KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:52:19 2014 Check: 00 .. Name: ENSP00000407193/1-525 Len: 525 Check: 9791 Weight: 1.00 Name: ENSBTAP00000014061/1-328 Len: 525 Check: 9978 Weight: 1.00 Name: ENSTTRP00000011943/1-525 Len: 525 Check: 4816 Weight: 1.00 Name: bmy_14588T0/1-456 Len: 525 Check: 3943 Weight: 1.00 Name: BACU011457/1-525 Len: 525 Check: 1906 Weight: 1.00 // 1 50 ENSP00000407193/1-525 MGWLFLKVLL AGVSFSGFLY PLVDFCISGK TRGQKPNFVI ILADDMGWGD ENSBTAP00000014061/1-328 MAWLSLKVWL VGLSFLGCLY PLVDFSFSGE TRGQKPNFVI ILADDMGWGD ENSTTRP00000011943/1-525 MACPFLKVLL VGVSFLGCLY PLVDFSFSGE TREQKPNFVI ILADDMGWGD bmy_14588T0/1-456 ---------- ---------- ---------- ---------- ---------- BACU011457/1-525 MAWPFLKVLL VGVSFLGCLY PLVDFSFSGE TRDQKPNFVI ILADDMGWGD 51 100 ENSP00000407193/1-525 LGANWAETKD TANLDKMASE GMRFVDFHAA ASTCSPSRAS LLTGRLGLRN ENSBTAP00000014061/1-328 LGANWAGTKD TANLDRMAAE GTRFVDFHAA ASTCSPSRAA LLTGRLGLRN ENSTTRP00000011943/1-525 LGANWAETKD TANLDKMAAE GMRFVDFHAA ASTCSPSRAA LLTGRLGLRN bmy_14588T0/1-456 ---------- ---------M KIRFVDFHAA ASTCSPSRAA LLTGRLGLRN BACU011457/1-525 LGANWAETKD TANLDKMAAE GMRFVDFHAA ASTCSPSRAA LLTGRLGLRN 101 150 ENSP00000407193/1-525 GVTRNFAVTS VGGLPLNETT LAEVLQQAGY VTGIIGKWHL GHHGSYHPNF ENSBTAP00000014061/1-328 GVTHNFAVTS VGGLPLNETT LAEVLRGAGY VTGMIGKWHL GHHGSHHPNF ENSTTRP00000011943/1-525 GVPHNFAVTS VGGLPLNETT LAEVLQRAGY VTGLIGKWHL GHHGSYHPNF bmy_14588T0/1-456 GVPRNFAVTS VGGLPLNETT LAEVLQRAGY VTGLIGKWHL GHHGSYHPNF BACU011457/1-525 GVPRNFAVTS VGGLPLNETT LAEVLQRAGY VTGLIGKWHL GHHGSYHPNF 151 200 ENSP00000407193/1-525 RGFDYYFGIP YSHDMGCTDT PGYNHPPCPA CPQGDGPSRN LQRDCYTDVA ENSBTAP00000014061/1-328 RGFDYYFGVP YSHDMGCTDT PGYNHPPCPA CPRGDRPSRN LERDCYSDVA ENSTTRP00000011943/1-525 RGFDYYFGIP YSHDMGCTDT PGYNHPPCPA CPRGGRPSRN PEKDCHSDVA bmy_14588T0/1-456 RGFDYYFGIP YSHDMGCTDT PGYNHPPCPA CPRGSRPSRN LEKDCYSDVA BACU011457/1-525 RGFDYYFGIP YSHDMGCTDT PGYNHPPCPA CPRGGRPSRN LEKGCYSDVA 201 250 ENSP00000407193/1-525 LPLYENLNIV EQPVNLSSLA QKYAEKATQF IQRASTSGRP FLLYVALAHM ENSBTAP00000014061/1-328 LPLYENLNIV EQPVNLSALA QKYAEKATQF IQQASTSGRP FLLYVGLAHM ENSTTRP00000011943/1-525 LPLYENLSIV EQPVNLSGLA QKYAEKATQF IQRASASGRP FLLYVGLAHM bmy_14588T0/1-456 LPLYENLNIV EQPVNLSGLA QKYAEKATQF IQRASASGRP FLLYVGLAHM BACU011457/1-525 LPLYENLSIV EQPVNLSGLA QKYAEKATQF IQRASASGRP FLLYVGLAHM 251 300 ENSP00000407193/1-525 HVPLPVTQLP AAPRGRSLYG AGLWEMDSLV GQIKDKVDHT VKENTFLWFT ENSBTAP00000014061/1-328 HVPLAGTPPS AGPRGQRLYS AGLREMDHLV GRIKDTVDLV AKNNTFLWFT ENSTTRP00000011943/1-525 HVPLSRTLLS AEPGGRRPYS AALREMDSLV GQIKDKVDLT AKNNTFLWFT bmy_14588T0/1-456 HVPLSRNLLS AEPGGRRPYS VALREMDSLV GQIKDKVDLT AQNNTFLWFT BACU011457/1-525 HVPLSRNLLS AEAGGRRPYS AALREMDSLV GQIKDKVDLT AKNNTFLWFT 301 350 ENSP00000407193/1-525 GDNGPWAQKC ELAGSVGPFT GFWQTRQGGS PAKQTTWEGG HRVPALAYWP ENSBTAP00000014061/1-328 GDNGPWAQKC ELAGSVGPFT GSWQARRG-- ---------- ---------- ENSTTRP00000011943/1-525 GDNGPWAQKC ELAGSMGPFT GSWQTRQXXX XXXXXXXXXX XXXXXXXXXX bmy_14588T0/1-456 GDNGPWAQKC ELAGSMGPFT GSWQTRQGGS PAKQTTWEGG HRVPALAYWP BACU011457/1-525 GDNGPWAQKC ELAGSMGPFA GSWQTRQGGS PAKQTTWEGG HRVPALAYWP 351 400 ENSP00000407193/1-525 GRVPVNVTST ALLSVLDIFP TVVALAQASL PQGRRFDGVD VSEVLFGRSQ ENSBTAP00000014061/1-328 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000011943/1-525 XXXXXXXXXX XXXXVLDIFP TVVALAGASL PQGRHFDGLD ASEVLFGRAQ bmy_14588T0/1-456 GRVPVNVTST ALLSVLDIFP TVVALAGASL PRGRHFDGLD ASEVLFGRAQ BACU011457/1-525 GRVPVNVTST ALLSVLDIFP TVVALAGASL PQGRRFDGLD ASEVLFGRAQ 401 450 ENSP00000407193/1-525 PGHRVLFHPN SGAAGEFGAL QTVRLERYKA FYITGGARAC DGSTGPELQH ENSBTAP00000014061/1-328 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000011943/1-525 AGHRVLFHPN SGAAGEDGAL QTVRVERYKA FFVTGGARAC DGSVGPERHH bmy_14588T0/1-456 AGHRVLFHPN SGAAGEDGAL QTVRLERYKA FFVTGGARAC DGSVGPEWHH BACU011457/1-525 AGHRVLFHPN SGAAGEDGAL QTVRLERYKA FFVTGGARAC DGSVGPEWYH 451 500 ENSP00000407193/1-525 KFPLIFNLED DTAEAVPLER GGAEYQAVLP EVRKVLADVL QDIANDNISS ENSBTAP00000014061/1-328 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000011943/1-525 EPPLIFNLDD DVAEAAPLDR GSAEYQRVLP EVRAALSEVL EDIAGDNTSR bmy_14588T0/1-456 EPPLIFNLDG DVAEAAPLER GSAEYQRVLP EVSAALSGVL EDIAGDSISR BACU011457/1-525 EPPLIFNLDG DVAEAAPLER GSAEYQRVLP EVRAALSGVL EDIAGDNTSR 501 550 ENSP00000407193/1-525 ADYTQDPSVT PCCNPYQIAC RCQAA ENSBTAP00000014061/1-328 ---------- ---------- ----- ENSTTRP00000011943/1-525 ADYSQDPSVT PCCNPHQTAC RCQAA bmy_14588T0/1-456 ADYSQDPSVA PCCNPHRTAC RCQAA BACU011457/1-525 ADYSQDPAAA PCCNPRQTAC RCRAA