KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:52:15 2014 Check: 00 .. Name: bmy_08597T0/1-339 Len: 517 Check: 4181 Weight: 1.00 Name: ENSTTRP00000011021/1-404 Len: 517 Check: 7187 Weight: 1.00 Name: BACU016234/1-481 Len: 517 Check: 9514 Weight: 1.00 Name: ENSP00000361645/1-395 Len: 517 Check: 3838 Weight: 1.00 Name: ENSBTAP00000014049/1-395 Len: 517 Check: 2448 Weight: 1.00 // 1 50 bmy_08597T0/1-339 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000011021/1-404 MDFNMKKLAS DAGIFFTRAV Q--------- ---------- ---------- BACU016234/1-481 MDFNMKKLAS DAGIFFTRAV QKAQCPVEDL CPREGLLLHV PSPAGDPSPS ENSP00000361645/1-395 MDFNMKKLAS DAGIFFTRAV Q--------- ---------- ---------- ENSBTAP00000014049/1-395 MDFNMKKLAS DAGIFFTRAV Q--------- ---------- ---------- 51 100 bmy_08597T0/1-339 ---------- ---------- ---------- ---------- -------MKE ENSTTRP00000011021/1-404 ---------- -------FTE EKFGQAEKTE LDAQFENLLA RADSTKNWTE BACU016234/1-481 GDASSLEFIG QPLFIQKFTE EKFGQAEKTE LDAQFENLLA RADSTKNWTE ENSP00000361645/1-395 ---------- -------FTE EKFGQAEKTE LDAHFENLLA RADSTKNWTE ENSBTAP00000014049/1-395 ---------- -------FTE EKFGQAEKTE LDAHFESLLA RADSTKNWTE 101 150 bmy_08597T0/1-339 DLPRVTRSVV QADAGARVEE FLYEKLDRKV PSRVTNGELL AQYMAEAASE ENSTTRP00000011021/1-404 KILRQTEVLL QPNPXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX BACU016234/1-481 KILRQTEVLL QPNPSARVEE FLYEKLDRKV PSRVTNGELL AQYMAEAASE ENSP00000361645/1-395 KILRQTEVLL QPNPSARVEE FLYEKLDRKV PSRVTNGELL AQYMADAASE ENSBTAP00000014049/1-395 KILRQTEVLL QPNPSARVEE FLYEKLDRKV PSRVTNGELL AQYMAEAASE 151 200 bmy_08597T0/1-339 LGPTTPYGKT LIKVAEAEKR LGAAERDFIH TASINFLTPL RTFLEGDWKT ENSTTRP00000011021/1-404 XXXXXXXXKT LIKVAEAEKR LGAAERDFIH TASIGFLTPL RTFLEGDWKT BACU016234/1-481 LGPTTPYGKT LIKVAEAEKR LGAAERDFIH TASINFLTPL RTFLEGDWKT ENSP00000361645/1-395 LGPTTPYGKT LIKVAEAEKQ LGAAERDFIH TASISFLTPL RNFLEGDWKT ENSBTAP00000014049/1-395 LGPTTPYGKT LIKVAEAEKH LGAAERDFIH TASINFLTPL RNFLEGDWKT 201 250 bmy_08597T0/1-339 ISKERRLLHN RRLDLDACKA RLKKAKAAEA KA-----TVG VLLASCPPPA ENSTTRP00000011021/1-404 ISKERRLLHN RRLDLDACKA RLKKAKAAEA KATCEGDTVP DFQETRPRNY BACU016234/1-481 ISKERRLLHN RRLDLDACKA RLKKAKAAEA KAT----TVP DFQETRPRNY ENSP00000361645/1-395 ISKERRLLQN RRLDLDACKA RLKKAKAAEA KAT----TVP DFQETRPRNY ENSBTAP00000014049/1-395 ISKERRLLQN RRLDLDASKA RLKKAKAAEA KAT----TVP DFQETRPRNY 251 300 bmy_08597T0/1-339 LVGAKEGVKE PGVWRD---- ---------- -------FSP LSLPG----- ENSTTRP00000011021/1-404 ILSASASAL- ---WNDEVDK AEQELRVAQS EFDRQAEVTR LLLEGISSTH BACU016234/1-481 ILSASASAL- ---WNDEADK AEQELRVAQT EFDRQAEVTR LLLEGISSTH ENSP00000361645/1-395 ILSASASAL- ---WNDEVDK AEQELRVAQT EFDRQAEVTR LLLEGISSTH ENSBTAP00000014049/1-395 ILSASASAL- ---WNDEVDK AEQELRVAQT EFDRQAEVTR LLLEGISSTH 301 350 bmy_08597T0/1-339 ---------- ---------- ---------- ---------- -------EAW ENSTTRP00000011021/1-404 ---------- ---------- ---------- ---------- VNHLRCLHEF BACU016234/1-481 VSPAPRFLLS STVFSPPLAP RVPVKLGHIE AASEPGSRRQ VNHLRCLHEF ENSP00000361645/1-395 ---------- ---------- ---------- ---------- VNHLRCLHEF ENSBTAP00000014049/1-395 ---------- ---------- ---------- ---------- VNHLRCLHEF 351 400 bmy_08597T0/1-339 LVAAALLTTS GYASLPHLQW TPGGPEPWDP GQTLMGWADQ QCPDLGSGQP ENSTTRP00000011021/1-404 VESQTTYYAQ CYRHMLDLQK QLGISQGAIF PGTFVGTTEP ASPPLSSTSP BACU016234/1-481 VESQTTYYAQ CYRHMLDLQK QLG-----RF PGTFVGTTEP ASPPLSSTSP ENSP00000361645/1-395 VKSQTTYYAQ CYRHMLDLQK QLG-----RF PGTFVGTTEP ASPPLSSTSP ENSBTAP00000014049/1-395 IESQTTYYAQ CYRHMLDLQK QLG-----RF PGTFVGTAEP ASPPLSSTSP 401 450 bmy_08597T0/1-339 AASPDRQPAG FLHAPALPSL GARLCSRLCP DMAPPTNSPT CCSSAGPRVP ENSTTRP00000011021/1-404 TTAAATMPGG -------PSV A--------- SLAPPGEAAL RLEEVAPPAS BACU016234/1-481 TTAAATMPVG -------PSV A--------- GLAPPGEAAL RLEEVAPPTS ENSP00000361645/1-395 TTAAATMPVV -------PSV A--------- SLAPPGEASL CLEEVAPPAS ENSBTAP00000014049/1-395 TTTAATMPMG -------PSV A--------- DLAPPGEAAL RLEEVAPPAS 451 500 bmy_08597T0/1-339 CAQAP--LWW YGGPQSWTAY LPRGMSEGPF GSPTALDRAW AVLAPPSLSA ENSTTRP00000011021/1-404 GTRKARVLYD YEAADSSELA LLADELITVY SLP-GMDPDW LI------GE BACU016234/1-481 GTRKARVLYD YEAADSSELA LLAEELITVY SLP-GMDPDW LI------GE ENSP00000361645/1-395 GTRKARVLYD YEAADSSELA LLADELITVY SLP-GMDPDW LI------GE ENSBTAP00000014049/1-395 GTRKARVLYD YEAADSSELA LLADELITVY SLP-GMDPDW LI------GE 501 550 bmy_08597T0/1-339 HGGLSSQADG TQCGTL- ENSTTRP00000011021/1-404 RGNKKGKVPV TYLELLS BACU016234/1-481 RGNKKGKVPV TYLELLS ENSP00000361645/1-395 RGNKKGKVPV TYLELLS ENSBTAP00000014049/1-395 RGNKKGKVPV TYLELLS