KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:52:07 2014 Check: 00 .. Name: ENSP00000342181/1-671 Len: 1970 Check: 9967 Weight: 1.00 Name: ENSBTAP00000014015/1-671 Len: 1970 Check: 910 Weight: 1.00 Name: ENSTTRP00000010377/1-634 Len: 1970 Check: 1377 Weight: 1.00 Name: BACU000663/1-1924 Len: 1970 Check: 3466 Weight: 1.00 Name: bmy_15132T0/1-658 Len: 1970 Check: 2809 Weight: 1.00 // 1 50 ENSP00000342181/1-671 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000014015/1-671 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000010377/1-634 ---------- ---------- ---------- ---------- ---------- BACU000663/1-1924 MESGAGKHWT EEEVKALLSI WAEKNIRKQL YGTLRNKGIF IYIAKRLQAL bmy_15132T0/1-658 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000342181/1-671 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000014015/1-671 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000010377/1-634 ---------- ---------- ---------- ---------- ---------- BACU000663/1-1924 GVYRDWKQCR AKYKNLKYEY RTVKYAHNSG DSSKTMKFFH DLDAILQYEP bmy_15132T0/1-658 ---------- ---------- ---------- ---------- ---------- 101 150 ENSP00000342181/1-671 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000014015/1-671 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000010377/1-634 ---------- ---------- ---------- ---------- ---------- BACU000663/1-1924 ATQLTEEDAN DRCLATLSQS TAPEITEGKM SVTSVDKEDI PGNPLLLVSH bmy_15132T0/1-658 ---------- ---------- ---------- ---------- ---------- 151 200 ENSP00000342181/1-671 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000014015/1-671 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000010377/1-634 ---------- ---------- ---------- ---------- ---------- BACU000663/1-1924 VRPMELGNST PIMEPPNNPT FIPAVANEGG KHWTVPEVRA LIGIWSDKGI bmy_15132T0/1-658 ---------- ---------- ---------- ---------- ---------- 201 250 ENSP00000342181/1-671 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000014015/1-671 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000010377/1-634 ---------- ---------- ---------- ---------- ---------- BACU000663/1-1924 QQQLEGTVRN KRIFEQIAAE LQKLGIERDW KQCRTKYKNL KHEYKIVRMA bmy_15132T0/1-658 ---------- ---------- ---------- ---------- ---------- 251 300 ENSP00000342181/1-671 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000014015/1-671 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000010377/1-634 ---------- ---------- ---------- ---------- ---------- BACU000663/1-1924 QDLGMTKSMK FFTELDAILG HSKTENSQAQ ESHDGKQATG CANVKTEEDQ bmy_15132T0/1-658 ---------- ---------- ---------- ---------- ---------- 301 350 ENSP00000342181/1-671 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000014015/1-671 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000010377/1-634 ---------- ---------- ---------- ---------- ---------- BACU000663/1-1924 TVIAGDAAED DLVSNMSEDL RETDMRQSPG TGNHIPLEDA KSHLQIITVS bmy_15132T0/1-658 ---------- ---------- ---------- ---------- ---------- 351 400 ENSP00000342181/1-671 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000014015/1-671 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000010377/1-634 ---------- ---------- ---------- ---------- ---------- BACU000663/1-1924 DTEAGKHWCD NEVRALINIW SDEKIKQMLE GATRNKEIFE EIARRLMQFG bmy_15132T0/1-658 ---------- ---------- ---------- ---------- ---------- 401 450 ENSP00000342181/1-671 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000014015/1-671 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000010377/1-634 ---------- ---------- ---------- ---------- ---------- BACU000663/1-1924 IDRDWKQCRT KYKNLKHEYR VLQKKNGNPQ GKMRFYEEVD GLLGQPSLRT bmy_15132T0/1-658 ---------- ---------- ---------- ---------- ---------- 451 500 ENSP00000342181/1-671 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000014015/1-671 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000010377/1-634 ---------- ---------- ---------- ---------- ---------- BACU000663/1-1924 AKWKHELFES HTKNPRTLSI KRKAHEDEPA AVSLKKTAPE ITANQFPQRT bmy_15132T0/1-658 ---------- ---------- ---------- ---------- ---------- 501 550 ENSP00000342181/1-671 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000014015/1-671 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000010377/1-634 ---------- ---------- ---------- ---------- ---------- BACU000663/1-1924 TESKDCTECF CSQETPYVTQ LHQSPASLPR AAAASRPLRI MATAEVLKIG bmy_15132T0/1-658 ---------- ---------- ---------- ---------- ---------- 551 600 ENSP00000342181/1-671 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000014015/1-671 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000010377/1-634 ---------- ---------- ---------- ---------- ---------- BACU000663/1-1924 KKLYEGKTKE VYELLDSPGK VLLQSKDQIT AGNAARKNHL EGKAAISNKI bmy_15132T0/1-658 ---------- ---------- ---------- ---------- ---------- 601 650 ENSP00000342181/1-671 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000014015/1-671 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000010377/1-634 ---------- ---------- ---------- ---------- ---------- BACU000663/1-1924 TSCIFQLLQE AGIKTAFTRK CGDTAFIAPK CEMIPIEWVC RRIATGSFLK bmy_15132T0/1-658 ---------- ---------- ---------- ---------- ---------- 651 700 ENSP00000342181/1-671 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000014015/1-671 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000010377/1-634 ---------- ---------- ---------- ---------- ---------- BACU000663/1-1924 RNPGVKEGYK FYPPKVEMFF KDDANNDPQW SEEQLIAASF CFAGLVIGQT bmy_15132T0/1-658 ---------- ---------- ---------- ---------- ---------- 701 750 ENSP00000342181/1-671 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000014015/1-671 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000010377/1-634 ---------- ---------- ---------- ---------- ---------- BACU000663/1-1924 EVDIMSHATQ AIFEILEKSW LPQNCTLVDM KIEFGVDVTT KEIVLADVID bmy_15132T0/1-658 ---------- ---------- ---------- ---------- ---------- 751 800 ENSP00000342181/1-671 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000014015/1-671 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000010377/1-634 ---------- ---------- ---------- ---------- ---------- BACU000663/1-1924 NDSWRLWPSG DRSQQKDKQS YRDLKEVTPE GLQMVKKNFE WVAERVELLL bmy_15132T0/1-658 ---------- ---------- ---------- ---------- ---------- 801 850 ENSP00000342181/1-671 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000014015/1-671 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000010377/1-634 ---------- ---------- ---------- ---------- ---------- BACU000663/1-1924 KPESQGRVVV LMGSTSDLSH CEKIKKTCGN FGIPCELRVT SAHKGPDETL bmy_15132T0/1-658 ---------- ---------- ---------- ---------- ---------- 851 900 ENSP00000342181/1-671 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000014015/1-671 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000010377/1-634 ---------- ---------- ---------- ---------- ---------- BACU000663/1-1924 RIKAEYEGDG IPTVFVAVAG RSNGLGPVMS GNTAYPVISC PPLTPDWGAQ bmy_15132T0/1-658 ---------- ---------- ---------- ---------- ---------- 901 950 ENSP00000342181/1-671 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000014015/1-671 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000010377/1-634 ---------- ---------- ---------- ---------- ---------- BACU000663/1-1924 DVWSSLRLPS GTRVKTTVFD ANSGIKTLPT AKRLATTCFL LRLATSEILF bmy_15132T0/1-658 ---------- ---------- ---------- ---------- ---------- 951 1000 ENSP00000342181/1-671 ---------- -MASGGSGGV SVPALWSEVN RYGQNGDFTR ALKTVNKILQ ENSBTAP00000014015/1-671 ---------- -MASGGSGGV SVPALWSEVN RYGQNGDFTR ALKTVNKILQ ENSTTRP00000010377/1-634 ---------- ---------- ---------- ---------- --------LQ BACU000663/1-1924 RGKRSSRVSA KMASGGSGGV SVPVLWSEVN RYGQNGDFTR ALKTVNKILQ bmy_15132T0/1-658 ---------- -MASGGSGGV SVPALWSEVN RYGQNGDFTR ALKTVNKILQ 1001 1050 ENSP00000342181/1-671 INKDDVTALH CKVVCLIQNG SFKEALNVIN THTKVLANNS LSFEKAYCEY ENSBTAP00000014015/1-671 INKDDVTALH CKVVCLIQNG SFKEALNVIN THTKVFANNS LSFEKAYCEY ENSTTRP00000010377/1-634 INKDDVTALH CKVVCLIQNG SFKEALNVIN THTKVFANNS LSFEKAYCEY BACU000663/1-1924 INKDDVTALH CKVVCLIQNG SFKEALNVIN THTKVFANNS LSFEKAYCEY bmy_15132T0/1-658 INKDDVTALH CKVVCLIQNG SFKEALNVIN THTKVFA--- ---------- 1051 1100 ENSP00000342181/1-671 RLNRIENALK TIESANQQTD KLKELYGQVL YRLERYDECL AVYRDLVRNS ENSBTAP00000014015/1-671 RLNRIENALK TIESANQQTD KLKELYGQVL YRLERYDECL AVYRDLVRNS ENSTTRP00000010377/1-634 RLNRIENALK TIESANQQTD KLKELYGQVL YRLERYDECL AVYRDLVRNS BACU000663/1-1924 RLNRIENALK TIESANQQTD KLKELYGQVL YRLERYDECL AVYRDLVRNS bmy_15132T0/1-658 KLNRIENALK TIESANQQTD KLKELYGQVL YRLERYDECL AVYRDLVRNS 1101 1150 ENSP00000342181/1-671 QDDYDEERKT NLSAVVAAQS NWEKVVPENL GLQEGTHELC YNTACALIGQ ENSBTAP00000014015/1-671 QDDYDEERKT NLSAVVAAQS NWEKVVPENL GLQEGTHELC YNTACALIGQ ENSTTRP00000010377/1-634 QDDYDEERKT NLSAVVAAQS NWEKVVPENL SLQEGTHELC YNAACALIGQ BACU000663/1-1924 QDDYDEERKT NLSAVVAAQS NWEKVVPENL GLQEGTHELC YNAACALIGQ bmy_15132T0/1-658 QDDYDEERKT NLSAVVAAQS NWEKVVPENL GLQEGTHELC YNAACALIGQ 1151 1200 ENSP00000342181/1-671 GQLNQAMKIL QKAEDLCRRS LSEDTDGTEE DPQAELAIIH GQMAYILQLQ ENSBTAP00000014015/1-671 GQLSQAMRIL QKAEDLCRRS FSEDSDGTEE DPQAELAIIH GQMAYILQLQ ENSTTRP00000010377/1-634 GQLNQAMKIL QKAEDLCRRS LSEDSDGTEE DPQAELAIIH GQMAYIMQLQ BACU000663/1-1924 GQLNQAMKIL QKAEDLCRRS LSEDSDGTEE DPQAELAIIH GQMAYILQLQ bmy_15132T0/1-658 GQLNQAMKIL QKAEDLCXRS LSEDSDGTEE DPQAELTIIH GQMAYILQLQ 1201 1250 ENSP00000342181/1-671 GRTEEALQLY NQIIKLKPTD VGLLAVIANN IITINKDQNV FDSKKKVKLT ENSBTAP00000014015/1-671 GRTEEALQLY NQIIKLKPTD VALLAVIANN IITINKDQNV FDSKKKVKLT ENSTTRP00000010377/1-634 GHTEEALQLY NQIIKLKPTD VALLAVIANN IITINKDQNV FDSKKKVKLT BACU000663/1-1924 GRTEEALQLY NQIIKLKPTD VALLAVIANN IITINKDQNV FDSKKKVKLT bmy_15132T0/1-658 GRTEEALQLY NQIIKLKPTD VALLAVIANN IITINKDQNV FDSKKKVKLT 1251 1300 ENSP00000342181/1-671 NAEGVEFKLS KKQLQAIEFN KALLAMYTNQ AEQCRKISAS LQSQSPEHLL ENSBTAP00000014015/1-671 NAEGVEFKLS KKQLQAIEFN KALLAMYTNQ AEQCRKISAS LQSQSPERLL ENSTTRP00000010377/1-634 NAEGVEFKLS KKQLQAIEFN KALLAMYTNQ AEQCRKISAS LQSQSPEHLL BACU000663/1-1924 NAEGVEFKLS KKQLQAIEFN KALLAMYTNQ AEQCRKTSAS LQSQSPEHLL bmy_15132T0/1-658 NAEGVEFKLS KKQLQAIEFN KALLAMYTNQ AEQCRKISAS LQSQSPEHLL 1301 1350 ENSP00000342181/1-671 PVLIQAAQLC REKQHTKAIE LLQEFSDQHP ENAAEIKLTM AQLKISQGNI ENSBTAP00000014015/1-671 PVLIQAAQLC REKQHTKAIE LLQDYSDQHP ENAAEIKLTM AQLKISQGNI ENSTTRP00000010377/1-634 PVLIQAAQLC REKQHTKAIE LLQGIADQHP ENAAEIKLTM AQLKISQGNI BACU000663/1-1924 PVLIQAAQLC REKQHTKAIE LLQ------- ---------- ---------- bmy_15132T0/1-658 PVLIQAAQLC REKQHTKAIE LLQEFADQHP ENAAEIKLTM AQLKISQGNI 1351 1400 ENSP00000342181/1-671 SKACLILRSI EELKHKPGMV SALVTMYSHE EDIDSAIEVF TQAIQWYQNH ENSBTAP00000014015/1-671 SKACLILRSI DELKHKPGMV SALVTMYSHE EDIDSAIEVF TQAIQWYQNH ENSTTRP00000010377/1-634 SKACLILRSI EQLKHKPGMV SALVTMYSHE EDIDSAIEVF TQAIQWYQNR BACU000663/1-1924 ---------- ---------V SALVTMYSHE EDIDSAIEVF TQAIQWYQNH bmy_15132T0/1-658 SKACLILRSI EELKHKPGMV SALVTMYSHE EDIDSAIEVF TQAIQWYQNH 1401 1450 ENSP00000342181/1-671 QPKSPAHLSL IREAANFKLK YGRKKEAISD LQQLWKQNPK DIHTLAQLIS ENSBTAP00000014015/1-671 QPKSTAHLSL IREAANFKLK YGRKKEAISD LEQLWKQNPK DIHTLAQLIS ENSTTRP00000010377/1-634 QPKSPAHLSL IREAANFKLK YGRKKEAISD LEQLWKQNPK DIHTLAQLIS BACU000663/1-1924 QPKSPAHLSL IREAANFKLK YGRKKEAISD LEQLWKQNPK DIHTLAQLIS bmy_15132T0/1-658 QPKSPAHLSL IREAANFKLK YGRKKEAISD LEQLWKQNPK DIHTLAQLIS 1451 1500 ENSP00000342181/1-671 AYSLVDPEKA KALSKHLPSS DSMSLKVDVE ALENSAGATY IRKKGGKVTG ENSBTAP00000014015/1-671 AYSLVDPEKA KALSKHLPSS DSMSLKVDVE ALENSPGATY VRKKGGKVTG ENSTTRP00000010377/1-634 AYSLVDPEKA KALSKHLPSS DSMSLKVDVE ALENSPGATY IRKKGGKVAG BACU000663/1-1924 AYSLVDPEKA KALSKHLPSS DSMSLKVDVE ALENSPGATY IRKKGGKVAG bmy_15132T0/1-658 AYSLVDPEKA KALSKHLPSS DSMSLKVDVE ALENSPGATY IRKKGGKVAG 1501 1550 ENSP00000342181/1-671 DSQPKEQGQG DLKKKKKKKK GKLPKNYDPK VTPDPERWLP MRERSYYRGR ENSBTAP00000014015/1-671 DNQPKEQGQG DLKKKKKKKK GKLPKNYDPK VTPDPERWLP MRERSYYRGR ENSTTRP00000010377/1-634 DSQPKEQGQG DLKKKKKKKK GKLPKNYDPK VTPDPERWLP MRERSYYRGR BACU000663/1-1924 DSQPKEQGQG DLKKKKKKKK GKLPKNYDPK VTPDPERWLP MRERSYYRGR bmy_15132T0/1-658 DSQPKEQGQG DLKKKKKKKK GKLPKNYDPK VTPDPERWLP MRERSYYRGR 1551 1600 ENSP00000342181/1-671 KKGKKKDQIG KGTQGATAGA SSELDASKTV SSPPTSPRPG SAATVSASTS ENSBTAP00000014015/1-671 KKGKKKDQIG KGTQGATAGA SSELDASKTV SSPPTSPRPG SAATASTSTS ENSTTRP00000010377/1-634 KKGKKKDQIG KGTQGATVGA SSELDASKTV SSPPTSPRPG SAATASTSTS BACU000663/1-1924 KKGKKKDQIG KGTQGATAGA SSELDASKTV SSPPTSPRPG SAATASTSTS bmy_15132T0/1-658 KKGKKKDQIG KGTQGATAGA SSELDASKTV SSPPTSPRPG SAATASTSTS 1601 1650 ENSP00000342181/1-671 NIIPPRHQKP AGAPATKKKQ QQKKKKGGKG GW-------- ---------- ENSBTAP00000014015/1-671 NIIPPRHQKP AGAPATKKKQ QQKKKKGGKG GW-------- ---------- ENSTTRP00000010377/1-634 NIIPPRHQKP AGAPATKKKQ QQKKKKGGKG GW-------- ---------- BACU000663/1-1924 NIIPPRHQKP AGAPATKKKQ QQKKKKGGKG GWLRRICSVH PPASEREMPD bmy_15132T0/1-658 NIIPPRHQKP AGAPATKKKQ QQKKKKGGKG GW-------- ---------- 1651 1700 ENSP00000342181/1-671 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000014015/1-671 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000010377/1-634 ---------- ---------- ---------- ---------- ---------- BACU000663/1-1924 CSRRPSGQRG DRGGAVRCVD LRLLPASPAE ATPAGTPHRS SSARGRVGGG bmy_15132T0/1-658 ---------- ---------- ---------- ---------- ---------- 1701 1750 ENSP00000342181/1-671 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000014015/1-671 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000010377/1-634 ---------- ---------- ---------- ---------- ---------- BACU000663/1-1924 TETRVVGMER GKVKREKGKE PEKEKIRGKG KEEKDKKKEV EKEKIKEKEK bmy_15132T0/1-658 ---------- ---------- ---------- ---------- ---------- 1751 1800 ENSP00000342181/1-671 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000014015/1-671 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000010377/1-634 ---------- ---------- ---------- ---------- ---------- BACU000663/1-1924 ERGREEKSKS KEEKRKGWET EKGKEQFTEK EEKEEDNSTL AKPPLELLEK bmy_15132T0/1-658 ---------- ---------- ---------- ---------- ---------- 1801 1850 ENSP00000342181/1-671 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000014015/1-671 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000010377/1-634 ---------- ---------- ---------- ---------- ---------- BACU000663/1-1924 NKQILVLGLD GAGKTSVLHS LALNRVQHSV APTQGFHAVC ISTEDSQLEF bmy_15132T0/1-658 ---------- ---------- ---------- ---------- ---------- 1851 1900 ENSP00000342181/1-671 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000014015/1-671 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000010377/1-634 ---------- ---------- ---------- ---------- ---------- BACU000663/1-1924 LEIGGSEPFR SCWEMYLSKG LLLIFVVDSA DHNRLPEAKK HLHQLIGTNP bmy_15132T0/1-658 ---------- ---------- ---------- ---------- ---------- 1901 1950 ENSP00000342181/1-671 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000014015/1-671 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000010377/1-634 ---------- ---------- ---------- ---------- ---------- BACU000663/1-1924 ILPLVVFANK QDLEAAYHIT DIHEALALSE VGNDRKMFLF GTQVTENGSE bmy_15132T0/1-658 ---------- ---------- ---------- ---------- ---------- 1951 2000 ENSP00000342181/1-671 ---------- ---------- ENSBTAP00000014015/1-671 ---------- ---------- ENSTTRP00000010377/1-634 ---------- ---------- BACU000663/1-1924 IPSIMQDARD LIAQLAADMQ bmy_15132T0/1-658 ---------- ----------