KEY:
    ENSP* - Homo sapiens (Human)
    ENSBTA* - Bos taurus (Cow)
    ENSTTR* - Tursiops truncatus (Dolphin)
    bmy_* - Balaena mysticetus (Bowhead whale)
    BACU* - Balaenoptera acutorostrata (Minke whale)

Copy from below the line for a valid .msf file.

----------------------------------------------------------------------------------
                
NoName   MSF: 4  Type: P  Thu May 15 16:51:45 2014  Check: 00 ..

 Name: ENSBTAP00000013889/1-206  Len:    206  Check:  326  Weight:  1.00
 Name: ENSP00000263368/1-206     Len:    206  Check:  454  Weight:  1.00
 Name: bmy_11287T0/1-120         Len:    206  Check:  4941  Weight:  1.00
 Name: ENSTTRP00000006751/1-205  Len:    206  Check:  6363  Weight:  1.00

//


                          1                                                   50
ENSBTAP00000013889/1-206  MVVKKIALFG ATGNTGLTTL AQAVQAGYEV TVLVRDPSRL PSEGPQPAHV 
ENSP00000263368/1-206     MAVKKIAIFG ATGQTGLTTL AQAVQAGYEV TVLVRDSSRL PSEGPRPAHV 
bmy_11287T0/1-120         ---------- ---------- ---------- ---------- ---------- 
ENSTTRP00000006751/1-205  MAVKKIAIFG ATGRTGLTTL AQAVQAGYEV TVLVRD-TRL PSEGPQPAHV 


                          51                                                 100
ENSBTAP00000013889/1-206  VVGDVRQPAD VDKTVAGQDA VIVLLGTRND LSPTTVMSEG AQNIVAAMKA 
ENSP00000263368/1-206     VVGDVLQAAD VDKTVAGQDA VIVLLGTRND LSPTTVMSEG ARNIVAAMKA 
bmy_11287T0/1-120         ---------- ---------- ---------- ------MSEG AQNIVAAMKA 
ENSTTRP00000006751/1-205  IVGDVRQAAD VDKTVAGQDA VIVLLGTGND LSPTTVMSKG AQNIVAAMKA 


                          101                                                150
ENSBTAP00000013889/1-206  HGVDKVVACT SAFLLWDPSK VPPRLQDVTD DHIRMHKVLQ QSGLKYVAVM 
ENSP00000263368/1-206     HGVDKVVACT SAFLLWDPTK VPPRLQAVTD DHIRMHKVLR ESGLKYVAVM 
bmy_11287T0/1-120         HGVDKVVACT SAFLLWDPSK VPPRLQDVTD DHIRMHKILQ ESGLKYVAVM 
ENSTTRP00000006751/1-205  HGVDKVVACT SAFLLWDPSK VPPRLQDVTD DHIRMHKILQ QSGLKYVAVM 


                          151                                                200
ENSBTAP00000013889/1-206  PPHIGDHPLT GAYTVTLDGR GPSRVISKHD LGHFMLHCLT TDKYDGHTTY 
ENSP00000263368/1-206     PPHIGDQPLT GAYTVTLDGR GPSRVISKHD LGHFMLRCLT TDEYDGHSTY 
bmy_11287T0/1-120         PPHIGDQPLT GAYSVTLDGR GPSRVISKHD LGHFMLRCLT TDEYNGHNTY 
ENSTTRP00000006751/1-205  PPHIGDQPLT GAYSVTLDGR GPSRVISKHD LGHFMLRCLT TDEYNGHSTY 


                          201                                                250
ENSBTAP00000013889/1-206  PSHVYE 
ENSP00000263368/1-206     PSHQYQ 
bmy_11287T0/1-120         PSHQYD 
ENSTTRP00000006751/1-205  PSHQYD