KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:51:41 2014 Check: 00 .. Name: ENSP00000205143/1-618 Len: 631 Check: 6093 Weight: 1.00 Name: ENSBTAP00000013852/1-603 Len: 631 Check: 5263 Weight: 1.00 Name: ENSTTRP00000003353/1-611 Len: 631 Check: 2514 Weight: 1.00 Name: BACU008307/1-470 Len: 631 Check: 5221 Weight: 1.00 Name: bmy_16354T0/1-547 Len: 631 Check: 5865 Weight: 1.00 // 1 50 ENSP00000205143/1-618 MVSPRMSGLL SQTVILALIF LPQTRPAGVF ELQIHSFGPG PGPGAPRSPC ENSBTAP00000013852/1-603 MVAPQMPQLL SSTVILALFF LPQAQPAGVF ELQIHSFGPG PGPGTPRSPC ENSTTRP00000003353/1-611 MVSPQMPQLL SPTVILALFF LPQTRPAGVF ELQIHSFGPG PGPGAPRSPC BACU008307/1-470 MVSPQMPQFL SPTVILALFF LPQTRPAGVF ELQIHSFGPG PGPGAPRSPC bmy_16354T0/1-547 MVSPQMPQLL SPTVILALFF LPQTRPAGVF ELQIHSFGPG PGPGAPRSPC 51 100 ENSP00000205143/1-618 SARLPCRLFF RVCLKPGLSE EAAESPCALG AALSARGPVY TEQPGAPAPD ENSBTAP00000013852/1-603 KAGGSCRLFF RVCLKPGLSE ETAEAPCTLG AALSARGPVY TAQPGALAPE ENSTTRP00000003353/1-611 KAGDTCRLFF RVCLKPGISE EAAESPCTLG AALSARGPVY TAQPGAPAPD BACU008307/1-470 KAGDTCRLFF RVCLKPGISE EAAESPCTLG AALSARGPVY TAQPGAPAPD bmy_16354T0/1-547 KAGDTCRLFF RVCLKPGISE EAAESPCTLG AALSARGPVY TAQPGAPAPD 101 150 ENSP00000205143/1-618 LPLPDGLLQV PFRDAWP-GT FSFIIETWRE ELGDQIGGPA WSLLARVAGR ENSBTAP00000013852/1-603 LRLPDGLLRV PFRDAWP-GT FSLIIETWRE ELGGQIGGAA WSLLARVAGR ENSTTRP00000003353/1-611 LPLPDGLMRV PFRDAWP-GT FSLVIETWRE ELGEQIGXXX XXXXXXXXXX BACU008307/1-470 LPLPDGLMRV PFRDAWP-GT FSLIIETWRE ELGEQIGA-- ---------- bmy_16354T0/1-547 LPLPDGLMRV PFRDAWPQGT FSLIIETWRE ELGEQIGGPA WSLLARVAGR 151 200 ENSP00000205143/1-618 RRLAAGGPWA RDIQRAGAWE LRFSYRARCE PPAVGTACTR LCRPRSAPSR ENSBTAP00000013852/1-603 RLLAAGGPWT RDVQRAGAWE LRFSYRARCE PPAVGAACAR LCRSRGAPLR ENSTTRP00000003353/1-611 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX BACU008307/1-470 ---------- ---------- ---------- ---------- ---------- bmy_16354T0/1-547 RRLAAGGPWA RDVQRAGAWE LRFSYRVRCE PPAVGAACAR LCRSRGAPSR 201 250 ENSP00000205143/1-618 CGPGLRPCAP LEDECEAPLV CRAGCSPEHG FCEQPGECRC LEGWTGPLCT ENSBTAP00000013852/1-603 CDPELRPCAP VEEECEAPPV CRAGCSPEHG FCEQPDECRC LEGWTGPLCT ENSTTRP00000003353/1-611 XXXXXXXXXX XXXXXXXXXA CRAGCSPEHG FCEQPDECRC LEGWTGPLCT BACU008307/1-470 ---------- ---------A CRAGCSPEHG FCEQPDECRC LEGWTGPLCT bmy_16354T0/1-547 CGPELRPCPQ IEDKCEAPPA CRAGCSPEHG FCEQPDECRC LEGWTGPLCT 251 300 ENSP00000205143/1-618 VPVSTSSCLS PRGPSSATTG CLVPGPGPCD GNPCANGGSC SETPRSFECT ENSBTAP00000013852/1-603 IPVSSSSCLS SRGPSSATTG CLVPGPGPCD GNPCANGGSC SETLGSFECT ENSTTRP00000003353/1-611 IPVSTSSCLS PRGPSSATTG CLVPGPGPCD GNPCANGGSC SETPGSFECT BACU008307/1-470 IPVSTSSCLS PRGPSSATTG CLVPGPGPCD GNPCANGGSC SETPGSFECT bmy_16354T0/1-547 IPVSTSSCLS PRGPSSATTG CLVPGPGPCD GNPCANGGSC S--------- 301 350 ENSP00000205143/1-618 CPRGFYGLRC EVSGVTCADG PCFNGGLCVG GADPDSAYIC HCPPGFQGSN ENSBTAP00000013852/1-603 CPRGFYGLRC EVSGVTCADG PCFNGGLCVG GADPDSAYIC HCPPGFQGSN ENSTTRP00000003353/1-611 CPRGFYGLRC EVSGVTCADG PCFNGGLCVG GADPDSAYIC RCPPGFQGSN BACU008307/1-470 CPRGFYGLRC EVSGVTCADG PCFNGGLCVG GADPDSAYIC RCPP------ bmy_16354T0/1-547 ---------- -VSGVTCADG PCFNGGLCVG GADPDSAYIC RCPP------ 351 400 ENSP00000205143/1-618 CEKRVDRCSL QPCRNGGLCL DLGHALRCRC RAGFAGPRCE HDLDDCAGRA ENSBTAP00000013852/1-603 CEKRVDRCSL QPCRNGGLCL DLGHALRCRC RAGFAGPRCE HDLEDCTGHT ENSTTRP00000003353/1-611 CEKRVDRCSL QPCRNGGLCL DLGHALRCRC RAGFAGPRCE HDLDDCANRA BACU008307/1-470 ---------- ---------- ---------- ---------- ---------- bmy_16354T0/1-547 ---------- -----GGLCL DLGHALRCRC RAGFAGPRCE HDLDDCASRA 401 450 ENSP00000205143/1-618 CANGGTCVEG GGAHRCSCAL GFGGRDCRER ADPCAARPCA HGGRCYAHFS ENSBTAP00000013852/1-603 CANGGTCLEG GGARRCSCAL GFGGRDCRER ADPCAARPCA HGGRCYAHFS ENSTTRP00000003353/1-611 CANGGTCLEG GGARRCSCAL GFGGRDCRER ADPCAARPCA HGGRCYAHFS BACU008307/1-470 ---------- ---------- GFQGSNCEKR VDRCSLQPCR NG---YAHFS bmy_16354T0/1-547 CANGGTCLEG GGARRCSCAL GFGGRDCRER ADPCAARPCA HGGRCYAHFS 451 500 ENSP00000205143/1-618 GLVCACAPGY MGARCEFPVH PDGASALPAA PPGLRPGDPQ RYLLPPALGL ENSBTAP00000013852/1-603 GLVCACAPGY MGARCEFPVH PDGAGALPAA QPGLREGDPQ RFLLPPALGL ENSTTRP00000003353/1-611 GLVCACAPGY MGARCEFPVH PDGAGALPVA PPGLRSGDPQ RFLLPPALGL BACU008307/1-470 GLVCACAPGY MGARCEFPVH PDGAGALPVA PPGLRPGDPQ RFLLPPALGL bmy_16354T0/1-547 GLVCACAPGY MGARCEFPVH PDGAGALPVA PSGLRPGDPQ RFLLPPALGL 501 550 ENSP00000205143/1-618 LVAAGVAGAA LLLVHVRRRG HSQDAGSRLL AGTPEPSVHA LPDALNNLRT ENSBTAP00000013852/1-603 LVAAGLAGAA LLLVHVRRRG PSRDTGPRLL AGTPEPSVHA LPDALNNMRT ENSTTRP00000003353/1-611 LVAAGLAGSA LLLVHVRRRG PGRDTGSRLL AGTPEPSVHA LPDALNNMRT BACU008307/1-470 LVAAGLAGSA LLLVHVRRRG PGRDTGSRLL AGTPEPSVHA LPDALNNMRT bmy_16354T0/1-547 LVAAGLAGSA LLLVHVRRRG PGRDTGSRLL AGTPEPSVHA LPDALNNMRT 551 600 ENSP00000205143/1-618 QEGSGDGPSS SVDWNRPEDV DPQGIYVISA PSIYARE--- ----VATPLF ENSBTAP00000013852/1-603 QEGPGDGPSP SSDWNHPEDG DARSIYVISA PSVYARE--- ----M----- ENSTTRP00000003353/1-611 REGAGDGPSP SSDWNRPEDG DARSVYVISA PCIYARE--- ----VVTHLS BACU008307/1-470 REGAGNGPSP SSDWNRPEDG DARSVYVISA PCIYAREWGV GWDSAQALLE bmy_16354T0/1-547 REGAGNGPSP SSDWNRPEDG DARSVYVISA PCIYARE--- ----A----- 601 650 ENSP00000205143/1-618 PPLHTGRAGQ RQHLLFPYPS SILSVK---- - ENSBTAP00000013852/1-603 ------TFGP QEVGSFELEL RH-------- - ENSTTRP00000003353/1-611 PA----HVGQ RQLLLFLLSL SVK------- - BACU008307/1-470 MSKIIGTEDE RTEKSNKWNI ATNEQMKESF Y bmy_16354T0/1-547 ---------- ---------- ---------- -