KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:51:52 2014 Check: 00 .. Name: ENSP00000260630/1-543 Len: 543 Check: 2492 Weight: 1.00 Name: ENSBTAP00000013922/1-539 Len: 543 Check: 5242 Weight: 1.00 Name: ENSTTRP00000006681/1-543 Len: 543 Check: 858 Weight: 1.00 Name: bmy_17821T0/1-470 Len: 543 Check: 9304 Weight: 1.00 Name: BACU019264/1-543 Len: 543 Check: 9482 Weight: 1.00 // 1 50 ENSP00000260630/1-543 MGTSLSPNDP WPLNPLSIQQ TTLLLLLSVL ATVHVGQRLL RQRRRQLRSA ENSBTAP00000013922/1-539 MATGLSPDDH LSPTLLSVQQ TMLLLLLSVL AAVHVGQWLL RQRRRQPGSA ENSTTRP00000006681/1-543 MATSLSPDDH LPPIPLSAQQ TMLLLLLSVL AAVHVGQWLL RQRRRQPGSA bmy_17821T0/1-470 MATSLSPDEH LPPIPLSAQQ TMLLLLLSVL AAVHVGQWLL RQRRRQPGSA BACU019264/1-543 MATSLSPDER LPPIPLSAQQ TMLLLLLSVL AAVHVGQWLL RQRRRQPGSA 51 100 ENSP00000260630/1-543 PPGPFAWPLI GNAAAVGQAA HLSFARLARR YGDVFQIRLG SCPIVVLNGE ENSBTAP00000013922/1-539 PPGPFAWPLI GNAASMGSAP HLLFARLARR YGDVFQIHLG SCRVVVLNGE ENSTTRP00000006681/1-543 PPGPFAWPLI GNAASMGPAP HVSFARLARR YGDVFQIRLG SCPVVVLNGE bmy_17821T0/1-470 PPGPFAWPLI GNAASMGPAP HVSFARLARR YGDVFQIRLG SCRVVVLNGE BACU019264/1-543 PPGPFAWPLI GNAASMGPAP HVSFARLARR YGDVFQIRLG NCRVVVLNGE 101 150 ENSP00000260630/1-543 RAIHQALVQQ GSAFADRPAF ASFRVVSGGR SMAFGHYSEH WKVQRRAAHS ENSBTAP00000013922/1-539 RAIRQALVHQ SAAFADRPPF ASFRLVSGGR SLAFGQYSES WKAQRRAAHS ENSTTRP00000006681/1-543 RAIRQALVQQ GAAFADRPPF ASFRVVSGGR SLAFGQYSES WKAQRRAAYS bmy_17821T0/1-470 RAIRQALVQQ GAAFADRPPF ASFRVVSGGR SLAFGQYSES WKAQRRAAHS BACU019264/1-543 RAIRQALVQQ GAAFADRPPF ASFRVVSGGR SLAFGQYSES WKAQRRAAHS 151 200 ENSP00000260630/1-543 MMRNFFTRQP RSRQVLEGHV LSEARELVAL LVRGSADGAF LDPRPLTVVA ENSBTAP00000013922/1-539 TMRAFSTRQP RGRRVLEGHV VGEVRELVEL LVRRSAGGAF LDPRPLTLVA ENSTTRP00000006681/1-543 TMRAFSTRQP RGRRVLEGHV LGEARELVEL LVRGSAGGAF LDPRPLTVVA bmy_17821T0/1-470 TMRAFSTRQP RGRRVLEGHV LGEARELVEL LVRGSAGGAF LDPRPLTVVA BACU019264/1-543 TMRAFSTRQP RGRRVLEGHV LGEARELVEL MVRGSAGGAF LDPRPLTVVA 201 250 ENSP00000260630/1-543 VANVMSAVCF GCRYSHDDPE FRELLSHNEE FGRTVGAGSL VDVMPWLQYF ENSBTAP00000013922/1-539 VANVMSALCF GCRYSHDDAE FLELLSHNEE FGRTVGAGSL VDVLPWLQRF ENSTTRP00000006681/1-543 VANVMSTVCF GCRYSHDDAE FRELLSHNEE FGRTVGAGSL VDVLPWLQRF bmy_17821T0/1-470 VANVMSAVCF GCRYSHDDAE FRELLSHNEE FGRTVGAGSL VDVLPWLQRF BACU019264/1-543 VANVMSAVCF GCRYSHDDAE FRELLSHNEE FGRTVGAGSL VDVLPWLQRF 251 300 ENSP00000260630/1-543 PNPVRTVFRE FEQLNRNFSN FILDKFLRHC ESLRPGAAPR DMMDAFILSA ENSBTAP00000013922/1-539 PNPVRTAFRE FEQLNRNFSN FVLDKFLRHR ESLRPGAAPR DMMDAFIHSA ENSTTRP00000006681/1-543 PNPVRTAFRE FETLNRNFSS FVLDKFLRHR ESLRPGAAPR DMMDAFMLSA bmy_17821T0/1-470 PNPVRTAFRE FETLNRNFSN FVLDK----- ---------- ---------- BACU019264/1-543 PNPVRTAFRE FETLNRNFSN FVLDKFLRHR ESLRPGAAPR DMMDAFILSA 301 350 ENSP00000260630/1-543 EKKAAGDSHG GGARLDLENV PATITDIFGA SQDTLSTALQ WLLLLFTRYP ENSBTAP00000013922/1-539 G----ADSGD GGPRLDVDYV PATVTDIFGA SQDTLSTALQ WLLVLFTRYS ENSTTRP00000006681/1-543 GKEAAAGSGD GGARLDEEYV PATVTDIFGA SQDTLSTALQ WLLVFFTRYP bmy_17821T0/1-470 ---------- ---------- ---------- ---------- --------YP BACU019264/1-543 AKEAAPGSGD GGARLDEEYV PATVTDIFGA SQDTLSTALQ WLLVLFTRYP 351 400 ENSP00000260630/1-543 DVQTRVQAEL DQVVGRDRLP CMGDQPNLPY VLAFLYEAMR FSSFVPVTIP ENSBTAP00000013922/1-539 EVQARVQAEL DQVVGRHRLP TLEDQPRLPY VMAFLYEAMR FSSFVPVTIP ENSTTRP00000006681/1-543 EVQARVQAEL DQVVGRDRLP CLDDQPHLPY VMAFLYEAMR FSSFVPVTIP bmy_17821T0/1-470 EVQARVQAEL DQVVGRDRLP CLDDQPHLPY VMAFLYEAMR FSSFVPVTIP BACU019264/1-543 EVQARVQAEL DQVVGRDRLP CLDDQPHLPY VMAFLYEAMR FSSFVPVTIP 401 450 ENSP00000260630/1-543 HATTANTSVL GYHIPKDTVV FVNQWSVNHD PVKWPNPENF DPARFLDKDG ENSBTAP00000013922/1-539 HATTANASVL GYHIPKDTVV FVNQWSVNHD PVKWSNPEDF DPTRFLDKDG ENSTTRP00000006681/1-543 HATTANASVL GYHIPKDTVV FVNQWSVNHD PVKWSNPEDF DPARFLDKDG bmy_17821T0/1-470 HATTANASVL GYHIPKDTVV FVNQWSVNHD PVKWSNPEDF DPARFLDKDG BACU019264/1-543 HATTANASVL GYHIPKDTVV FVNQWSVNHD PVKWSNPEDF DPARFLDKDG 451 500 ENSP00000260630/1-543 LINKDLTSRV MIFSVGKRRC IGEELSKMQL FLFISILAHQ CDFRANPNEP ENSBTAP00000013922/1-539 LINKDLTGSV MVFSVGKRRC IGEEISKMQL FLFISILAHQ CNFKANPDEP ENSTTRP00000006681/1-543 FINKDLASSV MIFSVGKRRC IGEEISKTQL FLFISILAHE CNFRANPDEP bmy_17821T0/1-470 FINKDLASSV MIFSVGKRRC IGEELSKMQL FLFISILAHE CNFRANPDEP BACU019264/1-543 FINKDLASSV MIFSVGKRRC IGEELSKMQL FLFISILAHE CNFRANPDEP 501 550 ENSP00000260630/1-543 AKMNFSYGLT IKPKSFKVNV TLRESMELLD SAVQNLQAKE TCQ ENSBTAP00000013922/1-539 SKMDFNYGLT IKPKSFKINV TLRESMELLD SAVQKLQVEK ECQ ENSTTRP00000006681/1-543 SKMDFNYGLT IKPKSFKINV TLRESMELLD SAVQKLQAEE DCQ bmy_17821T0/1-470 SKMDFNYGLT IKPKSFKINV TLRESMELLD SAVQKLQAEE DCQ BACU019264/1-543 SKMDFNYGLT IKPKSFKINV TLRESMELLD SAVQKLQAEE DCQ