KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:51:46 2014 Check: 00 .. Name: ENSP00000258770/1-631 Len: 682 Check: 3789 Weight: 1.00 Name: ENSTTRP00000009330/1-631 Len: 682 Check: 3460 Weight: 1.00 Name: bmy_22266T0/1-471 Len: 682 Check: 1072 Weight: 1.00 Name: BACU012587/1-632 Len: 682 Check: 8310 Weight: 1.00 Name: ENSBTAP00000013895/1-548 Len: 682 Check: 7419 Weight: 1.00 // 1 50 ENSP00000258770/1-631 MAAHLVKRCT CLLREAARQA PAMAPVGRLR LAWVAHKTLT SSATSPISHL ENSTTRP00000009330/1-631 MAARLVKRCT CFLREATRLA PAVSAVGQLR LARRAQKPLT SSATSSSSRL bmy_22266T0/1-471 MAARLVKRCT CLLREATRLA PAMSPVGQLT LARGAQKLLT PSATSSSSRL BACU012587/1-632 MAARLVKRCT CLLRDATRLA PAVSPVGQLR LARGAQKLLT SSATSSSSRL ENSBTAP00000013895/1-548 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000258770/1-631 PGSLMEPVEK ERASTPYIEK Q-VDHLIKKA TRPEELLELL GGSHDLDSNQ ENSTTRP00000009330/1-631 PGPLSELVEK EQVFTPYPER QEVDQLIEKA TRPEELLELL GGGHCLHENH bmy_22266T0/1-471 PGPLSELLEK EQVFTPYPER EEVDQLIEKA TRPEELLELL GGGHCLHQNH BACU012587/1-632 PGPLSELVEK EQVFTPYPER QEVDQLIEKA TRPEELLELL GGGHCLHQNH ENSBTAP00000013895/1-548 ---------- ---------- ---------- ----XLLELL GSGHCLQQNH 101 150 ENSP00000258770/1-631 AAMVLIRLSH LLSEKPEDKG LLIQDAHFHQ LLCLLNSQ-- ---------- ENSTTRP00000009330/1-631 AALTLIQLSR LLSEKPKDKA LLIQDARFRQ LLHLVNSQ-- ---------- bmy_22266T0/1-471 AALTLIQLSR LLSEKPKDKA LLIQDARFQQ LLHLVNSQLP LSAVQPHFTD BACU012587/1-632 AALTLIQLSR LLSEKPKDKA LLIQDARFQQ LLHLVNSQ-- ---------- ENSBTAP00000013895/1-548 AALALIQLSR LLSEKPKDKA ALIQDARFWQ LLHLVNSQ-- ---------- 151 200 ENSP00000258770/1-631 ---------- ---------- ---------- --------IA SVWHGTLSKL ENSTTRP00000009330/1-631 ---------- ---------- ---------- --------IT AVWHGTLVKL bmy_22266T0/1-471 EGSGDLQSGG VKSLSAADNR ALLSYRTLPS LGVGPEGSIT AVWHGTLVKL BACU012587/1-632 ---------- ---------- ---------- --------IT AVWHGTLVKL ENSBTAP00000013895/1-548 ---------- ---------- ---------- --------IT VVWHGTLVKL 201 250 ENSP00000258770/1-631 LGSLYALGIP KASKELQSVE QEVRWRMRKL KYKHLAFLAE SCATLSQEQH ENSTTRP00000009330/1-631 LRSLYALGLP PTSKELRSVE QEVRWRMRRL KYKHLAFLAE SSANYMQEQD bmy_22266T0/1-471 LRSLYALGLP ATSKELRSVE QEVRWRMRRL KYKHLAFLAE SSATYMQEQG BACU012587/1-632 LRSLYALGLP ATSKELRSVE QEVRWRMRRL KYKHLAFLAE SSATYMQEQG ENSBTAP00000013895/1-548 LRSLYTLGLP ATSKDLRSVE QEVRWRMRRL KYKHLAFLAE SSATYMQEQG 251 300 ENSP00000258770/1-631 SQELLAELLT HLERRWTEIE DSHTLVTVMM KVGHLSEPLM NRLEDKCLEL ENSTTRP00000009330/1-631 SQELLAELLV QLERRWAEID DSRMLVAMMM KTGHLSESLM TRLEDKCLEL bmy_22266T0/1-471 SRELLAELLV HLERRWAEID DSRMVVAMMM KTGHLSESLM TRLEDKCLEL BACU012587/1-632 SRELLAELLV HLERRWAEID DSRMVVAMMM KTGLLSESLM TRLEDKCLEL ENSBTAP00000013895/1-548 SRELLAELLV HLERRWAEIE DRRMVVAMMM KTGHLSESLM NRLEDKCLEL 301 350 ENSP00000258770/1-631 VEHFGPNELR KVLVMLAAQS RRSVPLLRAI SYHLVQKPFS LTKDVLLDVA ENSTTRP00000009330/1-631 VEHL-PEELR KVLVTLAAQN RRSVPLLRAI SYHLVQKPFP VTKGILLDLA bmy_22266T0/1-471 VEQFGPEELR KVLVTLAAQK RRSVPLLRAI SYHLVQKPFP LTKGILLDLA BACU012587/1-632 VEQFGPEELR KVLVTLAAQK RRSVPLLRAI SYHLVQKPFP LTKGILLDLA ENSBTAP00000013895/1-548 VEQFGPEELR KVLVTLAAQN RRSVPLLRAI SYHLVQKPFP LTKSILLDLA 351 400 ENSP00000258770/1-631 YAYGKLSFHQ TQVSQRLATD LLSLMPSLTS GEVAHCAKSF ALLKWLSLPL ENSTTRP00000009330/1-631 YAYGKLGFHQ TQVFQRLAAD LLPHTPSLTS SEVARCTKSF AFLKWLNLPL bmy_22266T0/1-471 YAYGKLGFHQ TQVFQRLAAD LLPHTPSLTS SEVARCTKSF AFLKWLNLPL BACU012587/1-632 YAYGKLGFHQ TQVFQRLAAD LLPHTPSLTS SEVARCTKSF AFLKWLNLPL ENSBTAP00000013895/1-548 YAYGKLGFHQ TQVFQRLAAD LLPHTPSMTS SEVARCTKSF AFLKWLNLPL 401 450 ENSP00000258770/1-631 FEAFAQHVLN RAQDITLPHL CSVLLAFARL NFHPDQEDQF FSLVHEKLGS ENSTTRP00000009330/1-631 FEAFAQHVLD RARSITLPHL YNMLLAFARV NFRPEREDPF FSLVHEKLGS bmy_22266T0/1-471 FEAFAQ---- ---------- ---------- ---------- ---------- BACU012587/1-632 FEAFAQHVLD RAQSVTLPHL YNMLLAFARV NFHPEREDLF FSLVHEKLGS ENSBTAP00000013895/1-548 FEAFVQHVLD RAQSITLPHL CNMLLAFARV NFRPEREDPF FSLVHEKLGS 451 500 ENSP00000258770/1-631 ELPGLEPALQ VDLVWALCVL QQAREAELQA VLHPEFHIQF LGGKSQKDQN ENSTTRP00000009330/1-631 ELAGLEPALQ VDVVWALCVL QQVLEAELQA VLHPEFHTQF LXXXXXXXXX bmy_22266T0/1-471 ---------- --VSWG---- ---------A DLRPG----- ---------- BACU012587/1-632 ELAGLEPAGQ VDVVWALCVL QQALEAELQA VLHPEFHTQF LGGESPKDQS ENSBTAP00000013895/1-548 ELVGLEPALQ VDVVWALCVL QQVREAELQA VLRPEFHTQF LGGKSPKDQS 501 550 ENSP00000258770/1-631 TFQKLLHINA TALLEYPEYS GPLLPASAVA PGPSALDRKV TPLQKELQET ENSTTRP00000009330/1-631 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_22266T0/1-471 -FEGLLC--- ---------- --LTPCFSQL P--------- ---------- BACU012587/1-632 TFQKLLHINA TAQLEHPEYT GPLLPASALV PRPSALDRKV TPLQKELQET ENSBTAP00000013895/1-548 TFQKLLHINA TAQLEHPEYT GPLLPTSALV PSPSALEQKM TPLQKELQET 551 600 ENSP00000258770/1-631 LKGLLGSADK GSLEVATQYG WVLDAEVLLD SDGEFLPVRD FVAPHLAQPT ENSTTRP00000009330/1-631 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_22266T0/1-471 ---------- GRFI------ ---------- ---------- ---------- BACU012587/1-632 LKGLLGSADK GSFMVATQYG WVLDAEVLLD TDSQLLPLRA FVAPHLSLPS ENSBTAP00000013895/1-548 LKGLLGSADK GSFMVPTQYG WVLDAEVLLD TESQLLPLRD FVAPHLTPPS 601 650 ENSP00000258770/1-631 GSQSPPPGSK RLAFLRWEFP NFNSRSKDLL GRFVLARRHI VAAGFLIVDV ENSTTRP00000009330/1-631 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXV bmy_22266T0/1-471 --REAPPA-- ------WKH- ---------- ---------- ----FLVANM BACU012587/1-632 GSQPLPPGAK RLAFLRWEFP NFNSRSKDLL GRFVMARRHL LAAGFLLVDV ENSBTAP00000013895/1-548 GSQPLPPGAK RLAFLRWEFP NFNSRSKDLL GRFMLARRHL LAAGFLLVDV 651 700 ENSP00000258770/1-631 PFYEWLELKS EWQKGAYLKD KMRKAVAEEL AK ENSTTRP00000009330/1-631 PYYEWLELKS EWQKSAYLKD KMRKAVAEEL AK bmy_22266T0/1-471 ESLFWL---- IWR------- EMIRFSSERK CS BACU012587/1-632 PYYEWLELKS EWQKSAYLKD KMRKAVAEEL AK ENSBTAP00000013895/1-548 PYYEWMELKS EWQKSAYLKD KMRKAVAEEL AK