KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:52:27 2014 Check: 00 .. Name: ENSP00000321179/1-1052 Len: 1100 Check: 5621 Weight: 1.00 Name: ENSBTAP00000014122/1-1051 Len: 1100 Check: 909 Weight: 1.00 Name: ENSTTRP00000005849/1-1048 Len: 1100 Check: 5537 Weight: 1.00 Name: bmy_18836T0/1-1029 Len: 1100 Check: 7554 Weight: 1.00 Name: BACU019131/1-1045 Len: 1100 Check: 8687 Weight: 1.00 // 1 50 ENSP00000321179/1-1052 ---------M MQATAVVETA SGKGYHSNGG NLQKDKPSNP KKENLLLSSN ENSBTAP00000014122/1-1051 ---------- MQATAVVETA SNKGYNNNGR NIQKDEPSHH KKEN-LLSPN ENSTTRP00000005849/1-1048 ---------V MQATEVVETA SGKGYHSNG- NIQKDEPSNR QKEN-LLSPD bmy_18836T0/1-1029 ---------- MQATAVVETA SGKGYHSNG- NIQ------- ---------- BACU019131/1-1045 MFLLTFYPFF LKSDEPSNRK KEDLL----- ---------- -------SPN 51 100 ENSP00000321179/1-1052 GCDEVKLTFP DDDWNSSTLE QRANNKEISN IDKMDLLEPF FSVSQDTNTE ENSBTAP00000014122/1-1051 GCKEAKLTFL NDYYDSLALE KRANDKEISN IDKIDLLEPS FTMSPDTNIE ENSTTRP00000005849/1-1048 GCKEAKLTFL DYDWDSLALE KRANDKEISN IDKIELLEPS FTVSPNTKME bmy_18836T0/1-1029 --KEAKLTFL DYDWDSLALE KRANDKEISS IDKIELLEPS FTVSPNTKIE BACU019131/1-1045 GCKEAKLTFL DNDWDSLALE KRANDKAISS IDKIELSEPS FTVSPDTKIE 101 150 ENSP00000321179/1-1052 STQFQSSELE DSTDYAFLNK TYSIPYSESK LKKESLTPLS SELDPEVQKK ENSBTAP00000014122/1-1051 SAHSQSSEFE DNIDYAFLNE TYTIHYSESK LKSESLIHLN SELDSEMQKR ENSTTRP00000005849/1-1048 STHSQSSEFE GSIDSAFLNE IYSIHHSESK LKNESLIHLN SEFDYEMQKR bmy_18836T0/1-1029 STHSQSSEFE GSIDNAFLNE TYCIHHSESK LKNESLIHLN SELDYEMQKR BACU019131/1-1045 STHSQSSEFE GSIDNAFLNE TYCIHHSESK LKNESLIHLN SELDYEMQKR 151 200 ENSP00000321179/1-1052 EEVFFNILEH Q-DKTVGLER IYNISDANYR ESAEDTQKHD TDEDSQQEYH ENSBTAP00000014122/1-1051 EEVFFDILEH QGDKITDLER IYKISYDDYK KTAEDVQKPD IDEDSQQEYH ENSTTRP00000005849/1-1048 KEVSFDILNH RGNKTVGLER IYRISDDD-- --SEDAQKRD LDDDSQQEYH bmy_18836T0/1-1029 KEVFFGILNH RGNKTVGSEX IYKISDDDYK ETPEDVQKXD LDDDSQQEYH BACU019131/1-1045 KEVFFGILNH RGNKTVGSER IYKISDDDYK ETPEDVQKRD LDDDSQQEYH 201 250 ENSP00000321179/1-1052 SAEEQEYISN HLSFDQTKAL DISNPEVVEL GNSGYEVKCA SNVEDNRVNS ENSBTAP00000014122/1-1051 SAEEQECINN HLSFDQAKTL DIPNLEVLGL RNSGCEVKCV SNLEDSHVKL ENSTTRP00000005849/1-1048 SAEEQEYIEN HLSFDQAKTL NISNLEVWGL RSSGYGVNCA SNLEDNHVKL bmy_18836T0/1-1029 SVEEQEYINN HLSFDQTKTL NISNLEVLGL XSSGYGVNCA SNLEDNHVXL BACU019131/1-1045 SVEEQEYINN HLPFDQTKTL NISNLEVLGL RSSGYGVNCA SNLEDNHVKL 251 300 ENSP00000321179/1-1052 GSGSIISFDS LDVYGQEESL HVSKFQNSVM LREYHDLKHE KYKEQETNSM ENSBTAP00000014122/1-1051 ESNSSISLDS VDVYGQEDSP SVSKLQNSVT LRAFHEPKYE KCKEQGTSLM ENSTTRP00000005849/1-1048 ESNSSTSLDS ADVYGQEGSP HVSKFQNSVM LREYHEPKHG KCMEQDTSLM bmy_18836T0/1-1029 ESNSSTSLDS ADVYGQEGSP HVSKFQNSVM LREYHEPKHG KCMEQDTSLM BACU019131/1-1045 KSNSSTSLDS ADVYGQEGSP HVSKFQNSVM LREYHEPKHG KCMEQDTSLM 301 350 ENSP00000321179/1-1052 YHTVFDGSVL RSNSPGNQES QSKSGSLSPQ KVLKMKIYTE NMKSQINEGK ENSBTAP00000014122/1-1051 LHTVLDEIIL RSSHLEHKES ESK-GFLNPQ KALKTKIYTH KVNPQLTESK ENSTTRP00000005849/1-1048 YHTVFDAIVL KGSPLEHQES QSKSGFLNPQ KALKTKIYTG KVKAQVTKSK bmy_18836T0/1-1029 YHTVFDEIVL KSSPLEHQES QSKSGFLNPQ KALKTKICTG KVKSQITKSK BACU019131/1-1045 YHTVFDEIVL KSSPLEHQGS QSKSGFLNPQ KALKTKICTG KVKSQITKSK 351 400 ENSP00000321179/1-1052 DFCGNKIVEN KILLHLENPS TLPQDKALET LLQPCKDCQT SWTSVFDDSI ENSBTAP00000014122/1-1051 DSIGNVIVED KMLQHLDNPG TLPQDKHLET LLQPCKDCQT S--SVFDDSV ENSTTRP00000005849/1-1048 DFCGNSVVEK KMLQHLENPS TLPQDKVLET LLQPYKDRQS SWTSIFDDSV bmy_18836T0/1-1029 DFCGNSVVEK KMLQHLENPS TLPQDKDLET LLQPCKDCQT SWTSIFDDSX BACU019131/1-1045 DFCGNSVVEK KMLQHLENPS TLPQDKDLET LLQPCKDCQT SWTSVFDDSV 401 450 ENSP00000321179/1-1052 ISACGY--YE SLQNTADSAL DFSAMLPKIA VRDNQAIEDN TSLKVAHSST ENSBTAP00000014122/1-1051 ISASGYSHYE SLQSTPNPAL DVSITLPRSA IRGNQAVEES GSLKVANGNT ENSTTRP00000005849/1-1048 ISAC----YK SLENTPNPAL DFSVTLPRSA IRDNQAIEEG SALRAANGNT bmy_18836T0/1-1029 ISACGYSXYK SLQNTPNPAL DFSVTLPRSA IRDNQAIEEG SALKAANGXT BACU019131/1-1045 ISACGYSRYK SLQNTPNPAL DFSVTLPRSA IRDNQAIEEG SSLKAANGNT 451 500 ENSP00000321179/1-1052 TKKTCFHNIG EMCTKSLTDA ASCTVTINQT VDVSTDFRAC FTTSRATSAR ENSBTAP00000014122/1-1051 ISKAHFHNME GPCPKSETDA AGCTVTVDQT VDVSTDFRAC FTASRATSAR ENSTTRP00000005849/1-1048 TNKACFHHME GPCPESVTDV ASCTVTVNQT VDVSTDFRAC FTTSRATSTR bmy_18836T0/1-1029 TNKACFHHME GPCPKSVTDV PSCTVTVNQT VDVSTDFRAC FTTSRATSAR BACU019131/1-1045 TNKACFHHME GPCPKSVTDV PSCTVTVNQT VDVSTDFRAC FTTSRATSAR 501 550 ENSP00000321179/1-1052 PSVVSTSSNT EITMMNKKRP DEWQNEKQKS VACSTDWSYS EDCIDTQMAI ENSBTAP00000014122/1-1051 SSVVSTSSNT EITMMNKKRP SEWQSEKQRS VACNTDWSYI QDTEDPQMAM ENSTTRP00000005849/1-1048 SSVVSTSSNT EITMINKKRP DEWQSEK-RS VACNTDWAYS QDNEDPQMAM bmy_18836T0/1-1029 SSVISTSSNT EITMMNKKWP GEWQSEK-RS VACNTDWAYS QDNEDPQMAM BACU019131/1-1045 SSVVSTSSNT EITMMNKKWP GEWQSEK-RS VACNTDWAYS QDNEDPQMAM 551 600 ENSP00000321179/1-1052 TKGS-GKSLS VDSLKPNGNF LNKDFLELRK ACGITDLKKH PEREFQLFKD ENSBTAP00000014122/1-1051 TKGPTGKSLS VDNLKPNGNV LNKDSLEL-K TFEFTDLKKH SESMLQI--Q ENSTTRP00000005849/1-1048 TKGSLGKSVS VDSLKPKGNF LNKDSLELRK TFDFTDLKKH SEREPQLSKE bmy_18836T0/1-1029 TKGSLGKSLS VDSLKPKGDF LNKDSLELRK TFDFTDLKKH SEREPQLSKE BACU019131/1-1045 TKGSLGKSLS VDSLKPKGNF LNKDSLELRK TFDFTDLKKH SEREPQLSKE 601 650 ENSP00000321179/1-1052 TEKDLPSMCC QKIMQRAIKA ELHLLNVHYQ MCRRHCCDIY KLVMENREGL ENSBTAP00000014122/1-1051 VEKNLPSKCC QQIMQRAIQA ESHLLNVHYQ LCHRHCSDIY RLVMEDREGL ENSTTRP00000005849/1-1048 MEKNLPSKCC QQIMQRAIKA ELHLLNVHYQ MCHHHCSDIY KLVMENREGL bmy_18836T0/1-1029 MEKNLPSKCC QQIMQRAIKA ELHLLNVHYQ M--------- ---------- BACU019131/1-1045 MEKNLPSKCC QQIMQRAIKA ELHLLNVRYQ MCHHHCSDIY KLVMENREGL 651 700 ENSP00000321179/1-1052 NMNLSSNSAK KELGSALLSL LGDLKVRYVT LKEKIHKGIP LEELPPLSLE ENSBTAP00000014122/1-1051 NRNLSSNSTR KELGSALLSV LGDLKVRYMN LKEKINKGIP LEELPPLSIE ENSTTRP00000005849/1-1048 NRNLSSNSTK KELGSALLTV LEDLKVRYVN LKEKINKGIP LEELPPLSVE bmy_18836T0/1-1029 --NLSSNSTK KELGSALLSV LEDLKVRYVN LKEKINKGIP LEELPPLSVE BACU019131/1-1045 NRNLSSNSTK KELGSALLSV LEDLKVRYVN LKEKINKGIP LEELPPLSVE 701 750 ENSP00000321179/1-1052 SKLLSTFSTF ASRLMKKETH VFSEADAEQD NQRAHDVDVS SNLKKTLSQM ENSBTAP00000014122/1-1051 SRLLSAFSTF ASRLMKEESH IFSGADSELD NQSTRDV-GS SSLKKTLSQT ENSTTRP00000005849/1-1048 SKLLSTFSAF ASRLMKEESH IFSGADSELD NQSTRDVDGS SSLKKTLSQM bmy_18836T0/1-1029 SKLLSTFSAF ASRLMKEESH TFSGADSELD NQSTRDVDGS SSLKKTLSQ- BACU019131/1-1045 SKLLSTFSAF ASRLMKEESH TFSGADSELD NQSTRDVDGS SSLKKTLSQM 751 800 ENSP00000321179/1-1052 SLSSDNSHAT QNISPKKDDF KNGDINADFS QLKLGDKDCR HYQETSEDWS ENSBTAP00000014122/1-1051 SLLLDNGHPK QDKSPEEGGL KNGDINVDLS QLKLDDKDCK NYREVSEDWF ENSTTRP00000005849/1-1048 SLLPDSSHPK QDTSPKEDGL KNGDVDIDLS QLKLDDKDST NYREISEDWF bmy_18836T0/1-1029 ---------- ------EDGL KNGDVDIDFS QLKLDDKDSK NHREVSEDWF BACU019131/1-1045 SLLPDNSHPK QDTSPKEDGL KNGDVDIDFS QLKLDDKDSK NHREVSEDWF 801 850 ENSP00000321179/1-1052 DAKESLTGVD VSGTQGNQVE QDTWNLDLTG -EMKNVEPSQ RDKGYLIHVG ENSBTAP00000014122/1-1051 DAKENLTGAD FSGIQENQIE QDKGDPKFTL AEIKNVEPLR KDKGYLMHVG ENSTTRP00000005849/1-1048 DAKENVTGAD FSGIQENQIV QDKEDPKFTL -EMKNVELLR RDKGYLIHVG bmy_18836T0/1-1029 DAKENLTGAD FSGIQENQIV QDKGDPKFTL AEMKNVEPLR RDKGYLIHVG BACU019131/1-1045 DAKENLTGAD FSGIQENQIV QDKGDPKFTL -EMKNVEPLR RDKGYLIHVG 851 900 ENSP00000321179/1-1052 GLCPSVSEAD LRSHFQKYQV SEISIYDST- NYRYASLAFT KNSDAKIAVK ENSBTAP00000014122/1-1051 GLCPSVSEAD LRSYFQKYEI SDISIYDSSP NYRYASLAFK KNSDAKMAVK ENSTTRP00000005849/1-1048 GLCPSVSEAD LRSHFQKYEI SDISIYDSSP NYRYASLALK KNNDAKLAVK bmy_18836T0/1-1029 GLCPSVSEVD LRSHFQKYEI SDISIYDSSP NYRYASLALK KNSDAKLAVK BACU019131/1-1045 GLCPSVSEAD LRSHFQKYEI SDISIYDSSP NYRYASLALK KNSDAKLAVK 901 950 ENSP00000321179/1-1052 EMNGIEINGK SVNVWPVKIL GEYTSPLSSK NGNRISSNNL EKSTNKQIHS ENSBTAP00000014122/1-1051 EMNGIEIKGK SVNVRLVKTP GEYT-PLSSK NGNKVSFSNL EKSTSKEMSS ENSTTRP00000005849/1-1048 EMNGTEINGK SVNVRLVKTP GEYTSPLSSK NGNKVSFSNL EKNISKEVNS bmy_18836T0/1-1029 EMNGIEINGK SVNVRLVKTP GEYTSPLSSK NGNKVSFNNL EKNISKEINS BACU019131/1-1045 EMNGIEINGK SVNVRLVKTP GEYTSPLPSK NGNKVSFNNL EKNISKEINS 951 1000 ENSP00000321179/1-1052 EFSISRLPRT RPRQ-LGSEQ DSEVFPSDQ- GVKKNCKQIE SAKLLPDTPV ENSBTAP00000014122/1-1051 PSSVSRLPRT RPRQ-PGSEQ DSEFFPFDQK GVKKNCKQIE STKLLPDTPI ENSTTRP00000005849/1-1048 ASSVSRLPRT RPRQQLGSEQ DSEFFAFDQK GVKKNCKQIG STKLLPDAPI bmy_18836T0/1-1029 ASSISRLPRT RPRQQLGSEQ DSEFFPFDQK GIKKNCRQIE STKLLPDAPI BACU019131/1-1045 ASSISRLPRT RPRQQLGSEQ DSEFFPFDQK GIKKNCRQIE STTLLPDAPI 1001 1050 ENSP00000321179/1-1052 QFIPPNTLNL RSFTKIIKRL AELHPEVS-- RDHIINALQE VRIRHKGFLN ENSBTAP00000014122/1-1051 QFIPPKTLNL RSFTKIIKRL AELHPEVSRH RDHIIDALQE VRVNHKGFLN ENSTTRP00000005849/1-1048 QFVPPNTSNL RSFTKIVERL AELHPKVG-- RDHIINALQE VRMHHKGSLS bmy_18836T0/1-1029 QFVPPNTLNL GSFTKIMKRL AELHPKAG-- RDHIIDALQE VRMHHKGSLS BACU019131/1-1045 QFVPPSTLNL GSFTKIMKRL AELHPKAD-- RDHIIDALQE VRMHHKGSLS 1051 1100 ENSP00000321179/1-1052 GLSITTI--- ---------- ---------- ------VEMT SSLLKNSASS ENSBTAP00000014122/1-1051 GLSINTI--- ---------- ---------- ------VEMT SSVLENSASS ENSTTRP00000005849/1-1048 GLSVNAI--- ---------- ---------- ------VRMT SSVLENSASR bmy_18836T0/1-1029 GLSVNAINFF GKHEFPPAEN ILQHLGKNCG LVAFSKCKLP TSVYMEYKWT BACU019131/1-1045 GLSVNAI--- ---------- ---------- ------VRMT SSVLENSASG