KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:52:21 2014 Check: 00 .. Name: ENSTTRP00000011022/1-646 Len: 658 Check: 8818 Weight: 1.00 Name: ENSP00000351138/1-593 Len: 658 Check: 5099 Weight: 1.00 Name: ENSBTAP00000014090/1-593 Len: 658 Check: 5800 Weight: 1.00 Name: bmy_08596T0/1-432 Len: 658 Check: 3957 Weight: 1.00 Name: BACU016233/1-553 Len: 658 Check: 6611 Weight: 1.00 // 1 50 ENSTTRP00000011022/1-646 MEGPGARAVE GGGSGHLALW RDLLVCVSLS FRGVDGARDP ASNQLKTFSL ENSP00000351138/1-593 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000014090/1-593 ---------- ---------- ---------- ---------- ---------- bmy_08596T0/1-432 ---------- ---------- ---------- ---------- ---------- BACU016233/1-553 ---------- ---------- ---------- ---------- ---------- 51 100 ENSTTRP00000011022/1-646 EALGPEGFDW GPAPAMAFRR TEGVSVIQ-- AAMVAEI-LC LYTTFGQSAF ENSP00000351138/1-593 ---------- -----MAFRR AEGTSMIQAL AMTVAEIPVF LYTTFGQSAF ENSBTAP00000014090/1-593 ---------- -----MAFRR TEGMSMIQAL AMTVAEIPVF LYTTFGQSAF bmy_08596T0/1-432 ---------- -----MAFRR TEGVSMIQAL AMTVAEIPVF LYTTFGQSAF BACU016233/1-553 ---------- -----MAFRR TEGVSMIQAL AMTVAEIPVF LYTTFGQSAF 101 150 ENSTTRP00000011022/1-646 SQLRLTPGLR KVLFATALGT VALALAAHQL KRRRRKKKQV GPEMGGEHLG ENSP00000351138/1-593 SQLRLTPGLR KVLFATALGT VALALAAHQL KRRRRRKKQV GPEMGGEQLG ENSBTAP00000014090/1-593 SQLRLTPGLR KVLFATALGT VALALAAHQL KRRRRKKKQV GPEMGGEHLG bmy_08596T0/1-432 SQLRLTPGLR KVLFATALGT VALALAAHQL KRRRRKKKQV GPEMGGEHLG BACU016233/1-553 SQLRLTPGLR KVLFATALGT VALALAAHQL KRRRRKKKQV GPEMGGEHLG 151 200 ENSTTRP00000011022/1-646 TAPLPILMAR KVPSVKKGYS SRRVQSPSSK SNDTLSGISS IEPSKHSGSS ENSP00000351138/1-593 TVPLPILLAR KVPSVKKGYS SRRVQSPSSK SNDTLSGISS IEPSKHSGSS ENSBTAP00000014090/1-593 TVPLPILMAR KVPSVKKGYS NRRVQSPSSK SNDTLSGISS IEPSKHSGSS bmy_08596T0/1-432 T--------- ---------- ------PESQ RRE------- ---------- BACU016233/1-553 TVPLPILMAR KVPSLKKGYS SRRVQSPSSK SNDTLSGISS IEPSKHSGSS 201 250 ENSTTRP00000011022/1-646 HSLASMVVVN SSSPVAACSG PWDTRGMEES VTTSSGNAES LYMQGMELFE ENSP00000351138/1-593 HSVASMMAVN SSSPTAACSG LWDARGMEES LTTSDGNAES LYMQGMELFE ENSBTAP00000014090/1-593 HSLASMVVVN SSSPTAACSG PWETRGIEES VTTADGNAES LYMQGMELFE bmy_08596T0/1-432 ---------- ---------- ---------- ---------- --------FA BACU016233/1-553 HSLASMVVVN SSSPVAACSG PWDTRGMEES VTTSSGNAES LYMQGMELFE 251 300 ENSTTRP00000011022/1-646 EALQKWEQAL SVGQR----- ----GDGLRN PETASEALSE PESQRREFAE ENSP00000351138/1-593 EALQKWEQAL SVGQRGDSGS TPMPRDGLRN PETASEPLSE PESQRKEFAE ENSBTAP00000014090/1-593 EALQKWEQAL SVGQRGDSGS TPTPGDGLRN PETASEALSE PESQRKEFAE bmy_08596T0/1-432 EKL------- ---------- ---------- ---------E P--------- BACU016233/1-553 EALQKWEQAL SVGQR----- ----GDGLRN PETASEAPSE X--------- 301 350 ENSTTRP00000011022/1-646 KLESLLHRAY HLQEEFGSTF PADNMLLDLE RTLMLPLTEG SLHLRADHED ENSP00000351138/1-593 KLESLLHRAY HLQEEFGSTF PADSMLLDLE RTLMLPLTEG SLRLRADDED ENSBTAP00000014090/1-593 KLESLLHRAY HLQEEFGSTF PADSMLLDLE RTLMLPLTEG SLRLRADDGD bmy_08596T0/1-432 ----LLHRAY HLQEEFGSTF PADNMLLDLE RTLMLPLTEG SLHLRADHEN BACU016233/1-553 ----XXNRAY HLQEEFGSTF PADNMLLDLE RTLMLPLTEG SLHLRADHEN 351 400 ENSTTRP00000011022/1-646 SLTSEDSFFS ATELFESLQV GDYPSPLSRP AAAYEEALQL VKEGRVPCRT ENSP00000351138/1-593 SLTSEDSFFS ATELFESLQT GDYPIPLSRP AAAYEEALQL VKEGRVPCRT ENSBTAP00000014090/1-593 SLTSEDSFFS ATELFESLQV GDYPIPLSRP AAAYEEALQL VKEGKVPCRT bmy_08596T0/1-432 SLTSEDSFFS ATELFEPLQV GGYPSPLSRP AAAYEEALQL VKEGRVPCRT BACU016233/1-553 SLTSEDSFFS ATELFEPLQV GDYPSPLSRP AAAYEEALQL VKEGRVPCRT 401 450 ENSTTRP00000011022/1-646 LRTELLGCYS DQDFLAKLHC VRQAFEGLLE DKSHQYFFGE VGRQMVTGLM ENSP00000351138/1-593 LRTELLGCYS DQDFLAKLHC VRQAFEGLLE DKSNQLFFGK VGRQMVTGLM ENSBTAP00000014090/1-593 LRTELLGCYS DQDFLAKLHC VRQAFEGLLE DKSHQLFFGE VGRQMVTGLM bmy_08596T0/1-432 L--------S DQDFLAKLHC VRQAFEGLLE DKSHQFFFGQ VGRQMVMGLM BACU016233/1-553 LRTELLGCYS DQDFLAKLHC VRQAFEGLLE DKSHQFFFGQ VGRQMVTGLM 451 500 ENSTTRP00000011022/1-646 TKAEKSPKGF LESYEEMLSY ALRPETWATT RLELEGRGVV CMSFFDIVLD ENSP00000351138/1-593 TKAEKSPKGF LESYEEMLSY ALRPETWATT RLELEGRGVV CMSFFDIVLD ENSBTAP00000014090/1-593 TKAEKSPKGF LESYEEMLSY ALRPETWATT RLELEGRGVV CMSFFDIVLD bmy_08596T0/1-432 TKAEKSPKGF LESYEEMLSY ALRPETWATT RLELEGRGVV CMSFFDIVLD BACU016233/1-553 TKAEKSPKGF LESYEEMLSY ALRPETWATT RLELEGRGVV CMSFFDIVLD 501 550 ENSTTRP00000011022/1-646 FILMDAFEDL ENPPSSVLAV LRNRWLSDSF KETALATACW SVLKAKRRLL ENSP00000351138/1-593 FILMDAFEDL ENPPASVLAV LRNRWLSDSF KETALATACW SVLKAKRRLL ENSBTAP00000014090/1-593 FILMDAFEDL ENPPSSVLAV LRNRWLSDSF KETALATACW SVLKAKRRLL bmy_08596T0/1-432 FILMDAFEDL ENPPSSVLAV LRNRWLSDSF KETALATACW SVLKAKRRLL BACU016233/1-553 FILMDAFEDL ENPPSSVLAV LRNRWLSDSF KET------- ---------- 551 600 ENSTTRP00000011022/1-646 MXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX HQIVQYLRDM ENSP00000351138/1-593 MVPDGFISHF YSVSEHVSPV LAFGFLGPKP QLAEVCAFFK HQIVQYLRDM ENSBTAP00000014090/1-593 MVPDGFISHF YSVSEHVSPV LAFGFLGPKP QLSEVCAFFK HQIVQYLTDM bmy_08596T0/1-432 M--------- -----HVSPV LAFGFLGPKP QLSEVCAFFK HQIVQYLRDM BACU016233/1-553 -VPDGFISHF YSVSEHVSPV LAFGFLGPKP QLSEVCAFFK HQIVQYLRDM 601 650 ENSTTRP00000011022/1-646 FDLDNVRYTS VPALADDILQ LSRRRSEILL GYLGAPVASS IGVNGVLPRD ENSP00000351138/1-593 FDLDNVRYTS LPALADDILQ LSRRRSEILL GYLGVPAASS AGVNGALPRE ENSBTAP00000014090/1-593 FDLDNVRYTS VPALAEDILQ LSRRRSEILL GYLGVPAASS IGLNGVLPRE bmy_08596T0/1-432 FDLDNVRYTS VPALADDILQ LSRRRSEILL GYLGAPVASS IGLNGVLPRE BACU016233/1-553 FDLDNVRYTS VPALADDILQ LSRRRSEILL GYLGAPVASS IGLNGVLPRE 651 700 ENSTTRP00000011022/1-646 NGPPGELQ ENSP00000351138/1-593 NGPLGELQ ENSBTAP00000014090/1-593 NGPPEALQ bmy_08596T0/1-432 NGPSEELQ BACU016233/1-553 NGPPGELQ