KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:52:13 2014 Check: 00 .. Name: ENSP00000348132/1-1019 Len: 1024 Check: 4770 Weight: 1.00 Name: ENSTTRP00000000104/1-1012 Len: 1024 Check: 5633 Weight: 1.00 Name: ENSBTAP00000014042/1-1019 Len: 1024 Check: 9143 Weight: 1.00 Name: bmy_20301T0/1-794 Len: 1024 Check: 6742 Weight: 1.00 Name: BACU003753/1-880 Len: 1024 Check: 7011 Weight: 1.00 // 1 50 ENSP00000348132/1-1019 MWVQGHSSRA SAT----ESV SFSGIVQMDE DTHYDKVEDV VGSHIEDAVT ENSTTRP00000000104/1-1012 VW-RGHFSRT SLA----KSA SFSGIVQMDE EVHYSKVEDV IGSHVEDAVT ENSBTAP00000014042/1-1019 MWGLGHSSRT SVA----GSA SFAGIVQMEE DKHCNKVEDV VGSHVEDAVT bmy_20301T0/1-794 M--------- ---------- ---------- ---------- ---------- BACU003753/1-880 MKAQRRLRKR SVGPEWPGHA SFSGIVQMDE EVHYSKVEDV VGSHVEDAVT 51 100 ENSP00000348132/1-1019 FWAQSINRNK DIMKIGCSLS EVCPQASSVL GNLDPNKIYG GLFSEDQCWY ENSTTRP00000000104/1-1012 FWAQSISRNK DIMKIGCSLS EVCPHASSVF GKLDPKKIYG GLFSEDKCWY ENSBTAP00000014042/1-1019 FWAQSINRNK DIMKIGCSLS EVCPLANSVF GNLDPKKIYG GLFSEDKCWY bmy_20301T0/1-794 ---------- ---------- ---------- ---------- ---------- BACU003753/1-880 FWAQSISRNN DIMKIGCSLS EVCPHASSVF GNLDPKK--- ---------- 101 150 ENSP00000348132/1-1019 RCKVLKIISV EKCLVRYIDY GNTEILNRSD IVEIPLELQF SSVAKKYKLW ENSTTRP00000000104/1-1012 RCKVLKIISD EKYLVRYIDY GNSEILSRSD IAEIPLDLQF SSVAKKYRLW ENSBTAP00000014042/1-1019 RCQVLKVIND EKCLVRYIDY GNTEILNRSD IVEIPLDLQF SSVAKKYRLW bmy_20301T0/1-794 ---------- ---------- ---------- ---------- ---------- BACU003753/1-880 ---------- ---------- ---------- ---------- ---------- 151 200 ENSP00000348132/1-1019 GLHIPSDQEV TQFDQGTTFL GSLIFEKEIK MRIKATSEDG TVIAQAEYGS ENSTTRP00000000104/1-1012 GLQIPSGQEV TQFDQGRIFL GSLIFEKQIK MRIKATYQDG TVIAQAEYGS ENSBTAP00000014042/1-1019 GLQIPSSQEV TQFDQGRTFL GSLIFEKEIK MRIKATYQDG TIIAQAEYGN bmy_20301T0/1-794 ---------- -----GRIFL GSLIFEKQIK MRIKAAYQDG TVIAQAEYGS BACU003753/1-880 ---------- -----GRIFL GSLIFEKQIK MRIKAAYQDG TVIAQAAYGS 201 250 ENSP00000348132/1-1019 VDIGEEVLKK GFAEKCRLAS RTDICEEKKL DPGQLVLRNL KSPIPLWGHR ENSTTRP00000000104/1-1012 VDIGEEVAKK GFAEKCKLTS STNICEEKKS DPGQLVL-NL KSPIPLWGH- ENSBTAP00000014042/1-1019 VDIGEEVAKK GFAEKCRLTS STNICEEKKS DPGQLVLRNL KSPIPLWGHR bmy_20301T0/1-794 VDIGEEVAKK GFAEKCKLTS STDICEEKKS DPGQLVLRNL KSPIPLWEHR BACU003753/1-880 VDIGEEVAKK GFAEKCKLTS STDICEEKKS DPGQLVLRNL KSPIPLWGHR 251 300 ENSP00000348132/1-1019 SNQSTFSRPK GHLSEKMTLD LKDENDAGNL ITFPKESLAV GDFNLGSNVS ENSTTRP00000000104/1-1012 SNQSPFI--K DHLSGRLSLD LKSXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000014042/1-1019 SSQSNFTRPK GRLSGRMCLD LKNENDAGNN VTFPKENLAV GDFNLGSNVS bmy_20301T0/1-794 SNQSPFIRPK NRLSGRLSLD LKSENDAGNH VALPKENLAV GGFNLGSNVS BACU003753/1-880 SNQSPFIRPK NRLSGRPSVD LKSENDAGNH VALPKENLAV GDFNLRSNVS 301 350 ENSP00000348132/1-1019 LEKIKQDQKL IEENEKLKTE KDALLESYKA LELKVEQIAQ ELQQEKAAAV ENSTTRP00000000104/1-1012 XXKIKQDQKL IEENERLKTE KEVLLERYKA LELKVEQT-Q ELQQEKATTM ENSBTAP00000014042/1-1019 LAKIKQDQKL IEENEKLKTE KEVLLERCKA LELKVEQTAQ ELQQEKATTM bmy_20301T0/1-794 LAKIKQDQKL IEENEKLKTE KEVLLERYKA LELKVEQTVQ ELQQEKATTM BACU003753/1-880 LAKIKQDQKL IEENEKLKTE KEVLLERYKA LELKVEQTVQ ELQQEKATTM 351 400 ENSP00000348132/1-1019 DLTNHLEYTL KTYIDTRMKN LAAKMEILKE MRHVDISVRF GKDLSDAIQV ENSTTRP00000000104/1-1012 DLTKHLESTL KTCVGTRMKN LAAKVEILKE IRCVNINAHF GNDLSDAMQV ENSBTAP00000014042/1-1019 DLTKRLESTV KTCIGTRMKN LAAKVEILKE IRRVSISVRF GNDLSDAIQV bmy_20301T0/1-794 DLTKHLESTL KTCVGTRMKN LAAKVEILKE IRCVNINVHF GNDLSDAIQV BACU003753/1-880 DLTKHLESTL KTCVGTRMKN LAAKVEILKE IRCVNVNVRF GNDLSDAIQV 401 450 ENSP00000348132/1-1019 LDEGCFTTPA SLNGLEIIWA EYSLAQENIK TCEYVSEGNI LIAQRNEMQQ ENSTTRP00000000104/1-1012 LDEGCFTLPA SLNELEIIWA EYCLAQGKIQ ACQNMNEGNI LIAKRNEVQQ ENSBTAP00000014042/1-1019 LDEDCFTIPA SLNELELIWA EYNLAQEKIQ TCENVNEGNI LIAERNEVQQ bmy_20301T0/1-794 LYEDCFTIPA SLNELEIIWA EYCLAQEKIQ TCQNVNEGNI LIAKRNEVQQ BACU003753/1-880 LYEDCFTIPA SLNELEIIWA EYCLAQEKIQ TCQNVNEGNI LIAKRNEVQQ 451 500 ENSP00000348132/1-1019 KLYMSVEDFI LEVDESSLNK RLKTLQDLSV SLEAVYGQAK EGANSDEILK ENSTTRP00000000104/1-1012 KLYMAVEVFI LEVDELPLNK RLKTLQDLSA SLEAVYGQAK EGTNSEEILK ENSBTAP00000014042/1-1019 KLYMAVEVFI LEVDELSLNK RLKTLQDLSA SLEAVYGQAK EGINSEEILE bmy_20301T0/1-794 KLYMAVEVFI LEVDELPLNK RLKTLQDLSV SLEAVYGQAT EGTNSEETLK BACU003753/1-880 KLYMAVEVFI LEVDELPLNK RLKTLQDLSA SLEAVYGQAT EGTNSEETLK 501 550 ENSP00000348132/1-1019 KFYDWKCDKR EEFTSVRSET DASLHRLVAW FQRTLKVFDL SVEGSLISED ENSTTRP00000000104/1-1012 KFYDWKCNKR ELFTSVRSET EVSLQHLVTW FQSTLKAFDL SVEESLTSED ENSBTAP00000014042/1-1019 KFNDWRCNKR EEFTSVRSET ETCIQRLIAW FQNTLKAFDL SVDKSLISDD bmy_20301T0/1-794 KFYDWKCNKR DELTSVRSET EVSLQHLVTW FQSTLKAFDL SVEESLTSED BACU003753/1-880 KFYDWKCNKR EELTSVRSET EVSLQHLVTW FQSTLKAFDL SVEESLTSED 551 600 ENSP00000348132/1-1019 AMDNIDEILE KTESSVCKEL EIALVDQGDA DKEIISNTYS QVLQKIHSEE ENSTTRP00000000104/1-1012 TIGNIDEILE KAGSSVCKEL EISLIEQGDA DKEITLNAYS QVVQKIRSEE ENSBTAP00000014042/1-1019 TIDNIDEILE NTESGVCKEL EISLIEQGDA DKEIILKTCS QVLQKIRSEE bmy_20301T0/1-794 TIGNIDEILE KTESSVCKEL DISLIEQGDA DKEITLNTYS QVVQKIRSEE BACU003753/1-880 TIGNIDEILE KTESGVCKEL EISLTEQGDA DKEITLNTYS QVVQKIRSEE 601 650 ENSP00000348132/1-1019 RLIATVQAKY KDSIEFKKQL IEYLNKSPSV DHLLSIKKTL KSLKALLRWK ENSTTRP00000000104/1-1012 RLIATVQSKY KDSVEFKKQI IECLNKSPNV DHLLSIKKTL KSLKARLRWK ENSBTAP00000014042/1-1019 SLIATVQSKY KDSVEFKKQI IECLNKSPSV DHLLSIKKTL KSLKARLRWK bmy_20301T0/1-794 RLIATVQSKY KDSVEFKKQI IECLNKSPNV DHLLSIKKTL KSLKARLRWK BACU003753/1-880 RLIATVQSKY KDSVEFKKQI IECLNKSPNV DHLLSIKKTL KNLKARLRWK 651 700 ENSP00000348132/1-1019 LVEKSNLEES DDPDGSQIEK IKEEITQLRN NVFQEIYHER EEYEMLTSLA ENSTTRP00000000104/1-1012 LVEKNNLEES DDHDGSEIEE IKQEITQLQN SVFQEIYHER EEYEKLNSLV ENSBTAP00000014042/1-1019 LVEKNNLEES DDHDGSEIEK IKQEITQLRN SVFEGIYHEQ EEYAKLSSLV bmy_20301T0/1-794 LVEKNNLEES DDHDGSEIEE IKQEITQLRN SVFQEIYHER EEYEKLNSLV BACU003753/1-880 LVEKNNLEES DDHDGSEIEE IKQEITQLRN SVFQEIYHER EEYEKLKSLV 701 750 ENSP00000348132/1-1019 QKWFPELPLL HPEIGLLKYM NSGGLLTMSL ERDLLDAEPM KELSSKRPLV ENSTTRP00000000104/1-1012 QKWFPELPLL YPEIGLLKYM NSGGLLTMSL ERDLLDAEPM KELSGKRPLV ENSBTAP00000014042/1-1019 QKWFPELPLL HPEIGLLKYM NSGGLLTMSL ERDLLDAEPM KELSSKRPLI bmy_20301T0/1-794 QKWFPELPLL HPEIGLLKYM NSGGLLTMSL ERDLLDAEPM KELSRKRPLV BACU003753/1-880 QKWFPELPLL HPEIGLLEYM NSGGLLTMSL ERDLLDAEPM KELSRKRPLV 751 800 ENSP00000348132/1-1019 RSEVNGQIIL L-KGYSVDVD TEAKVIERAA TYHRAWREAE GDSGLLPLIF ENSTTRP00000000104/1-1012 CSEVNGQIIL L-KGYSVDVD TEARVIQRAA AYHRAWREAK EESGLLPLIF ENSBTAP00000014042/1-1019 CSEVNGQIIL LKKGYSVDVD TEARVIQRAA AYHTAWREAK GESGLLPLIF bmy_20301T0/1-794 CSEVNGQIVL L-KGYSVDVD TETRVIQRAA AYHRAWREAK EESGLLPLIF BACU003753/1-880 CSEVNGQIIL L--------- ---------- ---------- ---------- 801 850 ENSP00000348132/1-1019 LFLCKSDPMA YLMVPYYPRA NLNAVQANMP LNSEETLKVM KGVAQGLHTL ENSTTRP00000000104/1-1012 LFLCKSDPMA YLMVPYYPRA NLSAIQSSMP LTLEEALKVM KGVAQGLHTL ENSBTAP00000014042/1-1019 LFLCKSDPMA YLMVPYYPRA NLNAVQSTMP LTSEEVLKVM KGVAQGLHTL bmy_20301T0/1-794 LFLCKSDPMA YLMVPYYPRA NLSAIQSSMP LTLEEALKVM KGVAQGLHTL BACU003753/1-880 ----KSDPMA YLMVPYYPRA NLSAIQSSMP LTLEEALKVM KGVAQGLHTL 851 900 ENSP00000348132/1-1019 HKADIIHGSL HQNNVFALNR EQGIVGDFDF TKSVSQRASV NMMVGDLSLM ENSTTRP00000000104/1-1012 HKADIIHGSL HQNNVFALNR QQGIVGDFDF TKSVSQRASV NMMIGDLSLX ENSBTAP00000014042/1-1019 HKADIVHGSL HQNNVFALNR QHGIVGDFDF TKSVSQRTSV NMMVGDLSLL bmy_20301T0/1-794 HKADIIHGSL HQNNVFALNR QHGIVGDFDF TKSVSQRASV NMMVGDLSLL BACU003753/1-880 HKADIIHGSL HQNNVFALNR QHGIVGDFDF TKSVSQRASV NMMVGDLSLL 901 950 ENSP00000348132/1-1019 SPELKMGKPA SPGSDLYAYG CLLLWLSVQN QEFEINKDGI PKVDQFHLDD ENSTTRP00000000104/1-1012 XXXXXXXXXX XXXXXXXXXX XXXXXLSVQN QKFETNEDGI PKVDQFHLDD ENSBTAP00000014042/1-1019 SPELKMGKPA SPSSDLYAYG CLLLWLSVQN QEFETNEDGI PKMDQFHLDD bmy_20301T0/1-794 SPELKMGKPA SPSSDLYAYG CLLLWVCY-- ---------- -----FFIET BACU003753/1-880 SPELKMGKPA SPSSDLYAYG CLLLWLSVQN QEFETNEDGI PKVDQFHLDD 951 1000 ENSP00000348132/1-1019 KVKSLLCSLI CYRSSMTAEQ VLNAECFLMP KEQSVPNPEK DTEYTLYKKE ENSTTRP00000000104/1-1012 NVKSLLCSLI YCRSSMTAEQ VFNAECFLLP KGKSTPNSEK DTEYTPKKEE ENSBTAP00000014042/1-1019 NVKSLLCSLI CCRSSMTAEQ VLNADCFLLP KGKSMPNSEK DTEYIPKKEE bmy_20301T0/1-794 DK-----SFI YIYFSIESDD LKWLSSVYYS E--------- ---------- BACU003753/1-880 NVKSLLCSLI YCRSSVTAEQ VFNAECFLLP KGKSTPNSEK DTEYTPKKEE 1001 1050 ENSP00000348132/1-1019 EEIKTENLDK CMEKTRNGEA NFDC ENSTTRP00000000104/1-1012 E-LKVENLDK DKEKTRYGEA SFDL ENSBTAP00000014042/1-1019 EELKVKNLDK DKEKTRNGEA SFD- bmy_20301T0/1-794 ---------- ---------- ---- BACU003753/1-880 E--------- ---------- ----