KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:51:56 2014 Check: 00 .. Name: ENSTTRP00000001917/1-1012 Len: 1042 Check: 3723 Weight: 1.00 Name: ENSP00000292408/1-802 Len: 1042 Check: 2000 Weight: 1.00 Name: ENSBTAP00000013942/1-800 Len: 1042 Check: 5837 Weight: 1.00 Name: bmy_08385T0/1-793 Len: 1042 Check: 6978 Weight: 1.00 Name: BACU018566/1-987 Len: 1042 Check: 3102 Weight: 1.00 // 1 50 ENSTTRP00000001917/1-1012 PYMWHLHVPV CMCLGTVACC PACVPCTMCV ICTRGMAFAL HIPSVACGCV ENSP00000292408/1-802 ---------- ---------- --MRLLLALL GVLLSVP--- ---------- ENSBTAP00000013942/1-800 ---------- ---------- --MRLLLVLL GVLLGAP--- ---------- bmy_08385T0/1-793 ---------- ---------- ----MFSVC- ---RGLT--- ---------- BACU018566/1-987 ---------- -------MSC PACVLCTVCV KCTRGVAFAL HIPSVACGCV 51 100 ENSTTRP00000001917/1-1012 YVEEQQCQHV SRGAPAMSVQ HVLCMQGADS ATDLCPRPTE PCLAPSPGQQ ENSP00000292408/1-802 ---------- --GPPVLS-- ----LEASE- EVEL-----E PCLAPSLEQQ ENSBTAP00000013942/1-800 ---------- --GAPALS-- ----FEASE- ETEL-----E PCLAPSPEQQ bmy_08385T0/1-793 ---------- ---------- --------Q- LTDLCPRPTE PCLAPSPEQQ BACU018566/1-987 YVEEQQC-HV SRGAPAMSVQ HVLCMQGAD- LTALCPRPTE PCLAPSPEQQ 101 150 ENSTTRP00000001917/1-1012 EQELTVALGQ PVRLCCGWAE RSGHWYKEGS RLAPAGRVRG WRGRLEIASF ENSP00000292408/1-802 EQELTVALGQ PVRLCCGRAE RGGHWYKEGS RLAPAGRVRG WRGRLEIASF ENSBTAP00000013942/1-800 EQELTVALGQ PVRLCCGRAE RSGHWYKEGS RLTPAGRVRG WRGRLEIASF bmy_08385T0/1-793 EQELTVALGQ PVRLCCGWAE RSGHWYKEGS RLAPAGRVRG WRGRLEIASF BACU018566/1-987 EQELTVALGQ PVRLCCGWAE RSGHWYKEGS RLAPAGRVRG WRGRLEIASF 151 200 ENSTTRP00000001917/1-1012 LPEDAGRYLC LTRGSMLVLH NVTLVVDDSP PAMVMRT--- --PRPTEAPR ENSP00000292408/1-802 LPEDAGRYLC LARGSMIVLQ NLTLITGD-- --SLTSSNDD EDPKSHRDPS ENSBTAP00000013942/1-800 LPEDAGQYLC LSRGSLL-LH NVTLVVDD-- --SMTSSNGD EDPKIHRGPL bmy_08385T0/1-793 LPEDAGRYLC LTRGSMLVLH NVTLVVDD-- --SMTSINGD EDPKTHRGPS BACU018566/1-987 LPEDAGRYLC LTRGSMLVLH NVTLVVDA-- --MVMRT--- --PRPTEAPR 201 250 ENSTTRP00000001917/1-1012 MSTFTPSK-V SVTPRTHSPV FQLVTEKRSV CKQVVLLRAL SSPFPSPPAP ENSP00000292408/1-802 NRHSYPQQ-- ---------- ---------- ---------- --------AP ENSBTAP00000013942/1-800 NGHVYPQQ-- ---------- ---------- ---------- --------AP bmy_08385T0/1-793 NEHIYPQQGQ CDSSRTHSPA FQLVTEKRSV CKQVVLLRAL SSPFPSPPAP BACU018566/1-987 MSTFTPSK-- VSVTPTHSPA FHLVTEKRSV CKQVVLLRAL SSPFPSPPAP 251 300 ENSTTRP00000001917/1-1012 YWTHPQRMEK KLHAVPAGNT IKFRCPAAGN PMPTIRWLKD GQDFHGEHRI ENSP00000292408/1-802 YWTHPQRMEK KLHAVPAGNT VKFRCPAAGN PTPTIRWLKD GQAFHGENRI ENSBTAP00000013942/1-800 YWTHPQRMEK KLHAVPAGNT VKFRCPAAGN PMPTIRWLKD GQDFHGEHRI bmy_08385T0/1-793 YWTHPQRMEK KLHAVPAGNT IKFRCPAAGN PTPTIRWLKD GQDFHGEHRI BACU018566/1-987 YWTHPQRMEK KLHAVPAGNT IKFRCPAAGN PTPTIRWLKD GQDFHGEHRI 301 350 ENSTTRP00000001917/1-1012 GGIRLRHQHW SLVMESVVPS DRGTYTCLVE NSLGSIRYSY LLDVLERSPH ENSP00000292408/1-802 GGIRLRHQHW SLVMESVVPS DRGTYTCLVE NAVGSIRYNY LLDVLERSPH ENSBTAP00000013942/1-800 GGIRLRHQHW SLVMESVVPS DRGTYTCLVE NSLGSIRYSY LLDVLERSPH bmy_08385T0/1-793 GGIRLRHQHW SLVMESVVPS DRGTYTCLVE NSLGSIRYSY LLDVLERSPH BACU018566/1-987 GGIRLRHQHW SLVMESVVPS DRGTYTCLVE NSLTSIRYSY LLDVLERSPH 351 400 ENSTTRP00000001917/1-1012 RPILQAGLPA NTTAVVGSDV ELLCKVYSDA QPHIQWLKHI VINGSSFGAD ENSP00000292408/1-802 RPILQAGLPA NTTAVVGSDV ELLCKVYSDA QPHIQWLKHI VINGSSFGAD ENSBTAP00000013942/1-800 RPILQAGLPA NTTAVVGSDV ELLCKVYSDA QPHIQWLKHI VINGSSFGAD bmy_08385T0/1-793 RPILQAGLPA NTTAVVGSDV ELLCKVYSDA QPHIQWLKHI VINGSSFGAD BACU018566/1-987 RPILQAGLPA NTTAVVGSDV ELLCKVYSDA QPHIQWLKHI VVNGSSFGAD 401 450 ENSTTRP00000001917/1-1012 GFPYVQVLKT ADINSSEVEV LYLRNVSAED AGEYTCLAGN SIGLSYQSAW ENSP00000292408/1-802 GFPYVQVLKT ADINSSEVEV LYLRNVSAED AGEYTCLAGN SIGLSYQSAW ENSBTAP00000013942/1-800 GFPYVQVLKT ADINSSEVEV LYLRNVSAED AGEYTCLAGN SIGLSYQSAW bmy_08385T0/1-793 GFPYVQVLKT ADINSSEVEV LYLRNVSAED AGEYTCLAGN SIGLSYQSAW BACU018566/1-987 GFPYVQVLKT ADINSSEVEV LYLRNVSAED AGEYTCLAGN SIGLSYQSAW 451 500 ENSTTRP00000001917/1-1012 LTVLTGELLR GQERLRDSAV VPQGLPVGIV FLGLWGLVWD VVCGFVCLS- ENSP00000292408/1-802 LTVLP----- ---------- ---------- ---------- ---------- ENSBTAP00000013942/1-800 LTVLP----- ---------- ---------- ---------- ---------- bmy_08385T0/1-793 LTVLT----- ---------- ---------- ---------- ---------- BACU018566/1-987 LTVLTGELLR G-ERLRDSAV VPQGCDLLGV FLGLWGL-WD VVCGFVCLIL 501 550 ENSTTRP00000001917/1-1012 -VAVPLCVST CDCPCDSLGC WYEGWGVNAV SFVCVPMYVG SYEGLEE--- ENSP00000292408/1-802 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000013942/1-800 ---------- ---------- ---------- ---------- ---------- bmy_08385T0/1-793 ---------- ---------- ---------- ---------- ---------- BACU018566/1-987 LVAVPLCVST CDCPCDSLGC GYAGRGVNAV FLVCVPVYVG SHEGLSRGSR 551 600 ENSTTRP00000001917/1-1012 ---------- --------WV XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000292408/1-802 ---------- ---------- ---------- ---------- --EEDPTWTA ENSBTAP00000013942/1-800 ---------- ---------- ---------- ---------- --EEDLTWTA bmy_08385T0/1-793 ---------- ---------- ---------- ---------- --EEDLMWTA BACU018566/1-987 ASHLITDWSV SVCVYVSLWA ---------- ---------- --EEDLMWTA 601 650 ENSTTRP00000001917/1-1012 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXTVQKLS ENSP00000292408/1-802 AAPEARYTDI ILYASGSLAL AVLLLLAGLY RGQALHGRHP RPPATVQKLS ENSBTAP00000013942/1-800 TAPEGRYTDI ILYSSGSLAL IVFLLLVGLY RRQTLLTRHH RQPATVQKLS bmy_08385T0/1-793 TAPEARYTDV ILYTSGSLAL MVLLLLAGLY RRQVLLGRHP RQPATVQKLS BACU018566/1-987 TAPEGRYTDI ILYTSGSLAL MVLLLLAGLY RRQVLLGRHP RQPATVQKLS 651 700 ENSTTRP00000001917/1-1012 RFPLARQFSL ESGSSAKSSS SLVRGVRLSS SGPPLLAGLV NLDLPLDPLW ENSP00000292408/1-802 RFPLARQFSL ESGSSGKSSS SLVRGVRLSS SGPALLAGLV SLDLPLDPLW ENSBTAP00000013942/1-800 RFPLARQFSL ESGSSAKSSL SLVRGVRLSS SGPPLLAGLV SLDLPLDPLW bmy_08385T0/1-793 RFPLARQFSL ESGSSAKSSS SLVRGVRLSS SGPPLLAGLV NLDLPLDPLW BACU018566/1-987 RFPLARQFSL ESGSSAKSSS SLVRGVRLSS SGPPLLAGLV NLDLPLDPLW 701 750 ENSTTRP00000001917/1-1012 EFPRDRLVLG KPLGEGCFGQ VVCAEAFGMD PIRPDQASTV AVKMLKDNAS ENSP00000292408/1-802 EFPRDRLVLG KPLGEGCFGQ VVRAEAFGMD PARPDQASTV AVKMLKDNAS ENSBTAP00000013942/1-800 EFPRDRLVLG KPLGEGCFGQ VVCAEAFGMD PTRPDQASTV AVKMLKDNAS bmy_08385T0/1-793 EFPRDRLVLG KPLGEGCFGQ VVCAEAFGMD PIRPDQASTV AVKMLK---- BACU018566/1-987 EFPRDRLVLG KPLGEGCFGQ VVCAEAFGMD PIRPDQASTV AVKMLKDNAS 751 800 ENSTTRP00000001917/1-1012 DKDLADLVSE MEVMKLIGRH KNIINLLGVC TQEGPLYVIV ECAAKGNLRE ENSP00000292408/1-802 DKDLADLVSE MEVMKLIGRH KNIINLLGVC TQEGPLYVIV ECAAKGNLRE ENSBTAP00000013942/1-800 DKDLADLVSE MEVMKLIGRH KNIINLLGVC TQEGPLYVIV ECAAKGNLRE bmy_08385T0/1-793 ---------- ---------- ---------- ---GPLYVIV ECAAKGNLRE BACU018566/1-987 DKDLADLVSE MEVMKLIGRH KNIINLLGVC TQEGPLYVIV ECAAKGNLRE 801 850 ENSTTRP00000001917/1-1012 FLRARRPPGP DLSPDGPRSS EGPLSFPALV SCAYQVARGM QYLESRKCIH ENSP00000292408/1-802 FLRARRPPGP DLSPDGPRSS EGPLSFPVLV SCAYQVARGM QYLESRKCIH ENSBTAP00000013942/1-800 FLRARRPPGP DLSPDGPRSS EGPLSFPALV SCAYQVARGM QYLESRKCIH bmy_08385T0/1-793 FLRARRPPGP DLSPDGPRSS EGPLSFPALV SCAYQVARGM QYLESRKCIH BACU018566/1-987 FLRARRPPGP DLSPDGPRSS EGPLSFPALV SCAYQVARGM QYLESRKCIH 851 900 ENSTTRP00000001917/1-1012 RDLAARNVLV TEDNVMKIAD FGLARGIHHI DYYKKTSNGR LPVKWMAPEA ENSP00000292408/1-802 RDLAARNVLV TEDNVMKIAD FGLARGVHHI DYYKKTSNGR LPVKWMAPEA ENSBTAP00000013942/1-800 RDLAARNVLV TEDNVMKIAD FGLARGIHHI DYYKKTSNGR LPVKWMAPEA bmy_08385T0/1-793 RDLAARNVLV TEDNVMKIAD FGLARGIHHI DYYKKTSNGR LPVKWMAPEA BACU018566/1-987 RDLAARNVLV TEDNVMKIAD FGLARGIHHI DYYKKTSNGR LPVKWMAPEA 901 950 ENSTTRP00000001917/1-1012 LFDRVYTHQS DVWSFGILLW EIFTLGGSPY PGIPVEELFS LLREGHRMDR ENSP00000292408/1-802 LFDRVYTHQS DVWSFGILLW EIFTLGGSPY PGIPVEELFS LLREGHRMDR ENSBTAP00000013942/1-800 LFDRVYTHQS DVWSFGILLW EIFTLGGSPY PGIPVEELFS LLREGHRMDR bmy_08385T0/1-793 LFDRVYTHQS DVWSFGILLW EICTLGGSPY PGIPVEELFS LLREGHRMDR BACU018566/1-987 LFDRVYTHQS DVWSFGILLW EICTLGGSPY PGIPVEELFS LLREGHRMDR 951 1000 ENSTTRP00000001917/1-1012 PPHCPPELYG LMRECWHAAP SQRPTFKQLV EALDKVLLAV SEEYLDLRLT ENSP00000292408/1-802 PPHCPPELYG LMRECWHAAP SQRPTFKQLV EALDKVLLAV SEEYLDLRLT ENSBTAP00000013942/1-800 PPHCPPELYG LMRECWHAAP SQRPTFKQLV EALDKVLLAV SEEYLDLRLT bmy_08385T0/1-793 PPHCPPELYG LMRECWHAAP SQRPTFKQLV EALDKVLLAV SEEYLDLRLT BACU018566/1-987 PPHCPPELYG LMRECWHAAP SQRPTFKQLV EALDKVLLAV SEEYLDLRLT 1001 1050 ENSTTRP00000001917/1-1012 FGPYSPAGGD ASSTCSSSDS VFSHDPLPLG PSPFSF-PGV QT ENSP00000292408/1-802 FGPYSPSGGD ASSTCSSSDS VFSHDPLPLG SSSFPFGSGV QT ENSBTAP00000013942/1-800 FGPYSPAGGD ASSTCSSSDS VFSHDPLPLR PSSFSF-PGV QT bmy_08385T0/1-793 FGPYSPAGGD ASSTCSSSDS VFSHDPLPLG PSPFSF-PGV QT BACU018566/1-987 FGPYSPAGGD ASSTCSSSDS VFSHDPLPLG PSPFSF-PGV QT