KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 16:52:23 2014 Check: 00 .. Name: ENSTTRP00000013868/1-1492 Len: 1787 Check: 6182 Weight: 1.00 Name: bmy_12085T0/1-906 Len: 1787 Check: 9545 Weight: 1.00 Name: ENSP00000353401/1-1516 Len: 1787 Check: 47 Weight: 1.00 Name: ENSBTAP00000014098/1-1460 Len: 1787 Check: 9123 Weight: 1.00 // 1 50 ENSTTRP00000013868/1-1492 ---------- ---------- -RELDATATV LANRQDESEQ SRKRLIEQSR bmy_12085T0/1-906 ------MKPL LRMPQGWIPN GCCTRTGAGM LAALRESQRR AFNRYPPRCP ENSP00000353401/1-1516 MAANVGSMFQ YWKRFDLQQL QRELDATATV LANRQDESEQ SRKRLIEQSR ENSBTAP00000014098/1-1460 ---------- ---------- ---------- ---------- ---------- 51 100 ENSTTRP00000013868/1-1492 EFKKNTP--- ---------- ----EDLRKQ VAPLLKSFQG E--------- bmy_12085T0/1-906 QCSWGDPVVT EGNRAAFLVC ATEDKDLRKQ VAPLLKSFQG ETTVRWIATA ENSP00000353401/1-1516 EFKKNTP--- ---------- ----EDLRKQ VAPLLKSFQG E--------- ENSBTAP00000014098/1-1460 ---------- ---------- ---------- ---------- ---------- 101 150 ENSTTRP00000013868/1-1492 ---------- ---------- ------IDAL SKRSKEAEAA FLNVYKRLID bmy_12085T0/1-906 FLKLSMVGNY LLHPELPQSS MLQESPIDAL SKRSKEAEAA FLNVYKRLID ENSP00000353401/1-1516 ---------- ---------- ------IDAL SKRSKEAEAA FLNVYKRLID ENSBTAP00000014098/1-1460 ---------- ---------- ------IDAL SKRSKEAEAA FLNVYKRLID 151 200 ENSTTRP00000013868/1-1492 VPDPVPALDL GQQLQLKVQR LHDIETENQK LRETLEEYNK EFAEVKNQEV bmy_12085T0/1-906 VPDPVPALDL GQQLQLKVQR LHDIETENQK LRETLEEYNK EFAEVKNQEV ENSP00000353401/1-1516 VPDPVPALDL GQQLQLKVQR LHDIETENQK LRETLEEYNK EFAEVKNQEV ENSBTAP00000014098/1-1460 VPDPVPALDL GQQLQLKVQR LHDIETENQK LRETLEEYNK EFAEVKNQEV 201 250 ENSTTRP00000013868/1-1492 TIKALKEKIR EYEQTLKNQA ETIALEKEQK LQNDFAEKER KLQETQMSTT bmy_12085T0/1-906 TIKALKEKIR EYEQTLKNQA ETIALEKEQK LQNDFAEKER KLQETQMSTT ENSP00000353401/1-1516 TIKALKEKIR EYEQTLKNQA ETIALEKEQK LQNDFAEKER KLQETQMSTT ENSBTAP00000014098/1-1460 TIKALKEKIR EYEQTLKNQA ETIALEKEQK LQNDFAEKER KLQETQMSTT 251 300 ENSTTRP00000013868/1-1492 SKLEEAEHKV QTLQTALEKT RTELFDLKTK YDEEITAKAD EIEMIMTDLE bmy_12085T0/1-906 SKLEEAEHKV QTLQTALEKT RTELFDLKTK YDEEITAKAD EIEMIMTDLE ENSP00000353401/1-1516 SKLEEAEHKV QSLQTALEKT RTELFDLKTK YDEETTAKAD EIEMIMTDLE ENSBTAP00000014098/1-1460 SKLEEAEHKV QTLQTALEKT RTELFDLKTK YDEEITAKAD EIEMIMTDLE 301 350 ENSTTRP00000013868/1-1492 RANQRAEVAQ REAETLREQL LSANHSLQLA SQIQKAPDVE QAIEVLTRSS bmy_12085T0/1-906 RANQ------ ---------- ---------- ---------E QAIEVLTRSS ENSP00000353401/1-1516 RANQRAEVAQ REAETLREQL SSANHSLQLA SQIQKAPDVE QAIEVLTRSS ENSBTAP00000014098/1-1460 RANQRAEVAQ REAETLREQL SSANHSLQLA SQIQKAPDVE QAIEVLTRSS 351 400 ENSTTRP00000013868/1-1492 LEVELAAKER EIAQLVEDVQ RLQASLTKLR ENSASQISQL EQQLSAKNST bmy_12085T0/1-906 LEVELAAKER EIAQLVEDVQ RLQASLTKLR ENSASQISQL EQQLSAKNST ENSP00000353401/1-1516 LEVELAAKER EIAQLVEDVQ RLQASLTKLR ENSASQISQL EQQLSAKNST ENSBTAP00000014098/1-1460 LEAELAAKER EIAQLVEDVQ RLQANLSKLR ENSASQISQL EQQLSAKNST 401 450 ENSTTRP00000013868/1-1492 LKQLEEKLKG QADYEEVKKE LNILKSMEFA PAEGAGTQDS SRPLEVLLLE bmy_12085T0/1-906 LKQLEEKLKG QADYEEVKKE LNILKSMEFA PAEGAGTQDS SRPLEVLLLE ENSP00000353401/1-1516 LKQLEEKLKG QADYEEVKKE LNILKSMEFA PSEGAGTQDA AKPLEVLLLE ENSBTAP00000014098/1-1460 LKQLEEKLKG QADYEEVKKE LNILKSMEFA PAEGAGTQDA SRPLEVLLLE 451 500 ENSTTRP00000013868/1-1492 KNRSLQSENA ALRISNSDLS XXXXXEREDQ PESRRPGPLP ASPPSQLPRN bmy_12085T0/1-906 KNRSLQSENA ALRISNSDLS G--------- ---------- --------RL ENSP00000353401/1-1516 KNRSLQSENA ALRISNSDLS GSARRKGKDQ PESRRPGSLP APPPSQLPRN ENSBTAP00000014098/1-1460 KNRSLQSENA ALRISNSDLS GSARRKGKDQ PESRRPGPLP ASPPSQLPRN 501 550 ENSTTRP00000013868/1-1492 TGEQASNTNG THQFSPAGLT QDFFSSSLAS PSLPLASTGK FALNSLLQRQ bmy_12085T0/1-906 TGSRV----- --RLAPPGVE EE-------- ---------- ---------- ENSP00000353401/1-1516 PGEQASNTNG THQFSPAGLS QDFFSSSLAS PSLPLASTGK FALNSLLQRQ ENSBTAP00000014098/1-1460 TGEQASNTNG THQFSPAGLT QDFFSSSLAS PSLPLASTGK FALNSLLQRQ 551 600 ENSTTRP00000013868/1-1492 LMQSFYSKAM QEAGSTSMIF STGPYSTNSI SSQSPLQQSP DVNGMAPSPS bmy_12085T0/1-906 ---------- ---------- ---------- ------EDKP ---------- ENSP00000353401/1-1516 LMQSFYSKAM QEAGSTSMIF STGPYSTNSI SSQSPLQQSP DVNGMAPSPS ENSBTAP00000014098/1-1460 LMQSFYSKAM QEAGSTSMIF STGPYSTNSI SSQSPLQQSP DVNGMAPSPS 601 650 ENSTTRP00000013868/1-1492 QSESAGSVSE GEEMDTAEIA RQVKEQLIKH NIGQRIFGHY VLGLSQGSVS bmy_12085T0/1-906 QSESAGSISE GEEIDTAEIA RQVKEQLIKH NIGQRIFGHY VLGLSQG--- ENSP00000353401/1-1516 QSESAGSVSE GEEMDTAEIA RQVKEQLIKH NIGQRIFGHY VLGLSQGSVS ENSBTAP00000014098/1-1460 QSESAGSVSE GEEIDTAEIA RQVKEQLIKH NIGQRIFGHY VLGLSQGSVS 651 700 ENSTTRP00000013868/1-1492 EILARPKPWN KLTVRGKEPF HKMKQFLSDE QNILALRSIQ GRQRENPGQS bmy_12085T0/1-906 ------KPF- --LPRGRGTC CEVA------ ---------- ---------- ENSP00000353401/1-1516 EILARPKPWN KLTVRGKEPF HKMKQFLSDE QNILALRSIQ GRQRENPGQS ENSBTAP00000014098/1-1460 EILARPKPWN KLTVRGKEPF HKMKQFLSDE QNILALRSIQ GRQRENPGQS 701 750 ENSTTRP00000013868/1-1492 LNRLFQEVPK RRNGSEGNIT TRIRASETGS DEAIKSILEQ AKRELQVQKT bmy_12085T0/1-906 ---------- -RTAGTGNIT TRIRASETGS DEAIKSILEQ AKRELQVQKT ENSP00000353401/1-1516 LNRLFQEVPK RRNGSEGNIT TRIRASETGS DEAIKSILEQ AKRELQVQKT ENSBTAP00000014098/1-1460 LNRLFQEVPK RRNGSEGNIT TRIRASETGS DEAIKSILEQ AKRELQVQKT 751 800 ENSTTRP00000013868/1-1492 AEPAQPSSAS SSGNSDDAIR SILQQARREM EAQQAALDPA LKPAPLSQTD bmy_12085T0/1-906 AEPAQPSSAS XSGNSDDAIR SILQQARREM EAQQAALDPA LKPAPLSQTD ENSP00000353401/1-1516 AEPAQPSSAS GSGNSDDAIR SILQQARREM EAQQAALDPA LKQAPLSQSD ENSBTAP00000014098/1-1460 AEPAQPSSAS SGGSADDAIR SILQQARREM EAQQAALEPA LKPAPPSQTD 801 850 ENSTTRP00000013868/1-1492 IAILTPKLMP PSPMSSVSGY SPLAVSLKKP PSAPDSSAPA LPNPPVLKKE bmy_12085T0/1-906 IAILTPKLIP PSPMSSVSGY SPLAVSLKKP PSAPDSSAPA LPNPPALKKE ENSP00000353401/1-1516 ITILTPKLLS TSPMPTVSSY PPLAISLKKP SAAPEAGASA LPNPPALKKE ENSBTAP00000014098/1-1460 ITLLTPKLIP ASPMSSVSSY SPLAVSLKKP PSAPDASAPA LPNPPALKKE 851 900 ENSTTRP00000013868/1-1492 SQDVPGPDLP GAAD-SAQGV LRHVKSELGR SGVWKDHWWS AVQPERKSSA bmy_12085T0/1-906 SQDVPGPDLP GAAD-SAQGV LRHVKSELGR SGVWKDHWWS AVQPERKSSA ENSP00000353401/1-1516 AQDAPGLDPQ GAAD-CAQGV LRQVKNEVGR SGAWKDHWWS AVQPERRNAA ENSBTAP00000014098/1-1460 SQDAPGPDLP GAADPTTQGV LRHVKSELGR GTVWKDHWWS AVQPERKSSA 901 950 ENSTTRP00000013868/1-1492 PPEDPKAEEA SGGKEKGGGG SGG--QARAE RGQLQGPSSS EYWKDWPSAE bmy_12085T0/1-906 PPEDPKAEEA SGGKEKGGGG SGG--QARAE RGQLQGPSSS EYWKDWPSAE ENSP00000353401/1-1516 SSEEAKAEET GGGKEKGSGG SGGGSQPRAE RSQLQGPSSS EYWKEWPSAE ENSBTAP00000014098/1-1460 PPEDPKAEDA SSSKEKGSGG -----QTRAE RSQLQGPSSS EYWKDWPSAE 951 1000 ENSTTRP00000013868/1-1492 SPYSQSSELS LTGASRSETP QNSPLPSSPI VPLSKPTKPS VPPLTPEQYE bmy_12085T0/1-906 SPYSQSSELS LTGASRSETP QNSPLPSSPI VPLSKPTKPS VPPLTPEQYE ENSP00000353401/1-1516 SPYSQSSELS LTGASRSETP QNSPLPSSPI VPMSKPTKPS VPPLTPEQYE ENSBTAP00000014098/1-1460 SPYSQSSELS LTGASRSETP QNSPLPSSPI VPLSKPTKPS VPPLTPEQYE 1001 1050 ENSTTRP00000013868/1-1492 IYMYQEVDTI ELTRQVKEKL AKNGICQRIF GEKVLGLSQG SVSDMLSRPK bmy_12085T0/1-906 IYMYQEVDTI ELTRQVKEKL AKNGICQRIF GEKVLGLSQG SVSDMLSRPK ENSP00000353401/1-1516 VYMYQEVDTI ELTRQVKEKL AKNGICQRIF GEKVLGLSQG SVSDMLSRPK ENSBTAP00000014098/1-1460 IYMYQEVDTI ELTRQVKEKL AKNGICQRIF GEKVLGLSQG SVSDMLSRPK 1051 1100 ENSTTRP00000013868/1-1492 PWSKLTQKGR EPFIRMQLWL NGELGQGVLP VQGQQQGPVL HSMTSLQDPL bmy_12085T0/1-906 PWSKLTQKGR EPFIRMQLWL NGELGQGVLP VQGQQQGPVL HSMTSLQDPL ENSP00000353401/1-1516 PWSKLTQKGR EPFIRMQLWL NGELGQGVLP VQGQQQGPVL HSVTSLQDPL ENSBTAP00000014098/1-1460 PWSKLTQKGR EPFIRMQLWL NGELGQGVLP VQGQQQGPVL HSVTSLQDPL 1101 1150 ENSTTRP00000013868/1-1492 QQGCVSSEST PKTSASCSPA PESPMSSSES VKSLTELVQQ PCPPIETSKD bmy_12085T0/1-906 QQGCVSS--- ---------- ---------- ---------- ---------- ENSP00000353401/1-1516 QQGCVSSEST PKTSASCSPA PESPMSSSES VKSLTELVQQ PCPPIEASKD ENSBTAP00000014098/1-1460 QQGCVSSEST PKTSASCSPA PESPMSSSES VKSLTELVQQ PCPPIETSKD 1151 1200 ENSTTRP00000013868/1-1492 GKPPEPSDPP ASDSQPTTPL PLSGHSALSI QELVAMSPEL DTYGITKRVK bmy_12085T0/1-906 ---------- ---------- ---------- ---------- ---------- ENSP00000353401/1-1516 SKPPEPSDPP ASDSQPTTPL PLSGHSALSI QELVAMSPEL DTYGITKRVK ENSBTAP00000014098/1-1460 SKPPEPSDPP ASDSQPATPL PLSGHSALSI QELVAMSPEL DTYGITKRVK 1201 1250 ENSTTRP00000013868/1-1492 EVLTDNNLGQ RLFGETILGL TQGSVSDLLA RPKPWHKLSL KGREPFVRMQ bmy_12085T0/1-906 ---------- ---------- ---------- ---------- ---------- ENSP00000353401/1-1516 EVLTDNNLGQ RLFGETILGL TQGSVSDLLA RPKPWHKLSL KGREPFVRMQ ENSBTAP00000014098/1-1460 EVLTDNNLGQ RLFGETILGL TQGSVSDLLA RPKPWHKLSL KGREPFVRMQ 1251 1300 ENSTTRP00000013868/1-1492 LWLNDPNNVE KLMDMKRMEK KAYMKRRHSS VSDSQPCEPP STGIDYSQGA bmy_12085T0/1-906 ---------- ---------- ---------- ---------- ---------- ENSP00000353401/1-1516 LWLNDPNNVE KLMDMKRMEK KAYMKRRHSS VSDSQPCEPP SVGTEYSQGA ENSBTAP00000014098/1-1460 LWLNDPNNVE KLMDMKRMEK KAYMKRRHSS VSDSQPCEPP SVGIDYSQGA 1301 1350 ENSTTRP00000013868/1-1492 SPQPQHQLKK PRVVLAPEEK EALKRAYQQK PYPSPKTIEE LATQLNLKTS bmy_12085T0/1-906 ---------- ---------- ---------- ---------- ---------- ENSP00000353401/1-1516 SPQPQHQLKK PRVVLAPEEK EALKRAYQQK PYPSPKTIED LATQLNLKTS ENSBTAP00000014098/1-1460 SPQPQHQLKK PRVVLAPEEK EALKRAYQQK PYPSPKTIEE LATQLNLKTS 1351 1400 ENSTTRP00000013868/1-1492 TVINWFHNYX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_12085T0/1-906 ---------- ---------- ---------- ---------- ---------- ENSP00000353401/1-1516 TVINWFHNY- ---------- ---------- ---------- ---------- ENSBTAP00000014098/1-1460 TVINWFHNY- ---------- ---------- ---------- ---------- 1401 1450 ENSTTRP00000013868/1-1492 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_12085T0/1-906 ---------- ---------- ---------- ---------- ---------- ENSP00000353401/1-1516 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000014098/1-1460 ---------- ---------- ---------- ---------- ---------- 1451 1500 ENSTTRP00000013868/1-1492 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_12085T0/1-906 ---------- ---------- ---------- ---------- ---------- ENSP00000353401/1-1516 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000014098/1-1460 ---------- ---------- ---------- ---------- ---------- 1501 1550 ENSTTRP00000013868/1-1492 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_12085T0/1-906 ---------- ---------- ---------- ---------- ---------- ENSP00000353401/1-1516 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000014098/1-1460 ---------- ---------- ---------- ---------- ---------- 1551 1600 ENSTTRP00000013868/1-1492 XXXRL----- ---------- ---------- ---------- ---------- bmy_12085T0/1-906 ---------- ---------- ---------- ---------- ---------- ENSP00000353401/1-1516 -RSRIRRELF IEEIQAGSQG QAGASDSPSA RSGRAAPSSE GDSCDGVEAT ENSBTAP00000014098/1-1460 -RSRIRRELF IEEIQAGSQG QAGASDSPSA RSGRAAPSSE GDSCDGVEAA 1601 1650 ENSTTRP00000013868/1-1492 ---------- ---------- ---------- ---------- ---------- bmy_12085T0/1-906 ---------- ---------- ---------- ---------- ---------- ENSP00000353401/1-1516 EGPGSADTEE P-------KS QGEA------ --EREEVPRP AEQTEPPPSG ENSBTAP00000014098/1-1460 EGPGAADAEE SGGPAAAAKS QGGPAEAAAA PEEREEAPRP AEKAEPPPSG 1651 1700 ENSTTRP00000013868/1-1492 ---------- ---------- ---------- ---------- ---------- bmy_12085T0/1-906 ---------- ---------- ---------- ---------- ---------- ENSP00000353401/1-1516 TPGPDDARDD DH-------E GGPVEGPGPL PSPASATATA APAAPEDAAT ENSBTAP00000014098/1-1460 TPVPDAAADE GRPRATAPPP EGPADGPGPV PNPAAA---A APAAGEDAAT 1701 1750 ENSTTRP00000013868/1-1492 ---------- ---------- ---------- ---------- ---------- bmy_12085T0/1-906 ---------- ---------- ---------- ---------- ---------- ENSP00000353401/1-1516 SAAAAPGEGP A-APSSAPPP SNSSSSSAP- --RRPSSLQS LFGLPEAAGA ENSBTAP00000014098/1-1460 S-AAPPGEGP CRARDGADRS SALPSTSAPA AARRPSSLQS LFGLPEAAGA 1751 1800 ENSTTRP00000013868/1-1492 ---------- ---------- ----EAASRE EPIEWEF bmy_12085T0/1-906 ---------- ---------- ---------- ------- ENSP00000353401/1-1516 RDSRDNPLRK KKAANLNSII HRLEKAASRE EPIEWEF ENSBTAP00000014098/1-1460 RDSRDNPLRK KKAANLNSII HRLEKAASRE EPIEWEF