KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:52:03 2014 Check: 00 .. Name: ENSP00000385450/1-1462 Len: 1513 Check: 7144 Weight: 1.00 Name: BACU015103/1-739 Len: 1513 Check: 1021 Weight: 1.00 Name: ENSBTAP00000013997/1-1328 Len: 1513 Check: 4348 Weight: 1.00 Name: ENSTTRP00000003904/1-1452 Len: 1513 Check: 6226 Weight: 1.00 Name: bmy_17577T0/1-1040 Len: 1513 Check: 5902 Weight: 1.00 // 1 50 ENSP00000385450/1-1462 MSKVIQKKNH WTSRVHECTV KRGPQGELGV TVLGGAEHGE FPYVGAVAAV BACU015103/1-739 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000013997/1-1328 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000003904/1-1452 MSKVIQKKNH WTSRVHEFTV KRGPQGELGV TVLGGAENGE FPYVGAVAAA bmy_17577T0/1-1040 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000385450/1-1462 EAAGLPGGGE GPRLGEGELL LEVQGVRVSG LPRYDVLGVI DSCKEAVTFK BACU015103/1-739 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000013997/1-1328 -------TTR SPREGE---- ---------- ---------- ---------- ENSTTRP00000003904/1-1452 EAAGLPGGGQ GPRLGEGELL LEVQGIRVSG LPRYDILGVI DSCKEAVTFK bmy_17577T0/1-1040 ---------- ---------- ---------- ---------- ---------- 101 150 ENSP00000385450/1-1462 AVRQGGRLNK DLRHFLNQRF QKGSPDHELQ QTIRDNLYRH AVPCTTRSPR BACU015103/1-739 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000013997/1-1328 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000003904/1-1452 AVRQGGKLNK DLRHFLNQRF QKGSPDHELQ QTIRDNLYRH AVPXXXXXXX bmy_17577T0/1-1040 ---------- ---------- ---------- ---------- ---------- 151 200 ENSP00000385450/1-1462 EGEVPGVDYN FLTVKEFLDL EQSGTLLEVG TYEGNYYGTP KPPSQPVSGK BACU015103/1-739 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000013997/1-1328 ---VPGVDYL FGNVKEFLDL EQSGTLLEVG TYEGNYYGTP KPPSQPVSGK ENSTTRP00000003904/1-1452 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXNYYGTP KPPSQPLSGK bmy_17577T0/1-1040 ---------- ---------- ---------- ---------- ---------- 201 250 ENSP00000385450/1-1462 VITTDALHSL QSGSKQSTPK RTKSYNDMQN AGIVHAENEE EDDVPEMNSS BACU015103/1-739 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000013997/1-1328 VITTDALQNL HSGSKQSTPK RTKSYNDMQN AGIVHAENEE EDDVPEMNSS ENSTTRP00000003904/1-1452 VITTDALQSL HSGSKQSTPK RTKSYNDMQN AGIVHAENEE EDDVPEMNSS bmy_17577T0/1-1040 ---------- ---------- ---------- ---------- ---------- 251 300 ENSP00000385450/1-1462 FTADSGEQEE HTLQETALPP VNSSIIAAPI TDPSQKFPQY LPLSAEDNLG BACU015103/1-739 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000013997/1-1328 FTADSGDQEE HSLQEAAHPP VNSSIIAAPI TDPSQKFPQY LPLSAEDNLG ENSTTRP00000003904/1-1452 FTADSGDQEE HSLQEATLRP VNSSIIAAPI TDPSQKFPQY LPLSAEDNLG bmy_17577T0/1-1040 ---------- ---------- ---------- ---------- ---------- 301 350 ENSP00000385450/1-1462 PLPENWEMAY TENGEVYFID HNTKTTSWLD PRCLNKQQKP LEECEDD-EG BACU015103/1-739 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000013997/1-1328 PLPENWEMAY TENGEVYFID HNTKTTSWLD PRCLNKQQKP LEECEDDEEG ENSTTRP00000003904/1-1452 PLPENWEMAY TENGEVYFID HNTKTTSWLD PRCLNKQQKP LEECEDD-EG bmy_17577T0/1-1040 ---------- ---------- ---------- ---------- ---------- 351 400 ENSP00000385450/1-1462 VHTEELDSEL ELPAGWEKIE DPVYGIYYVD HINRKTQYEN PVLEAKRKKQ BACU015103/1-739 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000013997/1-1328 IHTEELDSEL ELPAGWEKIE DPVYGIYYVD HINRKTQYEN PVLEAKRKKQ ENSTTRP00000003904/1-1452 IHTEELDSEL ELPAGWEKID DPVYGIYYVD HINRKTQYEN PVLEAKRKKQ bmy_17577T0/1-1040 ---------- ---------- ---------- ---------- ---------- 401 450 ENSP00000385450/1-1462 LEQQQQQQQQ QQQQQQQQQQ QQTEEWTEDH SALVPPVIPN HPPSNPEPAR BACU015103/1-739 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000013997/1-1328 LE-------- QQPTTATATA ARSVEWTEDH SSLVPPAIPN HPPSNPEPAR ENSTTRP00000003904/1-1452 LE-------- QQQQQQQ--- -QPEEWTEDH SSLVPPIIPN HPPSNPEQAR bmy_17577T0/1-1040 ---------- ---------- ---------- ---------- ---------- 451 500 ENSP00000385450/1-1462 EVPLQGKPFF TRNPSELKGK FIHTKLRKSS RGFGFTVVGG DEPDEFLQIK BACU015103/1-739 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000013997/1-1328 EAPLQGKPFF TRNPSELKGK FIHTKLRKSS RGFGFTVVGG DEPDEFLQIK ENSTTRP00000003904/1-1452 EAPLQGKPFF TRNPSELKGK FIHTKLRKSS RGFGFTVVGG DEPDEFLQIK bmy_17577T0/1-1040 ------KPFF TRNPSELKGK FIHTKLRKSS RGFGFTVVGG DEPDEFLQIK 501 550 ENSP00000385450/1-1462 SLVLDGPAAL DGKMETGDVI VSVNDTCVLG HTHAQVVKIF QSIPIGASVD BACU015103/1-739 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000013997/1-1328 SLVLDGPAAL DGKMETGDVI VSVNDTCVLG HTHAQVVKIF QSIPIGASVD ENSTTRP00000003904/1-1452 SLVLDGPAAL DGKMETGDVI VSVNDTCVLG HTHAQVVKIF QSIPIGASVD bmy_17577T0/1-1040 SLVLDGPAAL DGKMETGDVI VSVNDTCVLG HTHAQVVKIF QSIPIGASVD 551 600 ENSP00000385450/1-1462 LELCRGYPLP FDPDDPNTSL VTSVAILDKE PIIVNGQETY DSPASHSSKT BACU015103/1-739 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000013997/1-1328 LELCRGYPLP FDPDDPNTSL VTSVAILDKE PIIVNGQETY DSPASHSSKT ENSTTRP00000003904/1-1452 LELCRGYPLP FDPDDPNTSL VTSVAILDKE PIIVNGQETY DSPASHSSKT bmy_17577T0/1-1040 LELCRGYPLP FDPDDPNTSL VTSVAILDKE PIIVNGQETY DSPASHSSKT 601 650 ENSP00000385450/1-1462 GKVNGMKDAR PSSPADVASN SSHGYPNDTV SLASSIATQP ELITVHIVKG BACU015103/1-739 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000013997/1-1328 GKVSSMKDAR PSSPADVASN GSHGYPTDTV SLASSIATQP ELITVHIVKG ENSTTRP00000003904/1-1452 GKVNGMKDAR PSSPADVASN GSHGYPNDTV SLASSIATQP ELITVHIVKG bmy_17577T0/1-1040 GKVNGMKDAR PSSPADVASN GSHGYPNDTV SLASSIATQP ELITVHIVKG 651 700 ENSP00000385450/1-1462 PMGFGFTIAD SPGGGGQRVK QIVDSPRCRG LKEGDLIVEV NKKNVQALTH BACU015103/1-739 ---------- ---------- ---------- ---MHYLVDM FANSFEALAF ENSBTAP00000013997/1-1328 PMGFGFTIAD SPGGGGQRVK QIVDSPRCRG LKEGDLIVEV NKKNVQALTH ENSTTRP00000003904/1-1452 PMGFGFTIAD SPGGGGQRVK QIVDSPRCRG LKEGDLIVEV NKKNVQALTH bmy_17577T0/1-1040 PMGFGFTIAD SPGGGGQRVK QIVDSPRCRG LKEGDLIVEV NKKNVQALTH 701 750 ENSP00000385450/1-1462 NQVVDMLVEC PKGSEVTLLV QRGGLPVPKK SPKS------ ---------- BACU015103/1-739 RLVV------ ---------- ---------- ---------- ---------- ENSBTAP00000013997/1-1328 NQVVDMLIEC PKGSEVTLLV QRGGLPVPKK SPKS------ ---------- ENSTTRP00000003904/1-1452 NQVVDMLIEC PKGSEVTLLV QRGGLPVPKK SPKS------ ---------- bmy_17577T0/1-1040 NQVVDMLIEC PKGSEVTLLV QRGGLPVPKK SPKSGTNNNL FLPLSLASFQ 751 800 ENSP00000385450/1-1462 QPLERKDSQN SSQHSVSSHR SLHTASPSHS TQVLPEFPPA EAQAPDQTDS BACU015103/1-739 QPLERKDSQN SSQHSAASHR SLHTASPSHG TQVLPEFPPA EAPAPDQTDS ENSBTAP00000013997/1-1328 QPLERKDSQN SSQHSVASHR SLHTASPSHS TQVLPELPPA EAPAPDQTDN ENSTTRP00000003904/1-1452 QPLERKDSQN SSQHSAASHR SLHTASPGHG TQVLPEFPPA EAPAPDQTDS bmy_17577T0/1-1040 QPLERKDSQN SSQHSAASHR SLHTASPSHG TQVLPEFPPA EAPAPDQTDS 801 850 ENSP00000385450/1-1462 SGQKKPDPFK IWAQSRSMYE NR-------- ---------- ---------- BACU015103/1-739 SGQKKPDPFK IWAQSRSMYE NR-------- ---------- ---------- ENSBTAP00000013997/1-1328 SGQKKPDPFK IWAQSRSMYE NRPMSPSPAS GLSKGERERE INSTNFGECQ ENSTTRP00000003904/1-1452 SGQKKPDPFK IWAQSRSMYE NR-------- ---------- ---------- bmy_17577T0/1-1040 SGQKKPDPFK IWAQSRSMYE NRPMSPSPAS GLSKGERDKE INSTNFGECQ 851 900 ENSP00000385450/1-1462 LPDYQEQDIF LWRKETGFGF RILGGNEPGE PIYIGHIVPL GAADTDGRLR BACU015103/1-739 LPDYQEQDIF LWRKETGFGF RILGGNEPGE PIYIGHIVPL GAADTDGRLR ENSBTAP00000013997/1-1328 IPDYQEQDIF LWRKETGFGF RILGGNEPGE PIYIGHIVPL GAADTDGRLR ENSTTRP00000003904/1-1452 LPDYQEQDIF LWRKETGFGF RILGGNEPGE PIYIGHIVPL GAADTDGRLR bmy_17577T0/1-1040 IPDYQEQDIF LWRKETGFGF RILGGNEPGE PIYIGHIVPL GAADTDGRLR 901 950 ENSP00000385450/1-1462 SGDELICVDG TPVIGKSHQL VVQLMQQAAK QGHVNLTVRR KVVFAVPKTE BACU015103/1-739 SGDELICVDG TPVIGKSHQL VVQLMQQAAK QGHVNLTVRR KVVFAASKTE ENSBTAP00000013997/1-1328 SGDELICVDG TPVIGKSHQL VVQLMQQAAK QGHVNLTVRR KVVFAAPKTE ENSTTRP00000003904/1-1452 SGDELICVDG TPVIGKSHQL VVQLMQQAAK QGHVNLTVRR KVVFAASKTE bmy_17577T0/1-1040 SGDELICVDG TPVIGKSHQL VVQLMQQAAK QGHVNLTVRR KVVFAASKTE 951 1000 ENSP00000385450/1-1462 NEVPSPASSH HSSNQPASLT EEKRTPQGSQ NSLNTVSSGS GSTSGIGSGG BACU015103/1-739 NEVPSPASSH HSSNQPASLT EEKRTPQGSQ NSLNTVSSGS GSTSGIGSGG ENSBTAP00000013997/1-1328 NEVPSPASSH HSSNQPASLT EEKRTPQGSQ NSLNTVSSGS GSTSGIGSGG ENSTTRP00000003904/1-1452 NEVPSPASSH HSSNQPASLT EEKRTPQGSQ NSLNTVSSGS GSTSGIGSGG bmy_17577T0/1-1040 NEVPSPASSH HSSNQPASLT EEKRTPQGSQ NSLNTVSSGS GSTSGIGSGG 1001 1050 ENSP00000385450/1-1462 GGGS-----G VVSTVVQPYD VEIRRGENEG FGFVIVSSVS RPEAGTTFGN BACU015103/1-739 GGGS-----G VVSTVVQPYD VEIRRGENEG FGFVIVSSVS RPEAGTTF-- ENSBTAP00000013997/1-1328 GGGS-----G VVSTVVQPYD VEIRRGENEG FGFVIVSSVS RPEAGTTF-- ENSTTRP00000003904/1-1452 GGGSGVVSTG VVSTVVQPYD VEIRRGENEG FGFVIVSSVS RPEAGTTFGN bmy_17577T0/1-1040 GGGS-----G VVSTVVQPYD VEIRRGENEG FGFVIVSSVS RPEAGTTF-- 1051 1100 ENSP00000385450/1-1462 ACVAMPHKIG RIIEGSPADR CGKLKVGDRI LAVNGCSITN KSHSDIVNLI BACU015103/1-739 ---------G RIIEGSPADR CGKLKVGDRI LAVNGCSITN KSHSDIVNLI ENSBTAP00000013997/1-1328 ---------G RIIEGSPADR CGKLKVGDRI LAVNGCSITN KSHSDIVNLI ENSTTRP00000003904/1-1452 ACVAMPHKIG RIIEGSPADR CGKLKVGDRI LAVNGCSITN KSHSDIVNLI bmy_17577T0/1-1040 ---------G RIIEGSPADR CGKLKVGDRI LAVNGCSITN KSHSDIVNLI 1101 1150 ENSP00000385450/1-1462 KEAGNTVTLR IIPGDESSNA TLLTNAEKIA TITTTHTPSQ QGTQETRNTT BACU015103/1-739 KEAGNTVTLR IIPGDESSNA TLLTNAEKIA TITTTHTPSQ QGAQETRNTT ENSBTAP00000013997/1-1328 KEAGNTVTLR IIPGDESSNA TLLTNAEKIA TITTTHTPSQ QGAQETRNTT ENSTTRP00000003904/1-1452 KEAGNTVTLR IIPGDESSNA TLLTNAEKIA TITTTHTPSQ QGAQETRNTT bmy_17577T0/1-1040 KEAGNTVTLR IIPGDESSNA TLLTNAEKIA TITTTHTPSQ QGAQETRNTT 1151 1200 ENSP00000385450/1-1462 KPKQESQFEF KAPQATQEQD FYTVELERGA KGFGFSLRGG REYNMDLYVL BACU015103/1-739 KPKPESQFEF KAPQVTQEQD FYTVELERGA KGFGFSLRGG REYNMDLYVL ENSBTAP00000013997/1-1328 KPKPESQFEF KAPQATQEQD FYTVELERGA KGFGFSLRGG REYNMDLYVL ENSTTRP00000003904/1-1452 KPKPESQFEF KAPQGTQEQD FYTVELERGA KGFGFSLRGG REYNMDLYVL bmy_17577T0/1-1040 KPKPESQFEF KAPQVTQEQD FYTVELERGA KGFGFSLRGG REYNMDLYVL 1201 1250 ENSP00000385450/1-1462 RLAEDGPAER CGKMRIGDEI LEINGETTKN MKHSRAIELI KNGGRRVRLF BACU015103/1-739 RLAEDGPAER CGKMRVGDEI LEINGETTKN MKHSRAIELI KNGGRRVRLF ENSBTAP00000013997/1-1328 RLAEDGPAER CGKMKVGDEI LEINGETTKN MKHSRAIELI KNGGRRVRLF ENSTTRP00000003904/1-1452 RLAEDGPAER CGKMRXGDEI LEINGE-TKN MKHFRAIEMI KNDGRRVRLF bmy_17577T0/1-1040 RLAEDGPAER CGKMRVGDEI LEINGETTKN MKHSRAIELI KNGGRRVRLF 1251 1300 ENSP00000385450/1-1462 LKRGDGSVPE YDPSSDRHGP ATGPQGVPEV RAG-PDRRQH PSLESSYPPD BACU015103/1-739 LKRGDGSVPE YDPSSDGNGP PTGPQGVPEV RAAPPDRRQH PSLESSYPPD ENSBTAP00000013997/1-1328 LKRGDGSVPE YDPGSDGNGP PTGPQGVPEM RAGPPDRRQH PSLESSYPPD ENSTTRP00000003904/1-1452 MKRGDGSVPE YDPSSDGNGP PTGPQGVPEM RAAPPDRRQH PSLESSYPPD bmy_17577T0/1-1040 LKRGDGSVPE YDPSSDGNGP PTGPQGVPEM RAAPPDRRQH PSLESSYPPD 1301 1350 ENSP00000385450/1-1462 LHKSSPHGEK RAHARDPKGS REYSRQPNEH HTWNGTSRKP DSGACRPKDR BACU015103/1-739 LHKSSPHGEK RVHVRDPKGS REYSRQPNEH HTWNGTSRKP DSGACRPKDR ENSBTAP00000013997/1-1328 LHKSSPHGEK RAHVRDPKGS REYSRQPNEH HTWNGTSRKP DSGACRPKDR ENSTTRP00000003904/1-1452 LHKSSPHGEK RAHVRDPKGS REYSRQPNEH HTWNGTSRKP DSGACRPKDR bmy_17577T0/1-1040 LHKSSPHGEK RAHVRDPKGS REYSRQPNEH HTWNGTSRKP DSGACRPKDR 1351 1400 ENSP00000385450/1-1462 APEGRRDAQA ERAAAANGPK RRSPEKRREG TRSADNTLER REKHEKRRDV BACU015103/1-739 APEGRRDAQP ER-MVTNGPK RRSPEKRREG TRSADNTLER REKQEKRREV ENSBTAP00000013997/1-1328 APEGRRDAQP ER-MVTNGPK RRSPEKRREG TRSADNTLER REKQEKRKEV ENSTTRP00000003904/1-1452 APEGRRDAQP ER-MVTNGPK RRPPEKRREG TRSADNTLER REKQEKR-EA bmy_17577T0/1-1040 APEGRRDAQP ER-MVTNGPK RRSPEKRREG TRSADNTLER REKQEKRREV 1401 1450 ENSP00000385450/1-1462 SPERRRERSP TRRRDGSPSR RRRSLERLLE QRRSPERRRG GSPERRAKST BACU015103/1-739 SPERRRERSP TRRRDGSPGR RRRSLERLLD QRRSPERKRG SSPERRAKST ENSBTAP00000013997/1-1328 SPERRRERSP TRRRDGSPGR RRRSLERLLD QRRSPERKRG SSPERRAKST ENSTTRP00000003904/1-1452 SPERRRERSP TRRRDGSPGR RRRSLERLLY QKRSPERKRG SSPERRAKST bmy_17577T0/1-1040 SPERRRERSP TRRRDGSPGR RRRSLERLLD QRRSPERKRG SSPERRAKST 1451 1500 ENSP00000385450/1-1462 DRRRARSPER RRERSLDKRN REDRASHRER EEANLKQDAG RSSRHPPEQR BACU015103/1-739 DRRRTRSPER RRERSLEKRS KEDKGSHRER DETSLKQDAG RSYRHPPEQR ENSBTAP00000013997/1-1328 DRRRTKSPER RRERSLEKRN KEDRGSHRER DETSLRQDTG RSSRHPPEQR ENSTTRP00000003904/1-1452 DRRRTRSPE- QRERSLEKRS KEDKGGHRER DETSLKQDAG RSSRHPPEQR bmy_17577T0/1-1040 DRRRTRSPER RRERSLEKRS KEDKGSHRER DETSLKQDAG RSSRHPPEQR 1501 1550 ENSP00000385450/1-1462 RRPYKECSTD LSI BACU015103/1-739 RRPYKECSTD LSI ENSBTAP00000013997/1-1328 RRPYKECSTD LSI ENSTTRP00000003904/1-1452 RRPYKECSTD LSI bmy_17577T0/1-1040 RRPYKECSTD LSI