KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:52:05 2014 Check: 00 .. Name: ENSP00000350036/1-1235 Len: 1241 Check: 7749 Weight: 1.00 Name: ENSBTAP00000014005/1-1235 Len: 1241 Check: 5020 Weight: 1.00 Name: ENSTTRP00000000912/1-1197 Len: 1241 Check: 9606 Weight: 1.00 Name: BACU013471/1-1100 Len: 1241 Check: 5761 Weight: 1.00 Name: bmy_04240T0/1-789 Len: 1241 Check: 7527 Weight: 1.00 // 1 50 ENSP00000350036/1-1235 MAHLELLLVE NFKSWRGRQV IGPFRRFTCI IGPNGSGKSN VMDALSFVMG ENSBTAP00000014005/1-1235 MSRLEVLFVE NFKSWRGRQV IGPFKRFTCI IGPNGSGKSN VMDALSFVMG ENSTTRP00000000912/1-1197 ---------- ---------- ---------- -------KSN VMDALSFVMG BACU013471/1-1100 MGHLELLFVE NFKSWRGRQV IGPFRRFTCI IGPNGSGKSN VMDALSFVMG bmy_04240T0/1-789 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000350036/1-1235 EKIANLRVKN IQELIHGAHI GKPISSSASV KIIYVEESGE EKTFARIIRG ENSBTAP00000014005/1-1235 EKIANLRVKN IQELIHGAHI GKPVSSSASV KIVYLEESGE EKTFARTIRG ENSTTRP00000000912/1-1197 EKIANLRVKT IQELIHGAHI GKPVSSSASV KIVYVEESGE EKTFARTIRG BACU013471/1-1100 EKIANLRVKN IQELIHGAHI GKPVSSSATV KMVYVEESGE EKTFVRTIRG bmy_04240T0/1-789 ---------- ---------- ---------- ---------- ---------- 101 150 ENSP00000350036/1-1235 GCSEFRFNDN LVSRSVYIAE LEKIGIIVKA QNCLVFQGTV ESISVKKPKE ENSBTAP00000014005/1-1235 GCSEYSFNDN PMSRSAYITE LEKIGIIVKA RNCLVFQGTV ESISMKKPKE ENSTTRP00000000912/1-1197 GCSEYCFNDS PVSRSAYITE LEKIGIIVKA RNCLVFQGTV ESISLKKPKE BACU013471/1-1100 GCSEYYFDDS PVSRSAYITE LEKIGIIVKA QNCLVFQGTV ESISVKKPKE bmy_04240T0/1-789 ---------- ---------- ---------- ---------- ---------- 151 200 ENSP00000350036/1-1235 RTQFFEEIST SGELIGEYEE KKRKLQKAEE DAQFNFNKKK NIAAERRQAK ENSBTAP00000014005/1-1235 RTQFFEEIST SGELIGEYEE KKRKLHKAEE DAQFNFNKKK NVAAERKHAK ENSTTRP00000000912/1-1197 RTQFFEEIST SGELIGEYEE KKRKLQKAEE DAQFNFNKKK NVAAERKHAK BACU013471/1-1100 RTQFFEEIST SRALIGEYEE KKRKLQKAEE DAQFNFNKKK NVAAERKHAK bmy_04240T0/1-789 ---------- ---------- ---------- ---------- ---------- 201 250 ENSP00000350036/1-1235 LEKEEAERYQ SLLEELKMNK IQLQLFQLYH NEKKIHLLNT KLEHVNRDLS ENSBTAP00000014005/1-1235 LEKEEADRYQ NLLEELKINK IQLQLFRLYH NEKKINFLYT ELERVNKNLS ENSTTRP00000000912/1-1197 LEKEEAERYQ SLLEELKKSK IQLQLFQLYH NEKKISFLNS ELERVNKDLS BACU013471/1-1100 LEKEEAERYQ SLLEELKINK IQLQLFQLYH NEKKISFLNS ELERVNKDLS bmy_04240T0/1-789 -------MYA VI-------- ---------- ---------- ---------- 251 300 ENSP00000350036/1-1235 VKRESLSHHE NIVKARKKEH GMLTRQLQQT EKELKSVETL LNQKRPQYIK ENSBTAP00000014005/1-1235 VTRESLSHHE NIVKAKKKEH GMLSRQLQQT QKELKSLEAL LNQKRPQYIK ENSTTRP00000000912/1-1197 VTKESLSSHE NTVKAKKKEH GMLSRQLQQT EKELKSLEAL LNQKRPQYIK BACU013471/1-1100 VTKESLSRHE NIVKAKKKEH GMLSRQLQQT EKELKSLEAL LNQKKPQYIK bmy_04240T0/1-789 ---------- ---------- ---------- ---------- ---------- 301 350 ENSP00000350036/1-1235 AKENTSHHLK KLDVAKKSIK DSEKQCSKQE DDIKALETEL ADLDAAWRSF ENSBTAP00000014005/1-1235 AKENTSHHLK KLDMAKKSIK DSEKQCSKQE DDIKALETEL ADLDGAWRSF ENSTTRP00000000912/1-1197 AKENTSHHLK KLDVAKKSIK DSEKQCSKQE DDIKALETEL VDLDGAWRSF BACU013471/1-1100 AKENTSHHLK KLDAAKKSIK DSEKQRSKQE DDIKALETEL VDLDGAWRSF bmy_04240T0/1-789 ---------- ---------- ---------- ---------- ---------- 351 400 ENSP00000350036/1-1235 EKQIEEEILH KKRDIELEAS QLDRYKELKE QVRKKVATMT QQLEKLQWEQ ENSBTAP00000014005/1-1235 EKQIEEEMLH KGRDIELEAG QLVQYKELKE QVRKKVAIMT QQLEKLQWEQ ENSTTRP00000000912/1-1197 EKQIEEEILR KGRDIELEAS QLDQYKELKE QVRKKVAIMT QQLEKLQWEQ BACU013471/1-1100 EKQIEEEILH KGRDIELEAS ---------- ---------- ---------- bmy_04240T0/1-789 ---------- ---------- ---------- ---------- ---------- 401 450 ENSP00000350036/1-1235 KTDEERLAFE KRRHGEVQGN LKQIKEQIED HKKRIEKLEE YTKTCMDCLK ENSBTAP00000014005/1-1235 RSDEERWAFE KRRHGEVQEN IKQIKEQIED HKKRIEKLEE YTKTCTNCLK ENSTTRP00000000912/1-1197 KADEERLAFE KRRHGEAQGN LKQIKEQIED HKKRIEKLEE YIKTCMNFLK BACU013471/1-1100 ---------- -------QEN LKHIKEQIED HKKRIEKLEE YIKTCMNCLK bmy_04240T0/1-789 ---------- --------GN LKQIKEQIED HKKRIEKLEE YIKTCMNCLK 451 500 ENSP00000350036/1-1235 EKKQQEETLV DEIEKTKSRM SEFNEELNLI RSELQNAGID THEGKRQQKR ENSBTAP00000014005/1-1235 EKKEQEENLV NEIEKTKSRM SEVNEELNLI RSELQNAGID THEGKRQQKR ENSTTRP00000000912/1-1197 EKKQQEETLV DEIEKTKSRM SEVNEELNLI RSELQNAGID NHEGKRQQKR BACU013471/1-1100 EKKQQEETLV DEIEKTKSRM SEVNEELNLI RSELQNAGID THEGKRQQKR bmy_04240T0/1-789 EKKQQEETLV DEIEKTKSRM SEVNEELNLI RSELQNAGID THEGKRQQKR 501 550 ENSP00000350036/1-1235 AEVLEHLKRL YPDSVFGRLF DLCHPIHKKY QLAVTKVFGR FITAIVVASE ENSBTAP00000014005/1-1235 AEILEHLKRL YPDSVFGRLL DLCHPIHKKY QLAVTKLFGR YMVAIVVASE ENSTTRP00000000912/1-1197 AEVLEHLKRL HPDSVFGRLL DLCHPIHKKY QLAVTKLLGR YMFAIVVASE BACU013471/1-1100 AEVLEHLKRL YPDSVFGRLL DLCHPIHKKY QLAVTKLFGR YLVAVVVASE bmy_04240T0/1-789 AEVLEHLKRL YPDSVFGRLL DLCHPIHKKY QLAVTKLFGR YLVAIVVASE 551 600 ENSP00000350036/1-1235 KVAKDCIRFL KEERAEPETF LALDYLDIKP INERLRELKG CKMVIDVIKT ENSBTAP00000014005/1-1235 KVAKDCIRFL KEERAEPETF LALDYLDIKP INERLREIKG CKMMIDVIKT ENSTTRP00000000912/1-1197 KVAKDCIRFL KEERAEPETF LALDYLDIKP INERLREIKG CKMAIDVIKT BACU013471/1-1100 KVAKDCIRFL KEERAEPETF LALDYLDIKP INERLREIKG CKMVIDVIKT bmy_04240T0/1-789 KVAKDCIRFL KEERAEPETF LALDYLDIKP INERLREIKG CKMVIDVIKT 601 650 ENSP00000350036/1-1235 QFPQLKKVIQ FVCGNGLVCE TMEEARHIAL SGPERQKTVA LDGTLFLKSG ENSBTAP00000014005/1-1235 QFPQLKKVIQ FVCGNGLVCE TLEEARHIAF AGPERRKTVA LDGTLFLKSG ENSTTRP00000000912/1-1197 QFPQLKKVIQ FVCGNGLVCE TVEEARHIAF NGPERRKTVA LDGTLFLKSG BACU013471/1-1100 QFPQLKKVIQ FVCGNGLVCE TVEEARHIAF NGPERR---- ---------- bmy_04240T0/1-789 QFPQLKKVIQ FVCGNGLVCE TVEEARHIAF NGPERRKTVA LDGTLFLKSG 651 700 ENSP00000350036/1-1235 VISGGSSDLK YKARCWDEKE LKNLRDRRSQ KIQELKGLMK TLRKETDLKQ ENSBTAP00000014005/1-1235 VISGGSSDLK SKARCWDEKE LKNLRDRRTQ LIQELKDLMK IVRKEADLKQ ENSTTRP00000000912/1-1197 VISGGSSDLK YKARCWDEKE LKNLRDRRTQ LIQELKDLMK TLRKEADLKQ BACU013471/1-1100 ---------- ---------- ---------- -----KDLMK TLRKEADLKQ bmy_04240T0/1-789 VISGGSSDLK YKARCWDEKE LKNLRDRRTQ LIQELKDLMK TLRKEADLKQ 701 750 ENSP00000350036/1-1235 IQTLIQGTQT RLKYSQNELE MIKKKHLVAF YQEQSQLQSE LLNIESQCIM ENSBTAP00000014005/1-1235 IQALIQGTTT RLKYAQSELE IIKKKHLAAF YREQSQLQSE LLNIESQCAM ENSTTRP00000000912/1-1197 IQTLVQGTHT RLKYSQSELE IIKKKHLAAF YQEQSQLQSE LLNIESQCAM BACU013471/1-1100 IQTLVQGTHT RLKYSQSELE MIKKKHLAAF YQ-------- ---------- bmy_04240T0/1-789 IQTLVQGTHT RLKYSQSELE MIKKKHLAAF YQEQSQLQSE LLNIESQCTM 751 800 ENSP00000350036/1-1235 LSEGIKERQR RIKEFQEKID KVEDDIFQHF CEEIGVENIR EFENKHVKRQ ENSBTAP00000014005/1-1235 LSEGIKERQQ RIKEFQRKID KVEDDIFQHF CEEIGVENIR EFENKHIKQQ ENSTTRP00000000912/1-1197 LSEGIKQRQR RIEEFEGKIH KVEDDIFQHF CEEIGVENIR EYENRHVKQQ BACU013471/1-1100 ---------- ---------- -VEDDIFQHF CEKIGVENIR EFENKHVKQQ bmy_04240T0/1-789 LSEGIKERQQ RIEEFQGKIH KVEDDIFQHF CEEIGVENIR EFENKHVKQQ 801 850 ENSP00000350036/1-1235 QEIDQKRLEF EKQKTRLNVQ LEYSRSHLKK KLNKINTLKE TIQKGSEDID ENSBTAP00000014005/1-1235 QEADQKRLEF EKQKTRLNIQ LEYSRNHLKK KLNKINTLKE AIEKGREDTD ENSTTRP00000000912/1-1197 QEIDQKRY-F YKMLTRLNVQ LEYSRNQLKK KLNKINTLKE TIQKGREDID BACU013471/1-1100 QEIDQKRLEF EKQKTRLNAQ LEYSRNHLKK KLNKINTLKE TIQKGREDIN bmy_04240T0/1-789 QEIDQKRLEF EKQKTRLNVQ LEYSRSHLKK KLNKINTLKE TIQKGREDID 851 900 ENSP00000350036/1-1235 HLKKAEENCL QTVNELMAKQ QQLKDIRVTQ NSSAEKVQTQ IEEERKKFLA ENSBTAP00000014005/1-1235 HLKKVEENCL KIVDELMEKQ QQLKDEFVTQ NTNVEKVQAQ IEEERKKFLA ENSTTRP00000000912/1-1197 NLKKAEENCL KIVDELMEKR QQLKDTVVTQ ITNTEKVQAQ IEEERKKFLA BACU013471/1-1100 NLKKAEENCL KVVDELMKKR QQLKDIFVTQ NTNTEKVQAQ IEEERKKFLA bmy_04240T0/1-789 NLKKAEENCM KIMDELMEKR QQLKDIYVTQ NTNTERVQAQ TEEERKTFLA 901 950 ENSP00000350036/1-1235 VDREVGKLQK EVVSIQTSLE QKRLEKHNLL LDCKVQDIEI ILLSGSLDDI ENSBTAP00000014005/1-1235 IDREVGKWQK EVVILQSSLE QNRLEKHNML LDCKVQDIEI VLLLGSLDDI ENSTTRP00000000912/1-1197 VDREVGKWQK KVVILQTSLE QKRLEKHNML LDCKVQDIEI ILLLGSLDDI BACU013471/1-1100 VDREVGKRQK EVVMLQTSLE QKRLEKHNML LDCKVQDIEI ILLSGSLDDI bmy_04240T0/1-789 VDREVGKWQK EVVMLQTSLE QKRLEKHNML LDCKVQDIEI ILLSGSLDDI 951 1000 ENSP00000350036/1-1235 IEVE------ MGTEAESTQA TIDIYEKEEA FEIDYSSLKE DLKALQSDQE ENSBTAP00000014005/1-1235 IEVEEGGKAS SGTEAEGTQA TTDIYEKEAA IEVDYSSLRE DLKALQSDKE ENSTTRP00000000912/1-1197 IEVE------ LGPEAESTQA TMDIYEKEAA IEIDYSSLRE DLKALQSDKE BACU013471/1-1100 IEVE------ LGPEAESTQA TMDIYEKEEA IEVDYSSLRE DLKALLPDKE bmy_04240T0/1-789 IEVE------ ---------- ---------- ---------- ---ALQSDKE 1001 1050 ENSP00000350036/1-1235 IEAHLRLLLQ QVASQEDILL KTAAPNLRAL ENLKTVRDKF QESTDAFEAS ENSBTAP00000014005/1-1235 IEAQLRLLLQ QVASQEDILL KTAAPNLRAV ENLKTVRDKF QESIDAFEAS ENSTTRP00000000912/1-1197 IEAHLRLLRQ QVASQEDVLL RTAAPNLRAP ENLKTVRDKF QEYTDAFEAS BACU013471/1-1100 VEAHLRLLRQ QVASQEDVLL RTAAPNLRAP ENLKTVRDKF QESTDAFEAS bmy_04240T0/1-789 IEAHLRLLRQ QVASQEDVLL RTAAPNLRAP EKLKTVRDKF QESTDAFEAS 1051 1100 ENSP00000350036/1-1235 RKEARLCRQE FEQVKKRRYD LFTQCFEHVS ISIDQIYKKL CRNNSAQAFL ENSBTAP00000014005/1-1235 RKEARICRQE FEQVKKRRYD LFNQCFEHIS ISIDQIYKKL CRNNSAQAFL ENSTTRP00000000912/1-1197 RKEARIRRQE FEQVKKRRYN LFSQCFEHVS VAIDQIYKKL CRNNSAQAFL BACU013471/1-1100 RKEARIRRQE FEQVKKRRYD IFSQCFEHIS VAIDQIYKKL CRNDSAQAFL bmy_04240T0/1-789 RKEARIRRQE FEQVKKRRYD IFSRCFEHIS VAIDQIYKKL CRNNSAQAFL 1101 1150 ENSP00000350036/1-1235 SPENPEEPYL EGISYNCVAP GKRFMPMDNL SGGEKCVAAL ALLFAVHSFR ENSBTAP00000014005/1-1235 SPENPEEPYL EGISYNCVAP GKRFMPMDNL SGGEKCVAAL ALLFAVHSFR ENSTTRP00000000912/1-1197 SPENPEEPYL EGISYNCVAP GKRFMPMDNL SGGEKCVAAL ALLFAVHSFR BACU013471/1-1100 SPENPEEPYL EGISYNCVAP GKRFMPMDNL SGGEKCVAAL ALLFAVHSFR bmy_04240T0/1-789 SPENPEEPYL EGISYNCVAP GKRFMPMDNL SGGEKCVAAL ALLFAVHSFR 1151 1200 ENSP00000350036/1-1235 PAPFFVLDEV DAALDNTNIG KVSSYIKEQT QDQFQMIVIS LKEEFYSRAD ENSBTAP00000014005/1-1235 PAPFFVLDEV DAALDNTNIG KVSSYIKEQT QEQFQMIIIS LKEEFYSKAD ENSTTRP00000000912/1-1197 PAPFFVLDEV DAALDNTNIG KVSSYIKEQT QDQFQMIIIS LKEELYCKAD BACU013471/1-1100 PAPFFVLDEV DAALDNTNIG KVSSYIKEQT QEQFQMIIIS LKEELYSKAD bmy_04240T0/1-789 PAPFFVLDEV DAALDNTNIG KVSSYIKEQT QEQVQMIIIS LKEELYSKAD 1201 1250 ENSP00000350036/1-1235 ALIGIYPEYD DCMFSRVLTL DLSQYPDTEG QESSKRHGES R ENSBTAP00000014005/1-1235 ALIGIYPEYD DCMFSRVLTL DLSQYPDTEG RESSR----- - ENSTTRP00000000912/1-1197 ALIGIYPEHD DCMFSRVLTL DLSQYPDTED KESSRRHAEC P BACU013471/1-1100 ALIGIYPEHD DCMFSRVLTL DLSQYPDTED RESSRRQQEA R bmy_04240T0/1-789 ALIGIYPEHD DCMFSRVLTL DLSQYPDTED RESSRRQQEA R