KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:52:28 2014 Check: 00 .. Name: ENSBTAP00000014128/1-556 Len: 903 Check: 7645 Weight: 1.00 Name: ENSTTRP00000001770/1-432 Len: 903 Check: 2880 Weight: 1.00 Name: ENSP00000325978/1-552 Len: 903 Check: 4350 Weight: 1.00 Name: bmy_21666T0/1-711 Len: 903 Check: 5181 Weight: 1.00 Name: BACU017830/1-390 Len: 903 Check: 5845 Weight: 1.00 // 1 50 ENSBTAP00000014128/1-556 --MSQTGKKS SSDGETTPQA PLVNESIRGS KSRFPKAGSR KESIDPKTTD ENSTTRP00000001770/1-432 --MSQTGNKS SSDGETKPQT LFVNKCIRRS KFRSPKAENR KESNDLKTTA ENSP00000325978/1-552 --MSQTRKKT SSEGETKPQT STVNKFLRGS N-----AESR KEDNDLKTSD bmy_21666T0/1-711 MLELVDSALT SEDGA----- -FVGHLLLRL Q--------N LEVLDLSINR BACU017830/1-390 --MFVRPSSS AVLNAVLTSL PLCPEAKLHL HARSPGQATK EKPRSSSASF 51 100 ENSBTAP00000014128/1-556 SQPTSCTQR- -TKSRHTTAK TLTAETELGS RMEEDERFLQ KLGRKAVSKC ENSTTRP00000001770/1-432 FRPSD----- ------ETPK TITSEMELRP RMEK--LFPP KLGKNPVDKC ENSP00000325978/1-552 SQPSDWIQK- --TATSETAK PLSSEMEWRS SMEKNEHFLQ KLGKKAVNKC bmy_21666T0/1-711 NNDGSLN--- ------SIAQ GLKSTLNL-- ---------- --------KV BACU017830/1-390 VGNGSLERPV LSTDRRNRAK TITSEMELRS RMEENEPFLQ KLGKNPVDKC 101 150 ENSBTAP00000014128/1-556 LDLNNCRQTT ADCSLLLALL PSLPDLEKLD ISWNDVTRGN LHALTQQMHL ENSTTRP00000001770/1-432 LDLNNCRLTT ADVREPVALL PSLPDLEELD ISWNDFIGRT LHLLMQQMHL ENSP00000325978/1-552 LDLNNCGLTT ADMKEMVALL PFLPDLEELD ISWNGFVGGT LLSITQQMHL bmy_21666T0/1-711 LKLHSCGLSQ KSVKLLVSLL ---------- ---------- ---------- BACU017830/1-390 LDLNNCRLTT ADVREP---- ---------- ---------- ---------- 151 200 ENSBTAP00000014128/1-556 VSKLKILRLS SCRCTADDVW ALGEALKVLP ELEELNLSWN SKVGGNLPLI ENSTTRP00000001770/1-432 VSKLKILRLG RCRLTADDVQ AQGEALKALP EL-ELNLSWN SKVGGNLPLI ENSP00000325978/1-552 VSKLKILRLG SCRLTTDDVQ ALGEAFEMIP ELEELNLSWN SKVGGNLPLI bmy_21666T0/1-711 ---------- ---------- ---------- --------HT CPLSCSTP-- BACU017830/1-390 ---------- ---------- --GEALKALP EL-ELNLSWN RKVGGNLPLI 201 250 ENSBTAP00000014128/1-556 LQTLQQGRKI QTLELVDCTL TSEDGVFVGQ LLPRLQNPEV LDLSINRNIG ENSTTRP00000001770/1-432 LRTFREGSKI QMPELVDYAL TS-DGAFVGQ LLLRLQNLEV LDLSINRNIG ENSP00000325978/1-552 LQKFQKGSKI QMIELVDCSL TSEDGTFLGQ LLPMLQSLEV LDLSINRDIV bmy_21666T0/1-711 ---------- -----ADRLV ICQNGVL--- ---------- ---------- BACU017830/1-390 LQTFREGSKK QMLELVDSAL TSEDGAS--- ---------- ---------- 251 300 ENSBTAP00000014128/1-556 GSLNSIAHGL KSTSNLKVLK LHSCGLSQKS VKLLDAAFRY LCELRTLDLS ENSTTRP00000001770/1-432 GSLNSIAQGL KSTLTLKVLK LHSCGLSQKS VKLLDAAFRY LCELRTLDLS ENSP00000325978/1-552 GSLNSIAQGL KSTSNLKVLK LHSCGLSQKS VKILDAAFRY LGELRKLDLS bmy_21666T0/1-711 ---------- ---------- ---------- TFFVDAAFRY LCELRTLDLS BACU017830/1-390 ---------- ---------- ---------- ---VDAAFRY LCEQRTLDLS 301 350 ENSBTAP00000014128/1-556 CNKELGGGFE DITG-LATLE -LEGLDVRQC SLTADDVLSL TQVIPLLSSL ENSTTRP00000001770/1-432 CNKEMSGGFE DSPG-LAVLE HLEGLDLHQC SLMADDTMWL TQ-IPFLSSF ENSP00000325978/1-552 CNKDLGGGFE DSPAQLVMLK HLQVLDLHQC SLTADDVMSL TQVIPLLSNL bmy_21666T0/1-711 CNKEMSGVFE DSPG-LATLK HLEGLDLHQC SLAADDMVSL TQVIPFLSSF BACU017830/1-390 CNKEMSGGFE DSPG-LATLK HVEGLDFHQC SLTADDTVSL TQVIPFLSSF 351 400 ENSBTAP00000014128/1-556 QELDLSANKE MGSYSENLLS RLRFLPALKS LIISNCALES KTFTALAEAS ENSTTRP00000001770/1-432 QELDLSANRK TGSSSEKLLS RL-FLPALKP LLINNCALES ETFTALAEAC ENSP00000325978/1-552 QELDLSANKK MGSSSENLLS RLRFLPALKS LVINNCALES ETFTALAEAS bmy_21666T0/1-711 QELDLSANRK MGSSSENLLS RLRFLPALKS LLINNCALES ETFTALAEAS BACU017830/1-390 QELDLSANRK MGSSSENLLS RLQFLPALKS FLINNCALES ETFTALASV- 401 450 ENSBTAP00000014128/1-556 IHLPALKIVN LSWNTCIGGN LKLLLETLKL SMSLQVLRLS SCSLVTEDMA ENSTTRP00000001770/1-432 VHLPALEIVN LSWNKCVGSN LKLLLETLKL STSLQVLRLS SCSLVTEDVA ENSP00000325978/1-552 VHLSALEVFN LSWNKCVGGN LKLLLETLKL SMSLQVLRLS SCSLVTEDVA bmy_21666T0/1-711 IHLPALEIVN LSWNKCVGSN LKLLLETLKL STSPQVLRLS SCSLV----- BACU017830/1-390 ---------- ---------- ---------- ---------- ---------- 451 500 ENSBTAP00000014128/1-556 LLASVIQTGH LARLQKLDLS YNDSICEAGW TIFCQNLWLL KELTELDISL ENSTTRP00000001770/1-432 LL-------- ---------- ---------- ---------- ---------- ENSP00000325978/1-552 LLASVIQTGH LAKLQKLDLS YNDSICDAGW TMFCQNVRFL KELIELDISL bmy_21666T0/1-711 -----IQTGH LARLRKLDLS YNDSIYDAEW TIFCQNLWLL KELTELDISL BACU017830/1-390 -----IQTGH LARLRKLDLS YNDSICDAEW TIFCQNLWLL KESTELDISL 501 550 ENSBTAP00000014128/1-556 RPSTFRKCGQ WFRHLISAVT KLPKITEVAT KRWLLPASQE EELQGFDQDH ENSTTRP00000001770/1-432 ---------- ---------- ---------- ---------- ---------- ENSP00000325978/1-552 RPSNFRDCGQ WFRHLLYAVT KLPQITEIGM KRWILPASQE EELECFDQDK bmy_21666T0/1-711 QPSAFRXCGQ WFRHVLCAVT KLPEITEIGM KRWVLPASQE EELEGFHQDH BACU017830/1-390 QPSVFRECGQ WFRHLLCAVT KLPEITEIGM KRWVLPASQE EELESFDQDH 551 600 ENSBTAP00000014128/1-556 RSSIHFDH-- ------GGFQ ---------- ---------- ---------- ENSTTRP00000001770/1-432 ---------- ---------- ---------- ---------- ---------- ENSP00000325978/1-552 KRSIHFDH-- ------GGFQ ---------- ---------- ---------- bmy_21666T0/1-711 RSSVHFDHEY EIHCMAEGFS FYILLSFLIF WRIPSLLLQF QQVFKFPKSF BACU017830/1-390 RSSIHFDH-- ------GGFQ ---------- ---------- ---------- 601 650 ENSBTAP00000014128/1-556 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000001770/1-432 ---------- ---------- ---------- ---------- ---------- ENSP00000325978/1-552 ---------- ---------- ---------- ---------- ---------- bmy_21666T0/1-711 AYHYSTPPCL NLKTRTVSAS ITMDWGWLQL FVLTLKKGFL LERKKTDFQL BACU017830/1-390 ---------- ---------- ---------- ---------- ---------- 651 700 ENSBTAP00000014128/1-556 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000001770/1-432 ---------- ---------- ---------- ---------- ---------- ENSP00000325978/1-552 ---------- ---------- ---------- ---------- ---------- bmy_21666T0/1-711 VQESSVLKVN QSLKGRKGPR WEHSDSQEGN RYLAYFIIIQ RQDFQVLQLT BACU017830/1-390 ---------- ---------- ---------- ---------- ---------- 701 750 ENSBTAP00000014128/1-556 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000001770/1-432 ---------- ---------- ---------- ---------- ---------- ENSP00000325978/1-552 ---------- ---------- ---------- ---------- ---------- bmy_21666T0/1-711 DLQRTAFQIV LAEIEEAQVN QASERAAQHP QAGVVQVEQV QRGPPAEEVR BACU017830/1-390 ---------- ---------- ---------- ---------- ---------- 751 800 ENSBTAP00000014128/1-556 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000001770/1-432 ---------- ---------- ---------- ---------- ---------- ENSP00000325978/1-552 ---------- ---------- ---------- ---------- ---------- bmy_21666T0/1-711 HLLQVVPAQP NLRHLRELGQ GVRDGVEAIV DDLQVVETTQ LQRENFKLVS BACU017830/1-390 ---------- ---------- ---------- ---------- ---------- 801 850 ENSBTAP00000014128/1-556 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000001770/1-432 ---------- ---------- ---------- ---------- ---------- ENSP00000325978/1-552 ---------- ---------- ---------- ---------- ---------- bmy_21666T0/1-711 LQVDLPQFGL VHHFLGQRFQ VVSRQSEQLE VVKVFTDEDG DLRQVRAVEA BACU017830/1-390 ---------- ---------- ---------- ---------- ---------- 851 900 ENSBTAP00000014128/1-556 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000001770/1-432 ---------- ---------- ---------- ---------- ---------- ENSP00000325978/1-552 ---------- ---------- ---------- ---------- ---------- bmy_21666T0/1-711 ELTQLADAAE DPKGRGQERV VAQVQALQVA QLPQLGAQIL QLVLVQVEDP BACU017830/1-390 ---------- ---------- ---------- ---------- ---------- 901 950 ENSBTAP00000014128/1-556 --- ENSTTRP00000001770/1-432 --- ENSP00000325978/1-552 --- bmy_21666T0/1-711 DIP BACU017830/1-390 ---