KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:52:00 2014 Check: 00 .. Name: bmy_20020T0/1-604 Len: 726 Check: 8515 Weight: 1.00 Name: ENSP00000305918/1-726 Len: 726 Check: 5139 Weight: 1.00 Name: ENSBTAP00000013992/1-722 Len: 726 Check: 1161 Weight: 1.00 Name: BACU016169/1-722 Len: 726 Check: 4268 Weight: 1.00 Name: ENSTTRP00000005012/1-722 Len: 726 Check: 2677 Weight: 1.00 // 1 50 bmy_20020T0/1-604 MSTTTTVTPA GIPAVPGPVN PPPPEVSNPA KPGRKTNQLQ YMQNVVVKTL ENSP00000305918/1-726 MSTATTVAPA GIPATPGPVN PPPPEVSNPS KPGRKTNQLQ YMQNVVVKTL ENSBTAP00000013992/1-722 MSTATPVAPT GIPAAPGPVN PPPPEVSNPA KPGRKTNQLQ YMQNVVVKTL BACU016169/1-722 MSTTTTVTPA GIPAVPGPVN PPPPEVSNPA KPGRKTNQLQ YMQNVVVKTL ENSTTRP00000005012/1-722 MSTTTTVAPA GIPAVPGPVN PPPPEVSNPA KPGRKTNQLQ YMQNVVVKTL 51 100 bmy_20020T0/1-604 WKHQFAWPFY QPVDAIKLNL PDYHKIIKNP MDMGTIKKRL ENNYYWSASE ENSP00000305918/1-726 WKHQFAWPFY QPVDAIKLNL PDYHKIIKNP MDMGTIKKRL ENNYYWSASE ENSBTAP00000013992/1-722 WKHQFAWPFY QPVDAIKLNL PDYHKIIKNP MDMGTIKKRL ENNYYWSASE BACU016169/1-722 WKHQFAWPFY QPVDAIKLNL PDYHKIIKNP MDMGTIKKRL ENNYYWSASE ENSTTRP00000005012/1-722 WKHQFAWPFY QPVDAIKLNL PDYHKIIKNP MDMGTIKKRL ENNYYWSASE 101 150 bmy_20020T0/1-604 CMQDFNTMFT NCYIYNKPTD DIVLMAQALE KIFLQKVAQM PQEEVELLPP ENSP00000305918/1-726 CMQDFNTMFT NCYIYNKPTD DIVLMAQALE KIFLQKVAQM PQEEVELLPP ENSBTAP00000013992/1-722 CMQDFNTMFT NCYIYNKPTD DIVLMAQALE KIFLQKVAQM PQEEVELLPP BACU016169/1-722 CMQDFNTMFT NCYIYNKPTD DIVLMAQALE KIFLQKVAQM PQEEVELLPP ENSTTRP00000005012/1-722 CMQDFNTMFT NCYIYNKPTD DIVLMAQALE KIFLQKVAQM PQEEVELLPP 151 200 bmy_20020T0/1-604 APKSKGRKPA SGTQSAGTQQ VAAVSSVSPA TPFQSVPPTV SQTPVIAATP ENSP00000305918/1-726 APKGKGRKPA AGAQSAGTQQ VAAVSSVSPA TPFQSVPPTV SQTPVIAATP ENSBTAP00000013992/1-722 APKGKGRKPA SGTQSAGSQQ VAAVSSVCPA TPFQSVPPTV SQTPVIAATP BACU016169/1-722 APKGKGRKPA SGTQSAGTQQ VAAVSSVSPA TPFQSVPPTV SQTPVIAATP ENSTTRP00000005012/1-722 APKGKGRKPA SGTQSAGTQQ VAAVSSVSPA TPFQSVPPTV SQTPVIAATP 201 250 bmy_20020T0/1-604 VPTITANVTS APVPPAAAPP PPATPIIPVV PPTPPVVKKK GVKRKADTTT ENSP00000305918/1-726 VPTITANVTS VPVPPAAAPP PPATPIVPVV PPTPPVVKKK GVKRKADTTT ENSBTAP00000013992/1-722 VPTITANATP VPVPPAAAPP PPATPIIPVV PPTPPVVKKK GVKRKADTTT BACU016169/1-722 VPTITANVTS APVPPAAAPP PPATPIIPVV PPTPPVVKKK GVKRKADTTT ENSTTRP00000005012/1-722 VPTITANVTS APVPPAAAPP PPATPIIPVV PPTPPVVKKK GVKRKADTTT 251 300 bmy_20020T0/1-604 PTTSAITASR SESPPPLSDP KQAKVVARRE SGGRPIKPPK KDLEDGEVPQ ENSP00000305918/1-726 PTTSAITASR SESPPPLSDP KQAKVVARRE SGGRPIKPPK KDLEDGEVPQ ENSBTAP00000013992/1-722 PTTSAITASR SESPPPLSDP KQAKVVARRE SGGRPIKPPK KDLEDGEVPQ BACU016169/1-722 PTTSAITASR SESPPPLSDP KQAKVVARRE SGGRPIKPPK KDLEDGEVPQ ENSTTRP00000005012/1-722 PTTSAITASR SESPPPLADP KQAKVVARRE SGGRPIKPPK KDLEDGEVPQ 301 350 bmy_20020T0/1-604 HAGKKGRLSE HLRHCDSILK EMLSKKHAAY AWPFYKPVDA EALELHDYHD ENSP00000305918/1-726 HAGKKGKLSE HLRYCDSILR EMLSKKHAAY AWPFYKPVDA EALELHDYHD ENSBTAP00000013992/1-722 HAGKKGRLSE HLRHCDSILK EMLSKKHAAY AWPFYKPVDA EALELHDYHD BACU016169/1-722 HAGKKGRLSE HLRHCDSILK EMLSKKHAAY AWPFYKPVDA EALELHDYHD ENSTTRP00000005012/1-722 HAGKKGRLSE HLRHCDSILK EMLSKKHAAY AWPFYKPVDA EALELHDYHD 351 400 bmy_20020T0/1-604 IIKHPMDLST VKKKMDSREY PDAQGFAADI RLMFSNCYKY NPPDHEVVAM ENSP00000305918/1-726 IIKHPMDLST VKRKMDGREY PDAQGFAADV RLMFSNCYKY NPPDHEVVAM ENSBTAP00000013992/1-722 IIKHPMDLST VKKKMDSREY PDAQGFAADI RLMFSNCYKY NPPDHEVVAM BACU016169/1-722 IIKHPMDLST VKKKMDSREY PDAQGFAADI RLMFSNCYKY NPPDHEVVAM ENSTTRP00000005012/1-722 IIKHPMDLST VKKKMDSREY PDAQGFAADI RLMFSNCYKY NPPDHEVVAM 401 450 bmy_20020T0/1-604 ARKLQDVFEM RFAKMPDEPV EAPTLPVPAA PVVSKGVESS RSSEESSSDS ENSP00000305918/1-726 ARKLQDVFEM RFAKMPDEPV EAPALPAPAA PMVSKGAESS RSSEESSSDS ENSBTAP00000013992/1-722 ARKLQDVFEM RFAKMPDEPA EAPALPAPAA PVVSKGVESS RSSDESSSDS BACU016169/1-722 ARKLQDVFEM RFAKMPDEPV EAPTLPVPAA PAVSKGMESS RSSEESSSDS ENSTTRP00000005012/1-722 ARKLQDVFEM RFAKMPDEPV EAPTLPVPAA PVVSKGVESS CSSEESSTDS 451 500 bmy_20020T0/1-604 GSSDSEEERA TRLAELQEQV SG-------- ---------- -----RGRAG ENSP00000305918/1-726 GSSDSEEERA TRLAELQEQL KAVHEQLAAL SQAPVNKPKK KKEKKEKEKK ENSBTAP00000013992/1-722 GSSDSEEERA TRLAELQEQL KAVHEQLAAL SQAPVNKPKR KKEKKEKKKK BACU016169/1-722 GSSDSEEERA TRLAELQEQL KAVHEQLAAL SQAPVNKPKR KKEKKEKKKK ENSTTRP00000005012/1-722 GSSDSEEERA TRLAELQEQL KAVHEQLAAL SQAPVNKPKR KKEKKEKKKK 501 550 bmy_20020T0/1-604 DRG------- ----GSHGAG AGPGPSPGRA LTRRLPWSPS TPTPSHSRPL ENSP00000305918/1-726 KKDKEKEKEK HKVKAEEEKK AKVAPPAKQA QQKKAPAKKA NSTTTAGRQL ENSBTAP00000013992/1-722 DKD----KER HKAKAEEEKR AKAATPAKQA PQKKAPAKKA NSTSAAGRQP BACU016169/1-722 DKD----KER HKAKSEDEKK ARAAPPAKQA QQKKAPAKKA NSTTVAGRQP ENSTTRP00000005012/1-722 DKD----KER HKAKSEEDKK AKVAPPAKQA QQKKAPAKKA NSATVAGRQP 551 600 bmy_20020T0/1-604 QRCRWQGT-- ---------- -----QRR-- --------CR RRGPPWQCLQ ENSP00000305918/1-726 KKGGKQASAS YDSEEEEEGL PMSYDEKRQL SLDINRLPGE KLGRVVHIIQ ENSBTAP00000013992/1-722 KKGGKQASAS YDSEEEEEGL PMSYDEKRQL SLDINRLPGE KLGRVVHIIQ BACU016169/1-722 KKGGKQASAS YDSEEEEEGL PMSYDEKRQL SLDINRLPGE KLGRVVHIIQ ENSTTRP00000005012/1-722 KKGGKQASAS YDSEEEEEGL PMSYDEKRQL SLDINRLPGE KLGRVVHIIQ 601 650 bmy_20020T0/1-604 ARGP------ ---------- VSPTG----- ---------- SGRPWSPGAS ENSP00000305918/1-726 SREPSLRDSN PDEIEIDFET LKPTTLRELE RYVKSCLQKK QRKPFSASGK ENSBTAP00000013992/1-722 SREPSLRDSN PDEIEIDFET LKPTTLRELE RYVKSCLQKK QRKPFSTSGK BACU016169/1-722 SREPSLRDSN PDEIEIDFET LKPTTLRELE RYVKSCLQKK QRKPFSTSGK ENSTTRP00000005012/1-722 SREPSLRDSN PDEIEIDFET LKPTTLRELE RYVKSCLQKK QRKPFSTSGK 651 700 bmy_20020T0/1-604 FRSSRVWEAP AEAAALGLHE PVWLGAG--- ---------- AGSAAL--PE ENSP00000305918/1-726 KQAAKSKEEL AQEKKKELEK RLQDVSGQLS SSKKPARKEK PGSAPSGGPS ENSBTAP00000013992/1-722 KQAAKSKEEL AQEKKKELER RLQDVSGQLS NSKKPAKREK SGSTASGGPS BACU016169/1-722 KQAAKSKEEL AQEKKKELER RLQDVSGQLS NSKKPAKREK SGSEPSGGPS ENSTTRP00000005012/1-722 KQAAKSKEEL AQEKKKELER RLQDVSGQLG SSKKPAKREK SGSAPSGGPS 701 750 bmy_20020T0/1-604 RASPASASDR L--------- ------ ENSP00000305918/1-726 RLSSSSSSES GSSSSSGSSS DSSDSE ENSBTAP00000013992/1-722 RLSSSSSSES GSSSTSGSSS DSSDSE BACU016169/1-722 RLSSSSSSES GSSSSSWSSS DSSDSE ENSTTRP00000005012/1-722 RLSSSSSSES GSSSSSGSSS DSSDSE