KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 16:51:39 2014 Check: 00 .. Name: ENSTTRP00000003807/1-382 Len: 423 Check: 9947 Weight: 1.00 Name: bmy_16075T0/1-423 Len: 423 Check: 9071 Weight: 1.00 Name: ENSP00000218721/1-412 Len: 423 Check: 7479 Weight: 1.00 Name: ENSBTAP00000013838/1-404 Len: 423 Check: 6528 Weight: 1.00 // 1 50 ENSTTRP00000003807/1-382 MGSAENRSDG SEDAGEPPWA EVLPCDKRRC SPFPLGALEP MTAMCLGLFA bmy_16075T0/1-423 MGSAENRSDG SEGAGEPPWA ELLPCDERRC SPFPLGALVP VTAVCLGLFA ENSP00000218721/1-412 MGSPWNGSDG PEGAREPPWP ALPPCDERRC SPFPLGALVP VTAVCLCLFV ENSBTAP00000013838/1-404 MSSPGNRSHA SRGSGEPPWA ALLPCDERRC SPFPLGALVP VTAVCLGLFA 51 100 ENSTTRP00000003807/1-382 VGVNGNVMTV LLIGRYRDMR TTTSLYLGSM AVSDLLILLG LPFDLYRLWR bmy_16075T0/1-423 VGVRGNAMTV LLIGRYRDMR TTTNLYLGSM DVSDLLILLG LPFDLYRLWR ENSP00000218721/1-412 VGVSGNVVTV MLIGRYRDMR TTTNLYLGSM AVSDLLILLG LPFDLYRLWR ENSBTAP00000013838/1-404 VGVSGNVVTV LLIGRYRDMR TTTNLYLGSM AVSDLLILLG LPFDLYRLWR 101 150 ENSTTRP00000003807/1-382 SRPWVIGTLL SRLSLY---- CTYATLLHMT ALSLERYLAI CHKLQAHVLV bmy_16075T0/1-423 SRPWVFGTLL CRLSLYVGKG CTYATLLHMT ALSLERYLAI CRPLRARVLV ENSP00000218721/1-412 SRPWVFGPLL CRLSLYVGEG CTYATLLHMT ALSVERYLAI CRPLRARVLV ENSBTAP00000013838/1-404 SRPWVFGQLL CRLSLYVGEG CTYATLLHMT ALAVERYLAV CRPLRARVLV 151 200 ENSTTRP00000003807/1-382 TRRRVLMVIA ALWAVALLFA RPF-FILGV- QDPGRYEVQD LNGNAYLNPS bmy_16075T0/1-423 ARRRVRALIA ALWAVALLSA GPFFFLVGVE QDPGRYAVQD LNGNAQLAPS ENSP00000218721/1-412 TRRRVRALIA VLWAVALLSA GPFLFLVGVE QDPGISVVPG LNGTARIASS ENSBTAP00000013838/1-404 TRRRVRALIA ALWAVALLSA GPFFFLVGVE QDAGHDALRD LNCTAQ---- 201 250 ENSTTRP00000003807/1-382 TRATPL---L RSSQEPPLSQ PSGPEAAAAA ALFN-QCRPS PAQRGALCVM bmy_16075T0/1-423 PRTSPPPPLL GSSRAPPLSP PSGPEAAAAA ALFSRECRPS PAQRGALRVM ENSP00000218721/1-412 PLASSPP--L WLSRAPPPSP PSGPETAEAA ALFSRECRPS PAQLGALRVM ENSBTAP00000013838/1-404 PSALPPPF-L GSSLASPRSP PSGPE-ADAA ALFSRECRPS PAQLGALRVM 251 300 ENSTTRP00000003807/1-382 L-VTTAYLFL N-LCLSVLYR L-GRELWRNR GPYXXXXXXX XXXXXXXXXX bmy_16075T0/1-423 QWVTTAYFFL PFLCLSVLYG LIGRELWRSH GPLRGPATSA REKGHQQTVR ENSP00000218721/1-412 LWVTTAYFFL PFLCLSILYG LIGRELWSSR RPLRGPAASG RERGHRQTVR ENSBTAP00000013838/1-404 LWVTTAYFFL PFLCLSVLYG LIGRELWRSR GQLRGPATSG RERGHRQTVR 301 350 ENSTTRP00000003807/1-382 XXXXYQL--- ----PTYIGK I--ISTEDFH IS------DI VILQHN---- bmy_16075T0/1-423 VLLVVVLAFI VCWLPFHVGR IIYINTKDSQ MMYFSQYFNI VALQLFYLSA ENSP00000218721/1-412 VLLVVVLAFI ICWLPFHVGR IIYINTEDSR MMYFSQYFNI VALQLFYLSA ENSBTAP00000013838/1-404 VLLVVVLAFI VCWLPFHVGR IIYINTKDSQ MMYFSQYFNI VALQLFYLSA 351 400 ENSTTRP00000003807/1-382 --SLNSVFNN V------ISK KCTIAACKLL FMRVSREK-G LSRITKTERG bmy_16075T0/1-423 PHPLQPHFKE PGGPDREVSA EAGRLKATLE ETRLAALRPA LTLTSDSAHR ENSP00000218721/1-412 --SINPILYN L------ISK KYRAAAFKLL LARKSRPR-G FHRSRDTAGE ENSBTAP00000013838/1-404 --SINPILYN L------ISK KYRAAAWKLL LARRSRQR-G FCRSREAEGN 401 450 ENSTTRP00000003807/1-382 DGRDTRKDTV GYTERAANMK MVV bmy_16075T0/1-423 PIKALTSDGP AEFQPAVFKV VVS ENSP00000218721/1-412 VAGDTGGDTV GYTETSANVK TMG ENSBTAP00000013838/1-404 PA----GDRA GCTENSANVQ TSA