KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:52:25 2014 Check: 00 .. Name: ENSP00000251343/1-678 Len: 685 Check: 8112 Weight: 1.00 Name: ENSBTAP00000014108/1-676 Len: 685 Check: 2149 Weight: 1.00 Name: bmy_16951T0/1-535 Len: 685 Check: 7304 Weight: 1.00 Name: ENSTTRP00000011929/1-669 Len: 685 Check: 6382 Weight: 1.00 Name: BACU008682/1-670 Len: 685 Check: 7747 Weight: 1.00 // 1 50 ENSP00000251343/1-678 MPTWGARPAS PDRFAVSAEA ENKVREQQPH VERIFSVGVS VLPKDCPDNP ENSBTAP00000014108/1-676 MPTWGAGSPS PDRFAVSAEA EDKVREQLPR VERIFRVGMS VLPKDCPENP bmy_16951T0/1-535 MPTWGAGSPS PDRFAVSAEA EDKVREQQPH VERIFRVGMS VLPKDCPENP ENSTTRP00000011929/1-669 MPTWGAGSPS PDRFAVSAEA EDKVREQQPY VERIFRVGMS VLPKDCPENP BACU008682/1-670 MPTWGAGSPS PDRFAVSAEA EDKVREQQPH VERIFRVGMS VLPKDCPENP 51 100 ENSP00000251343/1-678 HIWLQLEGPK ENASRAKEYL KGLCSPELQD EIHYPPKLHC IFLGAQGFFL ENSBTAP00000014108/1-676 HIWLQLEGPK ENASRAKEYL KGLCSPELQN EIHYPPKLHC IFLGAQGFFL bmy_16951T0/1-535 HIWLQLEGPK ENASRAKEYL KGLCSPELQN EIHYPPKLHC IFLGAQGFFL ENSTTRP00000011929/1-669 HIWLQLEGPK ENASRAKEYL KGLCSPELQN EIHYPPKLHC IFLGAQGFFL BACU008682/1-670 HIWLQLEGPK ENASRAKEYL KGLCSPELQN EIHYPPKLHC IFLGAQGFFL 101 150 ENSP00000251343/1-678 DCLAWSTSAH LVPRAPGSLM ISGLTEAFVM AQSRVEELAE RLSWDFTPGP ENSBTAP00000014108/1-676 DCLTWSTSAH LVPGVPGSLM VSGLTEAFVM VQSRVEELVE RLSWDFRLGP bmy_16951T0/1-535 DCLTWSTSAH LVPGAPGSLM VSGLTEAFVM VQSRVEELVE RLSWDFRLGP ENSTTRP00000011929/1-669 DCLTWSTSAH LVPGAPGSLM VSGLTEAFVM VQSRVEELVE RLSWDFRLGP BACU008682/1-670 DCLTWSTSAH LVPGVPGSLM VSGLTEAFVM VQSRVEELVE RLSWDFRLGP 151 200 ENSP00000251343/1-678 SSGASQCTGV LRDFSALLQS PGDAHREALL QLPLAVQEEL LSLVQEASSG ENSBTAP00000014108/1-676 SPGASQCAGV LREFSALLQA RGDAHTEALL QLPQAVQEEL LSLVQEASRG bmy_16951T0/1-535 SPGTSQCAGV LREFSSLLQS RGDAHTEALL QLPLAVQEEL LSLVQEASRG ENSTTRP00000011929/1-669 SPGASQCAGV LREFSSLLQS RGDAHTEALL QLPLAVQEEL LSLVQEASRG BACU008682/1-670 SPGASQCAGV LREFSFLLQS RGDAHTEALL QLPLAVQEEL LSLVQEASRG 201 250 ENSP00000251343/1-678 QGPGALASWE GRSSALLGAQ CQGVRAPPSD GRESLDTGSM GPGDCRGARG ENSBTAP00000014108/1-676 QGPQAFPSWG WGGPGPLGAQ QQGVRTPLGD GGVSLDTGPT GWQESRGER- bmy_16951T0/1-535 QGPQAFPSWE WGSPGLLGAQ HQGVRSPLSD GRESLDTGPA GWQESRGER- ENSTTRP00000011929/1-669 QGPQAFPSWE WGSPGLLGAQ HQGVRSPLSD SRESLDTGPA G-GRSRGER- BACU008682/1-670 QGPQAFPSWE WGSPGLLGAQ HQGVRSPLSD SRESLDTGPA GWQESRGER- 251 300 ENSP00000251343/1-678 DTYAVEKEGG KQGGPREMDW GWKELPGEEA WEREVALRPQ ------SVGG ENSBTAP00000014108/1-676 --HAVEKEGT KQGGAREMDL GWKEWPGEEA WERQVAFRPQ SGGGEASGGG bmy_16951T0/1-535 --RAMEKEGT KHGGPREMDL GWKEWPGEEA WERQVAFRPQ ------SGEG ENSTTRP00000011929/1-669 --CAMEKEGT KHGGPREMDL GWKEWPGEEA SERQVAFRPQ ------SGGG BACU008682/1-670 --RAMEKEGT KHGGPGEMDL GWKEWPREEA WERQVAFRPQ ------SGGG 301 350 ENSP00000251343/1-678 GARESAPLKG KALGKEEIAL GGGGFCVHRE PPGAHGSCHR AAQSRGASLL ENSBTAP00000014108/1-676 EAGQAGPPKG KALGKEGVPQ ERGRLGVQGQ PPSTQGPYQR ASQLRGASLL bmy_16951T0/1-535 EAGQAVPLKG KALGKEGVPQ ERGRFWVQGE PPGTQGPCQK AAQPRGASLL ENSTTRP00000011929/1-669 EAGQAVPLKG KALGKEGVPQ ERGRFWVQGA PPGTQGPCQK AAQPRGASLL BACU008682/1-670 EAGQAVPLKG KALGKEGVPQ EGGRFWVQGE PPGTQGPCQK AAQPRGASLL 351 400 ENSP00000251343/1-678 QRLHNGNASP PRVPSPPPAP EPPWHCGDRG DCGDRGDVGD RGDKQQGMAR ENSBTAP00000014108/1-676 QRLHNGEASP PRVPSPPPAP EPPWHCGDRG DR------GD RADKQLVVAR bmy_16951T0/1-535 QRLHNGEASP PRVPSPPPAP EPPWHCGDRG DR------GD RADKQQVVAR ENSTTRP00000011929/1-669 QRLHNGEASP PRVPSPPPAP EPPWHCGDRG DR------GD RADKQQVVAR BACU008682/1-670 QRLHNGEASP PRVPSPPPAP EPPWHCGDRG DR------GD RADKQQVVAR 401 450 ENSP00000251343/1-678 GRGPQWKRGA RGGNLVTGTQ RFKEALQDPF TLCLANVPGQ PDLRHIVIDG ENSBTAP00000014108/1-676 GRGSPWKRGT RGGNLVTGTQ RFQEALQDPF TLCLANVPGK PDLRHIVIDG bmy_16951T0/1-535 GRGSPWKRGT RGGNLVTGTQ RFQEALQDPF TLCLANVPGK PDLRHIVIDG ENSTTRP00000011929/1-669 GRGSPWKRGT RGGNLVTGTQ RFQEALQDPF TLCLANVPGK PDLRHIVIDG BACU008682/1-670 GRGSPWKRGT RGGNLVTGTQ RFQEALQDPF TLCLANVPGK PDLRHIVIDG 451 500 ENSP00000251343/1-678 SNVAMVHGLQ HYFSSRGIAI AVQYFWDRGH RDITVFVPQW RFSKDAKVRE ENSBTAP00000014108/1-676 SNVAMVHGLQ HYFSSRGIAI AVQYFWDRGH RDITVFVPQW RFSKDSKVRE bmy_16951T0/1-535 SNVAMVHGLQ HYFSSRGIAI AVQYFWDRGH RDITVFVPQW RFSRDSKVRE ENSTTRP00000011929/1-669 SNVAMVHGLQ HYFSSRGIAI AVQYFWDRGH RDITVFVPQW RFSRDSKVRE BACU008682/1-670 SNVAMVHGLQ HYFSSRGIAI AVQYFWDRGH RDITVFVPQW RFSRDSKVRE 501 550 ENSP00000251343/1-678 SHFLQKLYSL SLLSLTPSRV MDGKRISSYD DRFMVKLAEE TDGIIVSNDQ ENSBTAP00000014108/1-676 GHFLHKLYSL SLLSLTPSRV LDGKRISSYD DRFMVKLAEE TDGIIVSNDQ bmy_16951T0/1-535 GHFLHKLYSL SLLSLTPSRV LDGKRISSYD DRYLLL---- ---------- ENSTTRP00000011929/1-669 SHFLHKLHSL SLLSLTPSRV LDGKRISSYD DRFMVKLAEE TDGIIVSNDQ BACU008682/1-670 GHFLHKLYSL SLLSLTPSRV LDGKRISSYD DRFMVKLAEE TDGIIVSNDQ 551 600 ENSP00000251343/1-678 FRDLAEESEK WMAIIRERLL PFTFVGNLFM VPDDPLGRNG PTLDEFLKKP ENSBTAP00000014108/1-676 FRDLAEESEK WMAIIRERLL PFTFVGNLFM VPDDPLGRNG PTLDEFLKKP bmy_16951T0/1-535 ---------S W--------- ---------- ---------- ---------- ENSTTRP00000011929/1-669 FRDLAEESEK WMAIIRERLL PFTFVGNLFM VPDDPLGRNG PTLDEFLKKP BACU008682/1-670 FRDLAEESEK WMAIIRERLL PFTFVGNLFM VPDDPLGRNG PTLDEFLKKP 601 650 ENSP00000251343/1-678 ARTQGSSKAQ HPSRGFAEHG KQQQGR-EEE KGSGGIRKTR ETERLRRQLL ENSBTAP00000014108/1-676 VRAPGSSKPQ QSARGVTEHS NQQQGRKEEE KGNGGIRKTR ETERLRRQLL bmy_16951T0/1-535 ------SQAR HSRSQVGD-- ---------- ---------- ---------- ENSTTRP00000011929/1-669 VRAQGSSKAQ HSAKGFTEHS NQQQGRKEEE KGSGGIRKTR ETERLRRQLL BACU008682/1-670 VRAQGSSKAK HSAKGFTEHS NQQQGRKEEE KGSGGIRKTR ETERLRRQLL 651 700 ENSP00000251343/1-678 EVFWGQDHKV DFILQREPYC RDINQLSEAL LSLNF ENSBTAP00000014108/1-676 EVFWGQDHKV DFILQREPYC RDINQLSEAL LSLNF bmy_16951T0/1-535 ---------- ---------- ---------- ----- ENSTTRP00000011929/1-669 EVFWGQDHKV DFILQREPYC RDINQLSEAL LSLNF BACU008682/1-670 EVFWGQDHKV DFILQREPYC RDINQLSEAL LSLNF