KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:52:11 2014 Check: 00 .. Name: ENSTTRP00000012420/1-1005 Len: 1085 Check: 7369 Weight: 1.00 Name: ENSP00000347896/1-1003 Len: 1085 Check: 5691 Weight: 1.00 Name: ENSBTAP00000014034/1-1007 Len: 1085 Check: 8016 Weight: 1.00 Name: bmy_03880T0/1-1085 Len: 1085 Check: 9702 Weight: 1.00 Name: BACU008156/1-1008 Len: 1085 Check: 1750 Weight: 1.00 // 1 50 ENSTTRP00000012420/1-1005 MNGGNESSGA DRAGGPVATS VPIGWQRCVR EGAVLYISPS GTELSSLEQT ENSP00000347896/1-1003 MNGGNESSGA DRAGGPVATS VPIGWQRCVR EGAVLYISPS GTELSSLEQT ENSBTAP00000014034/1-1007 MNGGNESSGA DRAGGPVATS VPIGWQRCVR EGAVLYISPS GTELSSLEQT bmy_03880T0/1-1085 MNGGNESSGA DRAGGPVATS VPIGWQRCVR EGAVLYISPS GTELSSLEQT BACU008156/1-1008 MNGGNESSGA DRAGGPVATS VPIGWQRCVR EGAVLYISPS GTELSSLEQT 51 100 ENSTTRP00000012420/1-1005 RSYLLSDGTC KCGLECPLNV PKVFNFDPLA PVTPGGAGVG PASEEDMTKL ENSP00000347896/1-1003 RSYLLSDGTC KCGLECPLNV PKVFNFDPLA PVTPGGAGVG PASEEDMTKL ENSBTAP00000014034/1-1007 RSYLLSDGTC KCGLECPLNV PKVFNFDPLA PVTPGGAGVG PASEEDMTKL bmy_03880T0/1-1085 RSYLLSDGTC KCGLECPLNV PKVFNFDPLA PVTPGGAGVG PASEEDMTKL BACU008156/1-1008 RSYLLSDGTC KCGLECPLNV PKVFNFDPLA PVTPGGAGVG PASEEDMTKL 101 150 ENSTTRP00000012420/1-1005 CNHRRKAVAM ATLYRSMETT CSHSSP---- ---------- ---------- ENSP00000347896/1-1003 CNHRRKAVAM ATLYRSMETT CSHSSP---- ---------- ---------- ENSBTAP00000014034/1-1007 CNHRRKAVAM ATLYRSMETT CSHSSP---- ---------- ---------- bmy_03880T0/1-1085 CNHRRKAVAM ATLYRSMETT CSHSSPGESF HFTLETEENL RAWKRDGGRS BACU008156/1-1008 CNHRRKAVAM ATLYRSMETT CSHSSP---- ---------- ---------- 151 200 ENSTTRP00000012420/1-1005 ---------- ---------- ---------- ---------- ---------- ENSP00000347896/1-1003 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000014034/1-1007 ---------- ---------- ---------- ---------- ---------- bmy_03880T0/1-1085 FVRGKQGEGW SGELLGERRT QGSWEFMGEG MEKTKESSWK GSHRLILCFL BACU008156/1-1008 ---------- ---------- ---------- ---------- ---------- 201 250 ENSTTRP00000012420/1-1005 ---GEGASPQ MFHTVSPGPP SARPPCRVPP TTPLNGAPGS LPPEPPSVPQ ENSP00000347896/1-1003 ---GEGASPQ MFHTVSPGPP SARPPCRVPP TTPLNGGPGS LPPEPPSVSQ ENSBTAP00000014034/1-1007 ---GEGASPQ MFHTVSPGPP SARPPCRVPP TTPLNGGPGS LPPEPPSVPQ bmy_03880T0/1-1085 FIAGEGASPQ MFHTVSPGPP SARPPCRVPP TTPLNGAPGS LPPEPPSVPQ BACU008156/1-1008 ---GEGASPQ MFHTVSPGPP SARPPCRVPP TTPLNGAPGS LPPEPPSVPQ 251 300 ENSTTRP00000012420/1-1005 AFPPLAGPGG LFPQPRLPDP VPSGGSSSPC FLPRGNAPSP APPPPPAISL ENSP00000347896/1-1003 AFPTLAGPGG LFP-PRLADP VPSGGSSSPR FLPRGNAPSP APPPPPAISL ENSBTAP00000014034/1-1007 AFPPLAGPGG LFPQPRLPDP VSSGGSSSPC FLPRGNAPSP AAPPPPAISL bmy_03880T0/1-1085 AFPPLAGPGG LFPQPRLPDP VPSGGSSSPC FLPRGNAPSP APPPPPAISL BACU008156/1-1008 AFPPLAGPGG LFPQPRLPDP VPSGGSSSPC FLPRGNAPSP APPPPPAISL 301 350 ENSTTRP00000012420/1-1005 NAPSYSWGAA LRSSLVPPDL GSPPAPHASS SPPSDPPLFH CSDALTPPPL ENSP00000347896/1-1003 NAPSYNWGAA LRSSLVPSDL GSPPAPHASS SPPSDPPLFH CSDALTPPPL ENSBTAP00000014034/1-1007 NAPSYSWGAA LRSSLVPPDL GSPPAPHASS SPPSDPPLFH CSDALTPPPL bmy_03880T0/1-1085 NAPSYSWGAA LRSSLVPPDL GSSPAPHASS SPPSDPPLFH CSDALTPPPL BACU008156/1-1008 NAPSYSWGAA LRSSLVPPDL GSPPAPHASS SPPSDPPLFH CSDALTPPPL 351 400 ENSTTRP00000012420/1-1005 PPSNNLPGPP GPPGPATQPP VSSATMHLPL VLGPLGGAPT VEGPGAPPFL ENSP00000347896/1-1003 PPSNNLPAHP ---GPASQPP VSSATMHLPL VLGPLGGAPT VEGPGAPPFL ENSBTAP00000014034/1-1007 PPSNNLPGPP GPSGPATQPP VSSATMHLPL VLGPLGGAPS VEGPGAPPFL bmy_03880T0/1-1085 PPSNNLPGPP GPPGPATQPP VSSATMHLPL VLGPLGGAPT VEGPRAPPFL BACU008156/1-1008 PPSNNLPGPP GPPGPATQPP VSSATMHLPL VLGPLGGAPT VEGPGAPPFL 401 450 ENSTTRP00000012420/1-1005 ASSLLSAAAK AQHPPLPPPS TLQGRRPRAQ APSASHSSSS PRPSQRRPRR ENSP00000347896/1-1003 ASSLLSAAAK AQHPPLPPPS TLQGRRPRAQ APSASH-SSS LRPSQRRPRR ENSBTAP00000014034/1-1007 ASSLLSAAAK AQHPQFPPPS TLQGQRPRAQ APSASH-SSL PRPSQRRPRR bmy_03880T0/1-1085 ASSLLSAAAK AQHPPLPPPS TLQGRRPRAQ APSASHSSSS PRPSQRRPRR BACU008156/1-1008 ASSLLSAAAK AQHPPLPPPS TLQGRRPRAQ APSASHSSSS PRPSQRRPRR 451 500 ENSTTRP00000012420/1-1005 PPTVLRLLEE GGPQAPRRSR PRAPAPAPQP FPLPEPSQPI LPSVLSLLGL ENSP00000347896/1-1003 PPTVFRLLEG RGPQTPRRSR PRAPAPVPQP FSLPEPSQPI LPSVLSLLGL ENSBTAP00000014034/1-1007 PPTVLRLLEG GGPQAPRRSR PRAPAPTPQS FPLPEPSQPI LPSVLSLLGL bmy_03880T0/1-1085 PPTVLRLLEG GGPQAPRRSR PRAPAPAPQP FPLPEPSQPI LPSVLSLLGL BACU008156/1-1008 PPTVLRLLEG GGPQAPRRSR PRAPAPAPQP FPLPEPSQPI LPSVLSLLGL 501 550 ENSTTRP00000012420/1-1005 PTPGPPHSD- SFNLLGSDAH LPPXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000347896/1-1003 PTPGPSHSDG SFNLLGSDAH LPPPPTLSSG SPPQPRHPIQ PSLPGTTSGS ENSBTAP00000014034/1-1007 PTPGPSHSDG SFNLLGSEAH LPPPPTLSSG SSPQPTHPIP PALPGTTSGS bmy_03880T0/1-1085 PTPGPPNSDG SFNLLGSDAH LPPPPTLSSG SPPQPRHPIP PSLPGTTSGS BACU008156/1-1008 PTPGPPNSDG SFNLLGSDAH LPPPPTLSSG SPPQPRHPIP PSLPGTTSGS 551 600 ENSTTRP00000012420/1-1005 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000347896/1-1003 LSSVPGAPAP PAASKAPVVP SPVLQSPSEG LGMGAGPACP LPPLAGGEAF ENSBTAP00000014034/1-1007 LSSVPGAPAP PAASKAPLVP SPVLQSPSEA LGMGAGPAGP LPPLAGGEAF bmy_03880T0/1-1085 LSSVPGAPAP PAASKAPLVP SPVLQSPSEA LGMGSGPACP LPPLAGGEAF BACU008156/1-1008 LSSVPGAPAP PAASKAPLVP SPVLQSPSEA LGMGSGPACP LPPLAGGEAF 601 650 ENSTTRP00000012420/1-1005 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000347896/1-1003 PFPSPEQGLA LSGAGFPGML GALPLPLSLG QPPPSPLLNH SLFGVLTGGG ENSBTAP00000014034/1-1007 PFPSPEQGLA LSGAGFPGML GTLPLPLSLG QPPPSPLLSH SLFGVLAGGG bmy_03880T0/1-1085 PFPSPEQGLA LSGAGFPGML GTLPLPLSLG QPPPSPLLSH SLFGVLAGGG BACU008156/1-1008 PFPSPEQGLA LSGAGFPGML GTLPLPLSLG QPPPSPLLSH SLFGVLAGGG 651 700 ENSTTRP00000012420/1-1005 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXLP-PSAPP ENSP00000347896/1-1003 GQPPPEPLLP PPGGPGPPLA PGEPEGPSLL VASLLPPPPS DLLPPPSAPP ENSBTAP00000014034/1-1007 GQPPPEPLLP PPGGPGPPLA PGEPEGPSLL VASLLPPPPS DLLPPPSAPP bmy_03880T0/1-1085 GQPPPEPLLP PPGGPGPPLA PGEPEGPSLL VASLLPPPAS DLLPPPSAPP BACU008156/1-1008 GQPPPEPMLP PPGGPGPPLA PGEPEGPSLL VASLLPPPPS DLLPPPSAPP 701 750 ENSTTRP00000012420/1-1005 SNLLAP-LPL LALGPTAGDG EGSAEGAGGP SGETFSGLGD LPPLLFPPLS ENSP00000347896/1-1003 SNLLASFLPL LALGPTAGDG EGSAEGAGGP SGEPFSGLGD LSPLLFPPLS ENSBTAP00000014034/1-1007 SNLLASFLPL LALGPTAGDG EGSAEGAGGP SGETFSGLGD LPPLLFPPLS bmy_03880T0/1-1085 SNLLASFLPL LALGPTAGDG EGSAEGAGGP SGETFSGLGD LPPLLFPPLS BACU008156/1-1008 SNLLASFLPL LALGPTAGDG EGSAEGAGGP SGETFSGLGD LPPLLFPPLS 751 800 ENSTTRP00000012420/1-1005 APPTLIALNS ALLAASLDPP SGAPPQPCVL SAPQPGPPTS SVTTATTDPG ENSP00000347896/1-1003 APPTLIALNS ALLAATLDPP SGTPPQPCVL SAPQPGPPTS SVTTATTDPG ENSBTAP00000014034/1-1007 APPTLIALNS ALLAASLDPP SGTPPQPCVL SAPQPGPPTS SVTTATTDPG bmy_03880T0/1-1085 APPTLIALNS ALLAASLDPP SGAPPQPCVL SAPQPGPPTS SVTTATTDPG BACU008156/1-1008 APPTLIALNS ALLAASLDPP SGAPPQPCVL SAPQPGPPTS SVTTATTDPG 801 850 ENSTTRP00000012420/1-1005 ASSLGKAPSN SGRPPQLLSP LLSASLLGDL SSLTSSPGTL PSLLQPPGPL ENSP00000347896/1-1003 ASSLGKAPSN SGRPPQLLSP LLGASLLGDL SSLTSSPGAL PSLLQPPGPL ENSBTAP00000014034/1-1007 ASSLGKAPSN SGRPPQLLSP LLSASLLGDL SSLTSSPGTL PSLLQPPGPL bmy_03880T0/1-1085 ASSLGKAPSN SGRPPQLLSP LLSASLLGDL SSLTSSPGTL PSLLQPPGPL BACU008156/1-1008 ASSLGKAPSN SGRPPQLLSP LLSASLLGDL SSLTSSPGTL PSLLQPPGPL 851 900 ENSTTRP00000012420/1-1005 LSGQLGLQLL PVGGAPPPLS EASSPLACLL QSIQIPPEQP EAPCLPPESP ENSP00000347896/1-1003 LSGQLGLQLL PGGGAPPPLS EASSPLACLL QSLQIPPEQP EAPCLPPESP ENSBTAP00000014034/1-1007 LSGQLGLQLL PGGGAPPPLS EASSPLACLL QSLQIPPEQP EAPCLPPESP bmy_03880T0/1-1085 LSGQLGLQLL PVGGAPPPLS EASSPLACLL QSLQIPPEQP EAPCLPPESP BACU008156/1-1008 LSGQLGLQLL PVGGAPPPLS EASSPLACLL QSLQIPPEQP EAPCLPPESP 901 950 ENSTTRP00000012420/1-1005 TSALEPEPAR PPLSALAPPH GSPDPPVPEL LTGRGSGKRG RRGGGGLRGI ENSP00000347896/1-1003 ASALEPEPAR PPLSALAPPH GSPDPPVPEL LTGRGSGKRG RRGGGGLRGI ENSBTAP00000014034/1-1007 TSTLEPEPAR PPLSALAPPH SSPDPPVPEL LTGRGSGKRG RRGGGGLRGI bmy_03880T0/1-1085 TSALEPEPAR PPLSALAPPH SSPDPPVPEL LTGRGSGKRG RRGGGGLRGI BACU008156/1-1008 TSALEPEPAR PPLSALAPPH SSPDPPVPEL LTGRGSGKRG RRGGGGLRGI 951 1000 ENSTTRP00000012420/1-1005 NGEARPGRGR KPGSRREPGR LALKWGARGG FNGQMERSPR RTHHWQHNGE ENSP00000347896/1-1003 NGEARPARGR KPGSRREPGR LALKWGTRGG FNGQMERSPR RTHHWQHNGE ENSBTAP00000014034/1-1007 NGEARPGRGR KPGSRREPGR LALKWGARGG FNGQMERSPR RTHHWQHNGE bmy_03880T0/1-1085 NGEARPGRGR KPGSRREPGR LALKWGARGG FNGQMERSPR RTHHWQHNGE BACU008156/1-1008 NGEARPGRGR KPGSRREPGR LALKWGAGGG FNGQMERSPR RTHHWQHNGE 1001 1050 ENSTTRP00000012420/1-1005 LAEGGAEPKD PSPSGPHSED LKVPPGVVRK SRRGRRRKYN PTRNSNSSRQ ENSP00000347896/1-1003 LAEGGAEPKD PPPPGPHSED LKVPPGVVRK SRRGRRRKYN PTRNSNSSRQ ENSBTAP00000014034/1-1007 LAEGGAEPKD PSPPGPHSED LKVSPGVVRK SRRGRRRKYN PTRNSNSSRQ bmy_03880T0/1-1085 LAEGGAEPKD PSPSGPHSED LKVPPGVVRK SRRGRRRKYN PTRNSNSSRQ BACU008156/1-1008 LAEGGAEPKD PSPSGPHSED LKVPPGVVRK SRRGRRRKYN PTRNSNSSRQ 1051 1100 ENSTTRP00000012420/1-1005 DVTLDPSPTT RAAVPLPPRA RPGRPAKNKR RKLAP ENSP00000347896/1-1003 DITLEPSPTA RAAVPLPPRA RPGRPAKNKR RKLAP ENSBTAP00000014034/1-1007 DITLDPSPTT RAAVPLPPRA RPGRPAKNKR RKLAP bmy_03880T0/1-1085 DVTLDPSPTT RAAVPLPPRA RPGRPAKNKR RKLAP BACU008156/1-1008 DITLDPSPTT RAAVPLPPRA RPGRPAKNKR RKLAP