELDNM LNLAVHLVSQ ENSBTAP00000013803/1-1018 SPALLGTVSG ELVDCLKPPA VLSQLQQHLQ GFPREELDNM LNLAVHLVSQ bmy_19282T0/1-1002 SPALLGTVSG ELVDCLKPPA VLSQLQQHLQ GFPREELDNM LNLAVHLVSQ BACU005371/1-1019 SPALLGTVSG ELVDCLKPPA VLSQLQQHLQ GFPREELDNM LNLAVHLVSQ 401 450 ENSTTRP00000002311/1-1008 ASGAGAYRLL QFLVDTAMPA SVITTQGLAV PDTVREACDR LIQLLLLHLQ ENSP00000327889/1-1019 ASGAGAYRLL QFLVDTAMPA SVITTQGLAV PDTVREACDR LIQLLLLHLQ ENSBTAP00000013803/1-1018 ASGAGAYRLL QFLVDTAMPA SVITTQGLAV PDTVREACDR LIQLLLLHLQ bmy_19282T0/1-1002 ASGAGAYRLL QFLVDTAMPA SVITTQGLAV PDAVREACDR LIQLLLLHLQ BACU005371/1-1019 ASGAGAYRLL QFLVDTAMPA SVITTQGLAV PDTVREACDR LIQLLLLHLQ 451 500 ENSTTRP00000002311/1-1008 KLVHHRGGXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000327889/1-1019 KLVHHRGGSP GEGVLGPPPP PRLVPFLDAL KNHVGELCGE TLRLERKRFL ENSBTAP00000013803/1-1018 KLVHHWGPSL GEGLLSSPPP PRPVPFLDAL RNHVGELCGE TLRLERKRFL bmy_19282T0/1-1002 KLVHHRGGSP GEGVLGPPPP PRPVPFLDAL RNHVGELCGE TLRLERKRFL BACU005371/1-1019 KLVHHRGGSP GEGVLGPPPP PRPVPFLDAL RNHVGELCGE TLRLERKRFL 501 550 ENSTTRP00000002311/1-1008 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXRLVVSL ENSP00000327889/1-1019 WQHQLLGLLS VYTRPSCGPE ALGHLLSRAR SPEELSLATQ LYAG-LVVSL ENSBTAP00000013803/1-1018 WQHQLLGLLS VYTRPSCGPE ALGHLLSRAR SPEELSLATQ LYAG-LVVSL bmy_19282T0/1-1002 WQHQLLGLLS VYTRPSCGPE ALGHLLSRAR SPEELSLATQ LYAG-LVVSL BACU005371/1-1019 WQHQLLGLLS VYTRPSCGPE ALGHLLSQAR SPEELSLATQ LYAG-LVVSL 551 600 ENSTTRP00000002311/1-1008 SGLLPLAFRS CLARVHAGTL QPPFTARFLR NLALLVGWEQ QGGEGPAALG ENSP00000327889/1-1019 SGLLPLAFRS CLARVHAGTL QPPFTARFLR NLALLVGWEQ QGGEGPAALG ENSBTAP00000013803/1-1018 SGLLPLAFRS CLARVHAGTL QPPFTARFLR NLALLVGWEQ QGGEGPAALG bmy_19282T0/1-1002 SGLLPLAFRS CLARVHAGTL QPPFTARFLR NLALLVGWEQ QGGEGPAALG BACU005371/1-1019 SGLLPLAFRS CLARVHAGTL QPPFTARFLR NLALLVGWEQ QGGEGPAALG 601 650 ENSTTRP00000002311/1-1008 ARFGESASAH LSDLAPLLLH PEEEVAEASA SLLAICPFPP EALCPSQLLG ENSP00000327889/1-1019 AHFGESASAH LSDLAPLLLH PEEEVAEAAA SLLAICPFPS EALSPSQLLG ENSBTAP00000013803/1-1018 ARFGESASAH LSDLAPLLLH PEEEVAEAAA SLLAICPFPP EALSPSQLLG bmy_19282T0/1-1002 ARFGESASAH LSDLAPLLLH PEEEVAEASA SLLAICPFPP EALSPSQLLG BACU005371/1-1019 ARFGESASAH LSDLAPLLLH PEEEVAEASA SLLAICPFPP EALSPSQLLG 651 700 ENSTTRP00000002311/1-1008 LVRAGVHRFF ASLRLHGPPG VASASQLLTR LSQTSPAGLK AVLQLLVEGA ENSP00000327889/1-1019 LVRAGVHRFF ASLRLHGPPG VASACQLLTR LSQTSPAGLK AVLQLLVEGA ENSBTAP00000013803/1-1018 LVRAGVHRFF ASLRLHGPPG VASASQLLLR LSQTCPAGLK AVLQLLVEGA bmy_19282T0/1-1002 LVRAGVHRFF ASLRLYGPPG VASASQLLTR LSQTSPAGLK AVLQLLVEGA BACU005371/1-1019 LVRAGVHRFF ASLRLHGPPG VASASQLLTR LSQTSPAGLK AVLQLLVEGA 701 750 ENSTTRP00000002311/1-1008 LHRGNTELFG GEVDGDNETL SVVSAPLASA SLLDTNRRHT AAVPGPGGIW ENSP00000327889/1-1019 LHRGNTELFG GQVDGDNETL SVVSASLASA SLLDTNRRHT AAVPGPGGIW ENSBTAP00000013803/1-1018 LHRGNTELFG GEVDGDNETL SIVTAPLASA SLLDTNRRHT AAVPGPGGIW bmy_19282T0/1-1002 LHQGNTELFG GEVDGDNETL SVVSAPLASA SLLDINRRHT AAVPGPGGIW BACU005371/1-1019 LHQGNTELFG GEVDGDNETL SVVSAPLASA SLLDTNRRHT AAVPGPGGIW 751 800 ENSTTRP00000002311/1-1008 SVFHAGVIGR GLKPPKFAQS RNQQEVMYNT QSLLSLLVHC CSAPGGTECV ENSP00000327889/1-1019 SVFHAGVIGR GLKPPKFVQS RNQQEVIYNT QSLLSLLVHC CSAPGGTECG ENSBTAP00000013803/1-1018 SVFHAGVIGR GLKPPKFVQS RNQQEVIYNT QSLLSLLVHC CSAPGGTECV bmy_19282T0/1-1002 SVFHAGVIGR GLKPPKFAQA RNQQEVMYNT QSLLSLLVHC CSAPGGTECV BACU005371/1-1019 SVFHAGVIGR GLKPPKFAQS RNQQEVMYNT QSLLSLLVHC CSAPGGTECV 801 850 ENSTTRP00000002311/1-1008 GCWGAPTLSP EAAKAVAVTL VESVCPDAAG AELAWPPEEH ARATVERDLR ENSP00000327889/1-1019 ECWGAPILSP EAAKAVAVTL VESVCPDAAG AELAWPPEEH ARATVERDLR ENSBTAP00000013803/1-1018 ACWGASTLSP EAAKAVAVTL VESVCPDAAG AELAWPPEEH ARATVERDLR bmy_19282T0/1-1002 GCWGAPTLSP EAAKAVAVTL VESVCPDAAG AELAWPPEEH ARATVERDLR BACU005371/1-1019 GCWGAPTLSP EAAKAVAVTL VESVCPDAAG AELAWPPEEH ARATVERDLR 851 900 ENSTTRP00000002311/1-1008 IGRRFREQPL LFELLKLVAA APPALCYCSV LLRGLLAALL GHWEASRHPD ENSP00000327889/1-1019 IGRRFREQPL LFELLKLVAA APPALCYCSV LLRGLLAALL GHWEASRHPD ENSBTAP00000013803/1-1018 IGRRFREQPL LFELLKLVAA APPALCYCSV LLRGLLAALL GHWEASRHPD bmy_19282T0/1-1002 IGRRFREQPL LFELLKLVAA APPALCYCSV LLRGLLAALL GHWEASRHPD BACU005371/1-1019 IGRRFREQPL LFELLKLVAA APPALCYCSV LLRGLLAALL GHWEASRHPD 901 950 ENSTTRP00000002311/1-1008 TAHSPWH-EA SCTLVAVMAE -SLLPPALGN MHEVFSQLAP FE-------- ENSP00000327889/1-1019 TTHSPWHLEA SCTLVAVMAE GSLLPPALGN MHEVFSQLAP FEVRLLLLSV ENSBTAP00000013803/1-1018 TTHSPWHLEA SCTLVAVMAE GSLLPPALGN MHEVFSQLAP FEVRLLLLSV bmy_19282T0/1-1002 TAHSPWHLEA SCTLVAVMAE GSLLPPALGN MHEVFSQLAP FEVRLLLLSV BACU005371/1-1019 TAHSPWHLEA SCTLVAVMAE GSLLPPALGN MHEVFSQLAP FEVRLLLLSV 951 1000 ENSTTRP00000002311/1-1008 -GFLREHGPL PQKFIFQS-R GRFIRDFSRE GGGEGGAHLA VLHSVLHRNI ENSP00000327889/1-1019 WGFLREHGPL PQKFIFQSER GRFIRDFSRE GGGEGGPHLA VLHSVLHRNI ENSBTAP00000013803/1-1018 WGFLREHGPL PQKFIFQSER GRFIRDFSRE GGGEGGPHLA VLHSVLHRNI bmy_19282T0/1-1002 WGFLREHGPL PQKFIFQSER GRFIRDFSRE GGGEGGAHLA VLHSVLHRNI BACU005371/1-1019 WGFLREHGPL PQKFIFQSER GRFIRDFSRE GGGEGGAHLA VLHSVLHRNI 1001 1050 ENSTTRP00000002311/1-1008 DRLGLFSGRF QAPSPSNLLR QGT ENSP00000327889/1-1019 DRLGLFSGRF QAPSPSTLLR QGT ENSBTAP00000013803/1-1018 DRLGLFSGRF QAPLPST-LR QGT bmy_19282T0/1-1002 DRLGLFSGRF QAPSPSNLLR QGT BACU005371/1-1019 DRLGLFSGRF QAPSPSNLLR QGT