KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:52:30 2014 Check: 00 .. Name: BACU001175/1-608 Len: 737 Check: 2079 Weight: 1.00 Name: ENSP00000368169/1-670 Len: 737 Check: 8087 Weight: 1.00 Name: ENSTTRP00000016155/1-700 Len: 737 Check: 4459 Weight: 1.00 Name: bmy_10027T0/1-611 Len: 737 Check: 6546 Weight: 1.00 Name: ENSBTAP00000014152/1-572 Len: 737 Check: 458 Weight: 1.00 // 1 50 BACU001175/1-608 MAETKIIYHM DEEETPYLVK LPVAPERVTL ADFKNVLSNR PVHAYKFFFK ENSP00000368169/1-670 MAETKIIYHM DEEETPYLVK LPVAPERVTL ADFKNVLSNR PVHAYKFFFK ENSTTRP00000016155/1-700 MAETKIIYHM DEEETPYLVK LPVAPERVTL ADFKNVLSNR PVHAYKFFFK bmy_10027T0/1-611 MAETKIIYHM DEEETPYLVK LPVAPERVTL ADFKNVLSNR PVHAYKFFFK ENSBTAP00000014152/1-572 MAETKIIYHM DEEETPYLVK LPVAPERVTL ADFKNVLSNR PVHAYKFFFK 51 100 BACU001175/1-608 SMDQDFGVVK EEISDDNARL PCFNGRVVSW LVLAEGTHSD AGSQGTDGHA ENSP00000368169/1-670 SMDQDFGVVK EEIFDDNAKL PCFNGRVVSW LVLAEGAHSD AGSQGTDSHT ENSTTRP00000016155/1-700 SMDQDFGVVK EEISDDNARL PCFNGRVVSW LVLAEGTHSD AGSQGTDGHA bmy_10027T0/1-611 SMDQDFGVVK EEISDDNARL PCFNGRVVSW LVLAEGTHSD AGSQGTDGHA ENSBTAP00000014152/1-572 SMDQDFGVVK EEISDDNAKL PCFNGRVVSW LVLAEGAHSD AGSQGTDGHT 101 150 BACU001175/1-608 DLPPPLERTG GIGDSRPPSF HPNVAGSRDG MDNETGTESL VSHRRERARP ENSP00000368169/1-670 DLPPPLERTG GIGDSRPPSF HPNVASSRDG MDNETGTESM VSHRRERARR ENSTTRP00000016155/1-700 DLPPPLERTG GIGDSRPPSF HPNVAGSRDG MDNETGTESL VSHRRERARR bmy_10027T0/1-611 DLPPPLERTG GIGDSRPPSF HPNVAGSRDG MDNETGTESL VSHRRERARR ENSBTAP00000014152/1-572 DLPPPLERTG GIGDSRPPSF HPNVAGSRDG MDNETGTESL VSHRRERARR 151 200 BACU001175/1-608 RNREEAARTN GHPRGDRRRD LGLPPDSAST VLSSELESSS SGLLDSEVDN ENSP00000368169/1-670 RNREEAARTN GHPRGDRRRD VGLPPDSAST ALSSELESSS --FVDSDEDG ENSTTRP00000016155/1-700 RNREEAARTN GHPRGDRRRD LGLPPDSAST VLSSELESSS --FIDSEEDD bmy_10027T0/1-611 RNREEAARTN GHPRGDRRRD LGLPPDSAST VLSSELESSS --FIDSDEDD ENSBTAP00000014152/1-572 RNREEAARTN GHPRGDRRRD LGLPPDSAST VLSSELESSS --FIDSDEDD 201 250 BACU001175/1-608 NPSRLSSSTE QSTSSRLIRK HKRRRRKQRL RQTDRASSFS SITDSTMSLN ENSP00000368169/1-670 STSRLSSSTE QSTSSRLIRK HKRRRRKQRL RQADRASSFS SITDSTMSLN ENSTTRP00000016155/1-700 NTSRLSSSTE QSTSFRLIRK HKRRRRKQRL RQTDRASSFS SITDSTMSLN bmy_10027T0/1-611 NTSRLSSSTE QSTSSRLIRK HKRRRRKQRL RQTDRASSFS SITDSTMSLN ENSBTAP00000014152/1-572 NTSRLSSSTE QSTSSRLIRK HKRRRRKQRL RQTDRASSFS SITDSTMSLN 251 300 BACU001175/1-608 IITVTLNMER HHFLGISIVG QSNDRGDGGI YIGSIMKGGA VAADGRIEPG ENSP00000368169/1-670 IVTVTLNMER HHFLGISIVG QSNDRGDGGI YIGSIMKGGA VAADGRIEPG ENSTTRP00000016155/1-700 IITVTLNMER HHFLGISIVG QSNDRGDGGI YIGSIMKGGA VAADGRIEPG bmy_10027T0/1-611 IITVTLNMER HHFLGISIVG QSNDRGDGGI YIGSIMKGGA VAADGRIEPG ENSBTAP00000014152/1-572 IITVTLNMER HHFLGISIVG QSNDRGDGGI YIGSIMKGGA VAADGRIEPG 301 350 BACU001175/1-608 DMLLQ----- ---------- ---------- -PPGLRRRPC LA-------- ENSP00000368169/1-670 DMLLQVNDVN FENMSNDDAV RVLREIVSQT GPISLTVAKC WDPTPRSYFT ENSTTRP00000016155/1-700 DMLLQVNDVN FENMSNDDAV RVLREIVSQT GPISLTVAKC WDPTPRSYFT bmy_10027T0/1-611 DMLLQVNDVN FENMSNDDAV RVLREIVSQT GPISLTVAKC WDPTPRSYFT ENSBTAP00000014152/1-572 DMLLQVNDVN FENMSNDDAV RVLREIVSQT GPISLTVAKC WDPTPRSYFT 351 400 BACU001175/1-608 ---------- ---------- ---------- ---------- ---------- ENSP00000368169/1-670 VPRADPVRPI DPAAWLSHTA ALTGALPRY- ---------- ---------- ENSTTRP00000016155/1-700 IPRADPVRPI DPAAWLSHTA ALTGALPRYG TSPCSSAVTR TSTSSLTSSV bmy_10027T0/1-611 IPRADPVRPI DPAAWLSHTA ALTGALPRYG TSPCSSAVTR TSSSSLTSSV ENSBTAP00000014152/1-572 IPRADPVRPI DPAAWLSHTA ALTGALPRYG TSPCSSAVTR TSSSSLTSSV 401 450 BACU001175/1-608 ----ELEEVP LTVKSDMGAV VRVMQLPDSG LEIRDRMWLK ITIANAVIGA ENSP00000368169/1-670 ----ELEEAP LTVKSDMSAV VRVMQLPDSG LEIRDRMWLK ITIANAVIGA ENSTTRP00000016155/1-700 PGAPQLEEVP LTVKSDMGAV VRVMQLPDSG LEIRDRMWLK ITIANAVIGA bmy_10027T0/1-611 PGAPQLEEVP LTVKSDMGAV VRVMQLPDSG LEIRDRMWLK ITIANAVIGA ENSBTAP00000014152/1-572 PGAPQLEEAP LTVKSDMGAV VRVMQLPDSG LEIRDRMWLK ITIANAVIGA 451 500 BACU001175/1-608 DVVDWLYTHL AGF------- ---------- ---------- ---------- ENSP00000368169/1-670 DVVDWLYTHV EGFKERREAR KYASSLLKHG FLRHTVNKIT FSEQCYYVFG ENSTTRP00000016155/1-700 DVVDWLYTHL EGFRERREAR RYASSMLKRG FLRHTVNKIT FSEQCYYVFG bmy_10027T0/1-611 DVVDWLYTHL EGFRERREAR KYASSMLKRG FLRHTVNKIT FSEQCYYVFG ENSBTAP00000014152/1-572 DVVDWLYAHL EGFRERREAR KYASSMLKRG FLRHTVNKVT FSEQCYYVFG 501 550 BACU001175/1-608 ----HLAALN LNSGSSGASD QDTLAPLPHP AAPWPLGQGY PYQYPGPPPC ENSP00000368169/1-670 DLCSNLATLN LNSGSSGTSD QDTLAPLPHP AAPWPLGQGY PYQYPGPPPC ENSTTRP00000016155/1-700 DLCSNFAALN LNSGSSGASD QDTLAPLPHP AAPWPVGQGY PYQYPGPPPC bmy_10027T0/1-611 DLCSNLAALN LNSGSSGASD QDTLAPLPHP AAPWPLGQGY PYQYPGPPPC ENSBTAP00000014152/1-572 DLCSNLAALN LNSGSSGASD QDTLAPLPHP AAPWPLGQGY PYQYPGPPPC 551 600 BACU001175/1-608 FPPAYQDPGF GYGSGSAGSQ QSEGPPGSAP GCLRNGRLSW KRQGLALTVP ENSP00000368169/1-670 FPPAYQDPGF SYGSGSTGSQ QSEGSKSSGS TRSS------ ---------- ENSTTRP00000016155/1-700 FPPAYQDPGF GYGSGSAGSQ QSEGSKSSGS TRSAGGSS-- ---------- bmy_10027T0/1-611 FPPAYQDPGF GYGSGSAGSQ QSEG------ ---------- ---------- ENSBTAP00000014152/1-572 FPPAYQDPGF GYGSGSAGSQ QSEG------ ---------- ---------- 601 650 BACU001175/1-608 FLSPLLDPRK QKQWVHPERW REQPSGPGAR EGEPVGWSWG QWQRVGPHSA ENSP00000368169/1-670 ---------- ---------- RRAPGREKER RAAGAGGSGS ESDHTAPSGV ENSTTRP00000016155/1-700 ---------- ---------- RRALGREKES RSAGAGGSGS ESDHTVPSGV bmy_10027T0/1-611 ---------- ---------- ---EGLPPGR HTFPTAW--- ---------- ENSBTAP00000014152/1-572 ---------- ---------- ---------- ---------- ---------- 651 700 BACU001175/1-608 QRGGQRRLAG GGCAAGXXXX XXRSQASAAA PGLPPLHPLT KAYSVVGGPP ENSP00000368169/1-670 GS-SWRERPA GQLSRG---S SPRSQASATA PGLPPPHPTT KAYTVVGGPP ENSTTRP00000016155/1-700 GSGGWRERPA GQLSRG---S SPRSQASAAA PGLPPLHPLT KAYSVVGGPP bmy_10027T0/1-611 ---------- ---------L CPVCR----- --LP------ ---------- ENSBTAP00000014152/1-572 ---------- ---------- ---------- ---------- ---------- 701 750 BACU001175/1-608 GGPPVRELAA VPPELTGSRQ SFQKAMGNPC EFFVDIM ENSP00000368169/1-670 GGPPVRELAA VPPELTGSRQ SFQKAMGNPC EFFVDIM ENSTTRP00000016155/1-700 GGPPVRELAA VPPELTGSRQ SFQKAMGNPC EFFVDIM bmy_10027T0/1-611 --RPVRSHPL CAWALGGSF- ---------- ------- ENSBTAP00000014152/1-572 ---------- ---------- ---------- -------