KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:51:55 2014 Check: 00 .. Name: ENSTTRP00000010776/1-493 Len: 570 Check: 9 Weight: 1.00 Name: ENSP00000413697/1-493 Len: 570 Check: 1210 Weight: 1.00 Name: ENSBTAP00000013932/1-492 Len: 570 Check: 4093 Weight: 1.00 Name: bmy_01182T0/1-510 Len: 570 Check: 6539 Weight: 1.00 Name: BACU000881/1-569 Len: 570 Check: 7484 Weight: 1.00 // 1 50 ENSTTRP00000010776/1-493 MDFLLGNPFS SPVGQRIEKA TDGSLQSENW ALNMEICDII NETEEGPKDA ENSP00000413697/1-493 MDFLLGNPFS SPVGQRIEKA TDGSLQSEDW ALNMEICDII NETEEGPKDA ENSBTAP00000013932/1-492 MDFLLGNPFS SPVGQRIEKA TDGSLQSEDW ALNMEICDII NETEEGPKDA bmy_01182T0/1-510 MDFLLGNPFS SPVGQRIEKA TDGSLQSENW ALNMEICDII NETEEGPKDA BACU000881/1-569 MDFLLGNPFS SPVGQRIEKA TDGSLQSENW ALNMEICDII NETEEGPKDA 51 100 ENSTTRP00000010776/1-493 FRAVKKRIVG NKNFHEVMLA LTVLETCVKN CGHRFHVLVA SQDFVEGVLV ENSP00000413697/1-493 LRAVKKRIVG NKNFHEVMLA LTVLETCVKN CGHRFHVLVA SQDFVESVLV ENSBTAP00000013932/1-492 FRAVKKRIVG NKNFHEVMLA LTVLETCVKN CGHRFHVLVA SQDFVEGVLV bmy_01182T0/1-510 FRAVKKRIVG NKNFHEVMLA LTVLETCVKN CGHRFHLLVA SQDFVEGVLV BACU000881/1-569 FRAVKKRIVG NKNFHEVMLA LTVLETCVKN CGHRFHVLVA SQDFVEGVLV 101 150 ENSTTRP00000010776/1-493 KTILPKNNPP TIVHDKVLTL IQSWADAFRS SPDLTGVVAV YEDLRRKGLE ENSP00000413697/1-493 RTILPKNNPP TIVHDKVLNL IQSWADAFRS SPDLTGVVTI YEDLRRKGLE ENSBTAP00000013932/1-492 RTILPKNNPP TIVHDKVLTL IQSWADAFRS SPDLTGVVAV YEDLRRKGLE bmy_01182T0/1-510 RTILPKNNPP TIVHDKVLTL IQSWADAFRS SPDLTGVVAV YEDLRRKGLE BACU000881/1-569 RTILPKNNPP TIVHDKVLTL IQSWADAFRS SPDLTGVVAV YEDLRRKGLE 151 200 ENSTTRP00000010776/1-493 FPMTDLDMLS PIHTPQRTVF NSETPSGQNS SVGTDASHQG DSGQHTTPLP ENSP00000413697/1-493 FPMTDLDMLS PIHTPQRTVF NSETQSGQD- SVGTDSSQQE DSGQHAAPLP ENSBTAP00000013932/1-492 FPMTDLDMLS PIHTPQRTVF NSETQSGQN- SVGTDTSHRG DSNQQTTPLH bmy_01182T0/1-510 FPMTDLDMLS PIHTPQRTVF NSETPSGQNS SVGTDASHQG DSGQHTTPLP BACU000881/1-569 FPMTDLDMLS PIHTPQRTVF NSETPSGQNS SVGTDASHQG DSGQHTTPLP 201 250 ENSTTRP00000010776/1-493 TLALLPSDTP ITPTAEQIGK LRSELEMVSG NVRVMSEMLT ELVPTQAEPA ENSP00000413697/1-493 APPILSGDTP IAPTPEQIGK LRSELEMVSG NVRVMSEMLT ELVPTQAEPA ENSBTAP00000013932/1-492 TSALLPSDTP ITPTPEQIGK LRSELEMVSG NVRVMSEMLT ELVPTQTEPA bmy_01182T0/1-510 TVALLPSDTP IMPTAEQIGK LRSELEMVSG NVRVMSEMLT ELVPTQAEPA BACU000881/1-569 TLALLPSDTP IMPTAEQIGK LRSELEMVSG NVRVMSEMLT ELVPTQAEPA 251 300 ENSTTRP00000010776/1-493 DLELLQXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000413697/1-493 DLELLQELNR TCRAMQQRVL ELIPQIANEQ LTEELLIVND NLNNVFLRHE ENSBTAP00000013932/1-492 DLELLQELNR TCRSMQQRVL ELIPRIANEQ LTEELLIVND NLNNVFLRHE bmy_01182T0/1-510 DLELLQELNR TCRAMQQRVL ELIPRVASEQ LTEELLTVND DLNNVFLRHE BACU000881/1-569 DLELLQELNR TCRAMQQRVL ELIPRVASEQ LTEELLTVND DLNNVFLRHE 301 350 ENSTTRP00000010776/1-493 XFERFRTGQT AKAPSEAEVA ADLIDMGPDP AATSSLSSQL AGMNLGSSSV ENSP00000413697/1-493 RFERFRTGQT TKAPSEAEPA ADLIDMGPDP AATGNLSSQL AGMNLGSSSV ENSBTAP00000013932/1-492 RFERLRTGQT TKAPSEAEAA PDLIDMGPDP VATGNLSSQL AEMNLGSSSV bmy_01182T0/1-510 RFERFRTGQN AKAPSEAEAA ADLIDMGPDP AATSSLSSQL AGMNLGSSSM BACU000881/1-569 RFERFRTGQN AKAPSEAEAA ADLIDMGPDP AATSSLSSQL AGMNLGSSSV 351 400 ENSTTRP00000010776/1-493 RAGLQSLETS GRLEDEFDMF ALTRGSSLAD QRKEVKYEAP QATDGLAGAL ENSP00000413697/1-493 RAGLQSLEAS GRLEDEFDMF ALTRGSSLAD QRKEVKYEAP QATDGLAGAL ENSBTAP00000013932/1-492 RAGLQSLEAS GRLEDEFDMF ALTRGSSLAD QRKEVKYEAP QATDGLAGAL bmy_01182T0/1-510 RAGLQSLEAS GRLEDEFDMF ALTRGSSLAD QRKEVKYEAP QATDGLAGAL BACU000881/1-569 RAGLQSLEAS GRLEDEFDMF ALTRGSSLAD QRKEVKYEAP QATDGLAGAL 401 450 ENSTTRP00000010776/1-493 DARQQSTGAI PVTQACFMED IEQWLSTDV- ---------- ---------- ENSP00000413697/1-493 DARQQSTGAI PVTQACLMED IEQWLSTDV- ---------- ---------- ENSBTAP00000013932/1-492 DARQQSTGAI PVTQACLMED IEKWLSTDV- ---------- ---------- bmy_01182T0/1-510 DARQQSTGAI PVTQACLMED IEQWLSTDVR RARPRTPRSL WGLRFPEPAA BACU000881/1-569 DARQQSTGAI PITQACLMED IEQWLSTDVR RARPRTPRSL WGLPFPEAAA 451 500 ENSTTRP00000010776/1-493 ---------- ---------- ---------- ---------- ---------- ENSP00000413697/1-493 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000013932/1-492 ---------- ---------- ---------- ---------- ---------- bmy_01182T0/1-510 DRGPTVGRT- ---------- ---------- ---------- ---------- BACU000881/1-569 DRGPTVGRTA SATPPPILGA KDQVPGHFQA QRPPSASGQD HVSAQGQEKV 501 550 ENSTTRP00000010776/1-493 -----GNHAE EPKGVTSE-E FDKFLEERAK VADRLPNVSS PSAEGPPGPP ENSP00000413697/1-493 -----GNDAE EPKGVTSEGK FDKFLEERAK AADRLPNLSS PSAEGPPGPP ENSBTAP00000013932/1-492 -----GNDVE EPKGVTSE-E FDKFLEERAK VADRLPNLSS PSTEGPPGPP bmy_01182T0/1-510 ---------- ---------E FDKFLEERAK VADRLPSLSS PSAEGPPGPP BACU000881/1-569 HPFHLGNHAE EPEGVTSE-E FDKFLEERAK VADRLPSLSS PSAEGAPGPP 551 600 ENSTTRP00000010776/1-493 PGSAPRKKTQ EKDDDVLFAL ENSP00000413697/1-493 SGPAPRKKTQ EKDDDMLFAL ENSBTAP00000013932/1-492 PGTALRKKTQ EKDDDMLFAL bmy_01182T0/1-510 PGSAPRKKTQ EKDDDMLFAL BACU000881/1-569 PGSAPRKKTQ EKDDDVLFAL