KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:51:44 2014 Check: 00 .. Name: ENSP00000400359/1-1225 Len: 1356 Check: 9571 Weight: 1.00 Name: ENSBTAP00000013879/1-1284 Len: 1356 Check: 9068 Weight: 1.00 Name: ENSTTRP00000008397/1-1220 Len: 1356 Check: 5628 Weight: 1.00 Name: bmy_16101T0/1-1338 Len: 1356 Check: 2771 Weight: 1.00 Name: BACU012086/1-773 Len: 1356 Check: 7626 Weight: 1.00 // 1 50 ENSP00000400359/1-1225 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000013879/1-1284 MGAGSRTGGG ARGGAPPIMD EPLGSRLRTT GFAPSRVFLD SWTTMPTLRS ENSTTRP00000008397/1-1220 ---------- ---------- ---------- ---------- ---------- bmy_16101T0/1-1338 AGRSRVKAGG QRAGAH--VT RRHAEELVAA RGCRSAVTGT CWTTMPTLRS BACU012086/1-773 ---------- ---------- ---------- ---------- ----MPTLRS 51 100 ENSP00000400359/1-1225 ---------- ---MSSPLQR AVGDTKRALS ASSSSSASL- -PFDDRDSNH ENSBTAP00000013879/1-1284 SSSRYHSSSS PSSTSSPLRR AVAGGRRSVS AASSSSVSVA MPCDDGDSKQ ENSTTRP00000008397/1-1220 ---------- --SGSSPLRR AVGTGPRSMS ASSSSSVAV- -PCDDRDSDQ bmy_16101T0/1-1338 SSSQLHSSSS PSSVSSPLRR ALGTGPRSLS ASSSSSVAV- -PCDDRDSDQ BACU012086/1-773 SSSQLHSSSS PSSVSSPLCR ALGTGPRSLS ASSSSSVAV- -PCDDRDSDQ 101 150 ENSP00000400359/1-1225 TSEGNGDSLL ADEDTDFEDS LNRNVKKRAA KRPPKTTPVA KHPKKGSRVV ENSBTAP00000013879/1-1284 TSEGDSESLS AGEGSDFEDS LRRNGKKRAA KRPLKPTP-A KLPKKRSQTV ENSTTRP00000008397/1-1220 TSEGDSESLS AGEGSDFEDN LRRNVKKRAA KRPLKTTPVA KRPKKGSQMV bmy_16101T0/1-1338 TSEGDSESLS AGEGSDFEDN LRRNVKKRAA KRPLRTTPVA KRPKKGSRMV BACU012086/1-773 TSEGDSESLS AGEGSDFEDN LRRNVRKRAA KRPLKTTPVA KRPKKGSRMV 151 200 ENSP00000400359/1-1225 HRHSRKQSEP PANDLFNAVK AAKSDMQSLV DEWLDSYKQD QDAGFLELVN ENSBTAP00000013879/1-1284 RANGQKESEP PASDLFDAVK GAKSDMQSLV DEWLDSYKQD QDAAFLELVN ENSTTRP00000008397/1-1220 RAHGQKESEP PASDLFEAVK AAKSDMQSLV DEWLDSYKQD QDAGFLELIN bmy_16101T0/1-1338 RAHGQKESEP PASDLFDAVK AAKSDM---- ---------- QDAGFLELIN BACU012086/1-773 RAHGQKESEP PASDLFDAVK AAKSDMQSLV DEWLDSYKQD QDAGFLELIN 201 250 ENSP00000400359/1-1225 FFIQSCGCKG IVTPEMFKKM SNSEIIQHLT EQFNEDSGDY PLIAPGPSWK ENSBTAP00000013879/1-1284 FFIRSCGCKG TVTPEMFKKM SNSEIIRHLT EQFNEDSGDY PLTASGPSWK ENSTTRP00000008397/1-1220 FFIRSCGCKG TVTPEMFKKM SNSEIIQQLT EQFNEDSGDY PLIAPGPSWK bmy_16101T0/1-1338 FFIRSCGCKG TVTAEMFKKM SNSEIIQHLT EQFNEDSGDY PLTAPGPSWK BACU012086/1-773 FFIRSCGCKG TVTAEMFKKM SNSEIIQHLT EQFNEDSGDY PLTAPGPSWK 251 300 ENSP00000400359/1-1225 KFQGSFCEFV RTLVCQCQYS LLYDGFPMDD LISLLTGLSD SQVRAFRHTS ENSBTAP00000013879/1-1284 KFQGSFCEFV RTLVYQCQYG LLYDGFPMDN LISLLTGLSD SQVRAFRHTS ENSTTRP00000008397/1-1220 KFQGSFCEFV RTLVYRCQYS LLYDGFPMDN LISLLTGLSD SQVRAFRHTS bmy_16101T0/1-1338 KFQGSFCEFV RTLVYRCQYS LLYDGFPMDN LISLLTGLSD SQVRAFRHTS BACU012086/1-773 KFQGSFCEFV RTLVYQCQYS LLYDGFPMDN LISLLTGLSD SQVRAFRHTS 301 350 ENSP00000400359/1-1225 TLAAMKLMTS LVKVALQLSV HQDNNQRQYE AERNKGPGQR APERLESLLE ENSBTAP00000013879/1-1284 TLAAMKLMTS LVRVALQLSL HKDNNQRQYE AERNKGPGQR APERLESLLE ENSTTRP00000008397/1-1220 TLAAMKLMTS LVRVAFQLSL HKDNNQRQYE TERNKGPGQR APERLESLLE bmy_16101T0/1-1338 TLAAMKLMTS LVRVALQLSL HKDNNQRQYE AERNKGPGQR SPERLESLLE BACU012086/1-773 TLAAMKLMTS LVRVALQLSL HKDNNQRQYE AERNKGPGQR SPERLESLLE 351 400 ENSP00000400359/1-1225 KRKELQEHQE EIEGMMNALF RGVFVHRYRD VLPEIRAICI EEIGCWMQSY ENSBTAP00000013879/1-1284 KRRELQEHQE EIEGMMNALF RGVFVHRYRD VLPEIRAICI EEIGSWMQSY ENSTTRP00000008397/1-1220 KRKELREHQE EIEGMMNALF RGVFVHRYRD VLPEIRAICI EEIGSWIQSY bmy_16101T0/1-1338 KRKELQEHQE EIEGMMNALF RGVFVHRYRD VLPEIRAICI EEIGSWMQSY BACU012086/1-773 KRKELQEHQE EIEGMMNALF RGVFVHRYRD VLPEIRAICI EELGSWMQSY 401 450 ENSP00000400359/1-1225 STSFLTDSYL KYIGWTLHDK HREVRLKCVK ALKGLYGNRD LTTRLELFTS ENSBTAP00000013879/1-1284 STSFLTDSYL KYIGWTLHDK HRDVRLKCLK ALKGLYGNQD LTSRLELFTS ENSTTRP00000008397/1-1220 STSFLTDSYL KYIGWTLHDK HREVRLKCLK ALKGLYGNRD WTARLELFTS bmy_16101T0/1-1338 STSFLTDSYL KYIGWTLHDK HREVRLKCLK ALKGLYGNQD WTARLELFTS BACU012086/1-773 STSFLTDSYL KYIGWTLHDK HREVRLKCLK ALKGLYGNRD WTARLELFTS 451 500 ENSP00000400359/1-1225 RFKDRMVSMV MDREYDVAVE AVRLLILILK NMEGVLTDAD CESVYPVVYA ENSBTAP00000013879/1-1284 RFKDRMVSMV MDREYDVAVE AVRLLIVILK SMDGVLTDAD CESIYPVVYA ENSTTRP00000008397/1-1220 RFKDRLVSMV MDREYDVAVE AVRLLTLILK NMEGMLTEAD CESIYPVVYA bmy_16101T0/1-1338 RFKDRLVSMV MDREYDVAVE AVRLLTLILK NMEGVLTEAD CESIYPVVYA BACU012086/1-773 RFKDRLVSMV MDREYDVAVE AVRLLTLILK NMEGVLTEAD CESIYPVVYA 501 550 ENSP00000400359/1-1225 SHRGLASAAG EFLYWKLFYP ECEIRMMGGR EQRQSPGAQR TFFQLLLSFF ENSBTAP00000013879/1-1284 SNRALASAAG EFLYWKLFYP ECETRAVGGR ERRRSPRPQR TFFYLLLSFF ENSTTRP00000008397/1-1220 SNRALASAVG EFLYWKLFCP ECETRTVGER ERRRSPRSQR TFFHLLLSFF bmy_16101T0/1-1338 SNRALASAVG EFLYWKLFYP ECETRTVGER ERRQSPRSQR TFFHLLLSFF BACU012086/1-773 SNRALASAVG EFLYWKLFYP ECETRTVGER ERRRSPCSQR TFFHLLLSFF 551 600 ENSP00000400359/1-1225 VESELHDHAA YLVDSLWDCA GARLKDWEGL TSLLLEKDQN LGDVQESTLI ENSBTAP00000013879/1-1284 VESELHDHAA YLVDSLWDCA GPLLKDWESL TSLLLEKDQN LGDVQESTLI ENSTTRP00000008397/1-1220 VESELHYHAA YLVDSLWDCA GPQLKDWESL TSLLLEKDQN LGDVQESTLT bmy_16101T0/1-1338 VESELHYHAA YLVDSLWDCA GPQLKDWESL TSLLLEKDQN LGDVQESTLI BACU012086/1-773 VESELHYHAA YLVDSLWDCA GPQLKDWESL TSLLLEKDQN LGDVQESTLI 601 650 ENSP00000400359/1-1225 EILVSSARQA SEGHPPVGRV TGRKGLTSKE RKTQADDRVK LTEHLIPLLP ENSBTAP00000013879/1-1284 EILVSSVRQA SEGHPPVGRV TGKKGLTPKE RKIQADDKVK LTEHLIPLLP ENSTTRP00000008397/1-1220 EILVSSVRQA SEGHPPVGRV TGRKGLTPKE RKIQADDKVK LTEHLIPLLP bmy_16101T0/1-1338 EILVSSVRQA SEGHPPVGRV TGRKGLTPKE RKIQADDKVK LTEHLIPLLP BACU012086/1-773 EILVSSVRQA SEGHPPVGRV TGRKGLTPKE RKIQADDKVK LTEHLIPLLP 651 700 ENSP00000400359/1-1225 QLLAKFSADA EKVTPLLQLL SCFDLHIYCT GRLEKHLELF LQQLQEVVVK ENSBTAP00000013879/1-1284 QLLAKFSADA EKVAPLLRLL NYFDLNIYCT RRLEKHLELL LQQLQEVVVK ENSTTRP00000008397/1-1220 QLLAKFSADA EKVAPLLQLL NYFDLNIYCT RRLEKHLELL LQQLQEVVVK bmy_16101T0/1-1338 QLLAKFSADA EKVAPLLQLL NYFDLNIYCT RRLEKHLELL LQQLQEVVVK BACU012086/1-773 QLLAKFSADA EKVAPLLQLL NYFDLNIYCT RRLEKHLELL LQQLQEVVVK 701 750 ENSP00000400359/1-1225 HAEPAVLEAG AHALYLLCNP EFTFFSRADF ARSQLVDLLT DRFQQELEEL ENSBTAP00000013879/1-1284 HAEPAVLEAG AHALYLLCNP EFTFFTRVDF ARSQLVDLLT DRFQQELEEL ENSTTRP00000008397/1-1220 HAEPAVLEAG AHALYLLCNP EFTFFSRVDF ARSQLVDLLT DRFQQELEEL bmy_16101T0/1-1338 HAEPAVLEAG AHALYLLCNP EFTFFSRVDF ARSQLVDLLT DRFQQELEEQ BACU012086/1-773 HAEPAVLEAG AHALYLLCNP EFTFFSRVDF ARSQLVDLLT DRFQQELEEQ 751 800 ENSP00000400359/1-1225 LQSSFLDEDE VYNLAATLKR LSAFYNTHDL TRWELYEPCC QLLQKAVDTG ENSBTAP00000013879/1-1284 LQSSFLDEDE VYSLAATLKR LSAFYNAHDL TRWELYEPCY QLLRKAVDTG ENSTTRP00000008397/1-1220 LQSSFLDEDE VYSLAATLKR LSAFYNAHDL TRWELYEPCY RLLRKAVDTG bmy_16101T0/1-1338 LQSSFLDEDE VYSLAATLKR LSAFYNAHDL TRWELYEPCY RLLRKAVDTG BACU012086/1-773 LQSSFLDEDE VYSLAATLKR LSAFYNAHDL TRWELYEPCY RLLRKAVDTG 801 850 ENSP00000400359/1-1225 EVPHQ----- --VILPALTL VYFSILWTLT HISKSDASQ- ---------- ENSBTAP00000013879/1-1284 EVPHQ----- --VTLPALTL VYFSILWTLT HISGSDASQ- ---------- ENSTTRP00000008397/1-1220 EVPHQ----- --VILPALTL VYFSILWTLT HVSGSDASQ- ---------- bmy_16101T0/1-1338 EVPHQASRQV GDVILPALTL VYFSILWTLT HVSGSDASQV NMGLSRGNGN BACU012086/1-773 EVPHQ----- ---------- ---------- ------ASR- ---------- 851 900 ENSP00000400359/1-1225 ---------- --------KQ LSSLRDRMVA FCELCQSCLS DVDTEIQEQA ENSBTAP00000013879/1-1284 ---------- --------KQ LLDLKGRMVA FCELCQSCLS DVDSEIQEQA ENSTTRP00000008397/1-1220 ---------- --------KQ LL-LKGRMVA FCELCQNCLS DVDPEIQEQA bmy_16101T0/1-1338 EGARVFLHFS PLKPLSPQKQ LLSLKGRMVT FCELCQNCLS DVDPEIQEQA BACU012086/1-773 ---------- ---------- ---------- -------QVG DVEA------ 901 950 ENSP00000400359/1-1225 FVLLSDLLLI FSPQMIVGGR DFLRPLVFFP EATLQSELAS FLMDHVFIQP ENSBTAP00000013879/1-1284 FVLLSDLLLI FSPQMIIGGR EFLRPLVFIP EATLQSELAS FLMDHVFIQP ENSTTRP00000008397/1-1220 FVLLSDLLLI FGPQMIVGGR EFLRPLVFIP EATLQSELAS FLMDHVFIQP bmy_16101T0/1-1338 FVLLSDLLLI FSPQMIVGGR EFLKPLVFIP EATLQSELAS FLMDHVFIQP BACU012086/1-773 ---------- --------GE EF-------- ---------- ---------- 951 1000 ENSP00000400359/1-1225 GDLGSGDSQE DHLQIERLHQ RRRLLAGFCK LLLYGVLEMD AASDVFKHYN ENSBTAP00000013879/1-1284 GELSGGHSQE DHLQIEQLHQ RRRLLAGFCK LLLYGVLEMD AASDVFKHYS ENSTTRP00000008397/1-1220 GGLGSGHSQE DHLQIEQLHQ RRRLLAGFCK LLLYGVLEMD AASDVFKHYN bmy_16101T0/1-1338 GELGSGHSQE DHSQIEQLHQ RRRLLAGFCK LLLYGVLEMD AASDVFKHYN BACU012086/1-773 ---------- ---------- ---------- ---------- ---------- 1001 1050 ENSP00000400359/1-1225 KFYNDYGDII KETLTRARQI DRSHCSRILL LSLKQLYTEL LQEHGPQGLN ENSBTAP00000013879/1-1284 KFYNDYGDII KETLTRARQI DRSHCSRILL LSLKQLYTEL LQEQGPQGLN ENSTTRP00000008397/1-1220 KFYNDYGDII KETLTRARQI DRSHCSRILL LXXXXLYTEL LQEQGPQGLN bmy_16101T0/1-1338 KFYSDYGDII KETLTRARQI DRSHCSRILL LSLKQLYTEL LQEQGPQGLN BACU012086/1-773 ---------- ---------- ---------- ---------- ---------- 1051 1100 ENSP00000400359/1-1225 ELPAFIEMRD LARRFALSFG PQQLQNRDLV VMLHKEGIQF SLSELPPAGS ENSBTAP00000013879/1-1284 ELPAFIEMRD LARRFALSFG PQQLQNRDLV VMLHKEGIKF SLSELPPAGS ENSTTRP00000008397/1-1220 ELPAFIEMRD LARRFALSFG PQQLQNRDLV VMLHKEGIRF SLSELPPAGS bmy_16101T0/1-1338 ELPAFIEMRD LARRFALSFG PQQLQNRDLV VMLHKEGIRF SLSELPPAGS BACU012086/1-773 ---------- ---------- ---------- ---------- ---------- 1101 1150 ENSP00000400359/1-1225 SNQPPNLAFL ELLSEFSPRL FHQDKQLLLS YLEKCLQHVS QAPGHPWGPV ENSBTAP00000013879/1-1284 SSQPPNLAFL ELLAEFSPRL FHQDKQLLLS YLEKCLQRVS QAPGRPWGPV ENSTTRP00000008397/1-1220 SSQPPNLAFL ELLSEFSPRL FHQDKQLLLS YLEKCLQRVS QAPGRPWGPV bmy_16101T0/1-1338 SSQPPNLAFL ELLSEFSPRL FHQDKQLLLS YLEKCLQRVS QAPGRPWGPV BACU012086/1-773 ---------- ---------- ---------- ---------- ---------- 1151 1200 ENSP00000400359/1-1225 TTYCHSLSPV ENTAETSPQV LPSSKRRRVE ---------- ---------- ENSBTAP00000013879/1-1284 TTYCHSLSPG ENTAEVSPQG YPRSKKRRVE ---------- ---------- ENSTTRP00000008397/1-1220 TTYCQSLSPV ESTAEANPQG YPRSKKRRIE ---------- ---------- bmy_16101T0/1-1338 TTYCQSLSPV ESTAEANPQG YPRSKKRRIE ALCLNQKQLT LRLPVQCTIK BACU012086/1-773 ---------- ---------- ---------- ---------- ---------- 1201 1250 ENSP00000400359/1-1225 --------GP AKPNREDVSS SQEESLQLNS IPPTPTLTST AVKSRQPLWG ENSBTAP00000013879/1-1284 --------GP SRQHREDISA SQEESLQPNS IPATPMLTST AVKSGQPLGA ENSTTRP00000008397/1-1220 --------GP SRRHREDISA SQEESLQLNS IPPTPTLTST AVKSRQPLGG bmy_16101T0/1-1338 AVGREDNGGP SRRHREDISA SQEESLQLNS IPPTPTLTST AVKSRQPLGG BACU012086/1-773 ---------- ---------- ---------- ---------- ---------- 1251 1300 ENSP00000400359/1-1225 LKEMEEEDGS ELDFAQGQPV AGTERSRFLG PQYFQTPHNP SGPGLGNQLM ENSBTAP00000013879/1-1284 SEEMEEGGSS ELAFPQGLYL LGNPRSRSLS PQHFQTPLNP SDPGLGKQLT ENSTTRP00000008397/1-1220 LEEMEEGGGS ELAFTQGQPL LGAQRLRSSS PQHFQTPLNS LGPGLGSRLT bmy_16101T0/1-1338 LEEMEEGGGS ELAFTQGQSL LGAQRLRSSS PQHFQTPLNS LRPGLGNRLT BACU012086/1-773 ---------- ---------- ---------- ---------- ---------- 1301 1350 ENSP00000400359/1-1225 RLSLMEE-DE EEELEIQDES NEERQDTDMQ ASSYSSTSER GLDLL-DSTE ENSBTAP00000013879/1-1284 RLSLMEE-D- EEELEIHDDL SEDWQGSGKS ----SSSSEH RLDLL-DSTE ENSTTRP00000008397/1-1220 RLSLMEE-D- EEELEIQNDS SEEWQGTGKQ ----SSPSEH GLDVL-DFTE bmy_16101T0/1-1338 RISDMTLCPS PSPLPISTPH LYDMTTWKRP MGNGAKGIIT SPPLVSEGKE BACU012086/1-773 ---------- ---------- ---------- ---------- ---------- 1351 1400 ENSP00000400359/1-1225 LDIEDF ENSBTAP00000013879/1-1284 LNTEDF ENSTTRP00000008397/1-1220 LNTEDF bmy_16101T0/1-1338 RWAVPF BACU012086/1-773 ------