KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:52:31 2014 Check: 00 .. Name: ENSP00000441000/1-1093 Len: 1618 Check: 3075 Weight: 1.00 Name: ENSTTRP00000011616/1-1039 Len: 1618 Check: 2079 Weight: 1.00 Name: ENSBTAP00000014160/1-1091 Len: 1618 Check: 1462 Weight: 1.00 Name: bmy_16305T0/1-990 Len: 1618 Check: 5570 Weight: 1.00 Name: BACU015911/1-1529 Len: 1618 Check: 2931 Weight: 1.00 // 1 50 ENSP00000441000/1-1093 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000011616/1-1039 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000014160/1-1091 ---------- ---------- ---------- ---------- ---------- bmy_16305T0/1-990 ---------- ---------- ---------- ---------- ---------- BACU015911/1-1529 MESTPSRGGL NRVHLQCRNL QEFLGSLSPG VLDRLYGHPA TCLAVFRELP 51 100 ENSP00000441000/1-1093 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000011616/1-1039 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000014160/1-1091 ---------- ---------- ---------- ---------- ---------- bmy_16305T0/1-990 ---------- ---------- ---------- ---------- ---------- BACU015911/1-1529 SLAKNWVMRM LFLEQPLPQA AVALWVKKEF SKAQEESTGL LSGLRIWHTQ 101 150 ENSP00000441000/1-1093 ---------- ---------- ----MGGKAW PRRAVGTAGG PCAEQI---- ENSTTRP00000011616/1-1039 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000014160/1-1091 ---------- ---------- --------NH CWREAGRGGG KRLEQT---- bmy_16305T0/1-990 ---------- ---------- ---------- ---------- ---------- BACU015911/1-1529 LLPGGLQGLI LNPIFRQNLR IALLGGGKAW SDDTSQLGPD KHARDVPSLD 151 200 ENSP00000441000/1-1093 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000011616/1-1039 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000014160/1-1091 ---------- ---------- ---------- ---------- ---------- bmy_16305T0/1-990 ---------- ---------- ---------- ---------- ---------- BACU015911/1-1529 KYAEERWEVV LHFMVGSPSA AVSQDLAQLL SQAGLMKSAE PGEPPCITSA 201 250 ENSP00000441000/1-1093 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000011616/1-1039 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000014160/1-1091 ---------- ---------- ---------- ---------- ---------- bmy_16305T0/1-990 ---------- ---------- ---------- ---------- ---------- BACU015911/1-1529 GFQFLLLDTP AQLWYFMLQY LQTAQSRGMD LVEILSFLFQ LSFSTLGKDY 251 300 ENSP00000441000/1-1093 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000011616/1-1039 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000014160/1-1091 ---------- ---------- ---------- ---------- ---------- bmy_16305T0/1-990 ---------- ---------- ---------- ---------- ---------- BACU015911/1-1529 SVEGMSDSLL NFLQHLREFG LVFQRKRKSR RYYPTRLAIN LSSGVSGAGG 301 350 ENSP00000441000/1-1093 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000011616/1-1039 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000014160/1-1091 ---------- ---------- ---------- ---------- ---------- bmy_16305T0/1-990 ---------- ---------- ---------- ---------- ---------- BACU015911/1-1529 TVHQPGFIVV ETNYRLYAYT ESELQIALIA LFSEMLYRFP NMVVAQVTRE 351 400 ENSP00000441000/1-1093 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000011616/1-1039 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000014160/1-1091 ---------- ---------- ---------- ---------- ---------- bmy_16305T0/1-990 ---------- ---------- ---------- ---------- ---------- BACU015911/1-1529 SVQQAIASGI TAQQIIHFLR TRAHPVMLKQ TPVLPPTITD QIRLWELERD 401 450 ENSP00000441000/1-1093 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000011616/1-1039 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000014160/1-1091 ---------- ---------- ---------- ---------- ---------- bmy_16305T0/1-990 ---------- ---------- ---------- ---------- ---------- BACU015911/1-1529 RLRFTEGVLY NQFLSQVDFE LLLAHARELG VLVFENSAKR LMVVTPAGHG 451 500 ENSP00000441000/1-1093 ---------- ----SAPFQT LLMPHLPLAS FRPPFWGLRH SRGLPRFHSV ENSTTRP00000011616/1-1039 ---------- ---------- --MPHLPLAS FRPPLWGLRP SRGLPRSHPI ENSBTAP00000014160/1-1091 ---------- ----LAPCQA LPMPHLPLTS FRPPLWGLRP SRGLPRSRPL bmy_16305T0/1-990 ---------- ---------- --MPHLPLAS FRPPLWGLRP SRGLPRSHPL BACU015911/1-1529 DVKRFWKRQK HNSTLAPFQV LPMPHLPLAS FRPPLWGLRP SRGLPRSHPL 501 550 ENSP00000441000/1-1093 STQSEPHGSP ISRRNREAKQ KRLREKQATL EAEIAGESKS PAESIKAWRP ENSTTRP00000011616/1-1039 STQSEPNGSA ISQRNREAKQ KRLRQKQAAL EAGIAQKSKS PAESSKAWTP ENSBTAP00000014160/1-1091 STQSEPNGSA ISRRNREAKQ KRLREKQASL EAGIAPKSKS PAESSKAWTP bmy_16305T0/1-990 STQSEPNGSA ISQRNREAKQ KRLRQKQAAL EAGIAQKTKS PAESSKAWTP BACU015911/1-1529 STQSEPNGSA ISQRNREAKQ KRLRQKQAAL EVGIAQKTKS PAESSKAWTP 551 600 ENSP00000441000/1-1093 KELVLYEIPT KPGEKKDVSG PLPPAYSPRY VEAAWYPWWV REGFFKPEYQ ENSTTRP00000011616/1-1039 KEIVLYEIPT EHGEKKDVSR PLPPAYSPQY VEAAWYPWWV REGFFKPEYQ ENSBTAP00000014160/1-1091 KERVLYEIPT EHGEKKDVSR PLPPAYSPQY VEAAWYPWWV REGFFKPEYQ bmy_16305T0/1-990 KEIVLYEIPT EHGEKKDVSR PLPPAYSPQY VEAAWYPWWV REGFFKPEYQ BACU015911/1-1529 KEIVLYEIPT EHGEKKDVSR PLPPAYSPQY VEAAWYPWWV REGFFKPEYQ 601 650 ENSP00000441000/1-1093 ARLPQATGET FSMCIPPPNV TGSLHIGHAL TVAIQDALVR WHRMRGDQVL ENSTTRP00000011616/1-1039 ARLPQATRET FSMCIPPPNV TGSLHIGHAL TVAIQDALVR WHRMRGDQVL ENSBTAP00000014160/1-1091 ARLPQATGET FSMCIPPPNV TGSLHIGHAL TVAIQDALVR WHRMRGDRVL bmy_16305T0/1-990 ARLPQATRET FSMCIPPPNV TGSLHIGHAL TVAIQDALVR W--------- BACU015911/1-1529 ARLPQATRET FSMCIPPPNV TGSLHIGHAL TVAIQDALVR WHRMRGDQVL 651 700 ENSP00000441000/1-1093 WVPGSDHAGI ATQAVVEKQL WKERGVRRHE LSREAFLREV WQWKEAKGGE ENSTTRP00000011616/1-1039 WVPGSDHAGI ATQAVVEKQL WKERGVRRHE LSREDFLREV WKWKEXXXXX ENSBTAP00000014160/1-1091 WVPGSDHAGI ATQAVVEKQL WKERGVRRHE LSREDFLREV WKWKEEKGGE bmy_16305T0/1-990 ---------- ---------- ---------- ---------- ------KGGE BACU015911/1-1529 WVPGSDHAGI ATQAVVEKQL WKERGVRRHE LSREDFLREV WKWKEEKGGE 701 750 ENSP00000441000/1-1093 ICEQLRALGA SLDWDRECFT MDVGSSVAVT EAFVRLYKAG LLYRNHQLVN ENSTTRP00000011616/1-1039 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000014160/1-1091 ICEQLRALGA SLDWDRECFT MDTGSSVAVT EAFVRLYKAG LLYRSRQLVN bmy_16305T0/1-990 ICEQLRVLGA SLDWDRECFT MDA------- ---------- ---------- BACU015911/1-1529 ICEQLRVLGA SLDWDRECFT MDAGSSVAVT EAFVRLYKAG LLYRSRQLVN 751 800 ENSP00000441000/1-1093 WSCALRSAIS DIEVENRPLP GHTQLRLPGC PTPVSFGLLF SVAFPVDGEP ENSTTRP00000011616/1-1039 XXXXXXXXXX XXXVESRPLP GCTELRLPDS PTPVSFGLLF SVAFPVDGEP ENSBTAP00000014160/1-1091 WSCALRSAIS DIEVESRPLP GRTELQLPGC PTPVSFGLLF SVAFPVDGEP bmy_16305T0/1-990 ---------- ---VESRPLA GCTELRLPDS PTPVSFGLLF SVAFPVDGEP BACU015911/1-1529 WSCALRSAIS DIEVESRPLS GCTELRLPDS PTPVSFGLLF SVAFPVDGEP 801 850 ENSP00000441000/1-1093 DAEVVVGTTR PETLPGDVAV AVHPDDSRYT HLHGRQLRHP LMGQPLPLIT ENSTTRP00000011616/1-1039 DAEVVVGTTR PETLPGDVAV AVHPDDSRYT HLHGRQLRHP LTGQLLPLIT ENSBTAP00000014160/1-1091 DAEVVVGTTR PETLPGDVAV AVHPDDSRYT HLHGRQLCHP LTGQLLPLIT bmy_16305T0/1-990 DAEVVVGTTR PETLPGDVAV AVHPDDSRYT HLHRRQLRHP LTGQLLPLIT BACU015911/1-1529 DAEVVVGTTR PETLPGDVAV AVHPDDSRYI HLHGQQLRHP LTGQLLPLIT 851 900 ENSP00000441000/1-1093 DYAVQPHVGT GAVKVTPAHS PADAEMGARH GLSPLNVIAE DGTMTSLCGD ENSTTRP00000011616/1-1039 DCAVEPHLGT GAVKVTPAHS PADAELGARH GLSPLSVIAE DGTMTSLCGD ENSBTAP00000014160/1-1091 DCTVQPHLGT GAVKVTPAHS PADAELGARH GLSPRSVIAE DGTMTALCED bmy_16305T0/1-990 DCAVQPHLGT GAVKVTPAHS PADAELGARH GLSPLSVIAE DGTMTSLCGD BACU015911/1-1529 DCAVQPHLGT GAVKVTPAHS PADAELGARH GLSPLSVIAE DGTMTSLCGD 901 950 ENSP00000441000/1-1093 WLQGLHRFVA REKIMSVLSE WGLFRGLQNH PMVLPICSRS GDVIEYLLKN ENSTTRP00000011616/1-1039 WLQSLHRFVA REKILSALRE RGLFRGFQDH PMVLPICSRS GDVVEYLPKS ENSBTAP00000014160/1-1091 WLQGLHRFVA REKILSALRE RGLFRGLQNH PMVLPICSRS GDVVEYLLKS bmy_16305T0/1-990 WLQGLHRFVA REKILSALRE GGLFRGFQDH PMVLPICR-- ---------- BACU015911/1-1529 WLQGLHRFVA REKILSALRE RDLFRGFQDH PMVLPICSRS GDVVEYLPKS 951 1000 ENSP00000441000/1-1093 QWFVRCQEMG ARAAKAVESG ALELSPSFHQ KNWQHWFSHI GDWCVSRQLW ENSTTRP00000011616/1-1039 QWFVCCREMG DRAAKXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000014160/1-1091 QWFVRCREMG ERAAKAVESG ALDLSPSFHQ KNWQHWFSHI GDWCVSRQLW bmy_16305T0/1-990 ---------- ---------- ---------- ---------- -DWCVSRQLW BACU015911/1-1529 QWFVRCREMG DRAAKAVESG ALELSPSFHQ KNWQHWFSHT GDWCVSRQLW 1001 1050 ENSP00000441000/1-1093 WGHQIPAYLV VEDHAQ---- ---------- ---------- ---------- ENSTTRP00000011616/1-1039 XXXXXXXXXX XXXXXX---- ---------- ---------- ---------- ENSBTAP00000014160/1-1091 WGHRIPAYLV VEEHAK---- ---------- ---------- ---------- bmy_16305T0/1-990 WGHQIPAYLV VEEHTQVGRK KRKGGLGVAE RALAQESEDF QCWSQLPAFA BACU015911/1-1529 WGHQIPAYLV VEEHTQ---- ---------- ---------- ---------- 1051 1100 ENSP00000441000/1-1093 -------GE- EDCWVVGRSE AEAREVAAEL TGRPGAELTL ERDPDVLDTW ENSTTRP00000011616/1-1039 -------GDA KDCWVVGRTE AEAREVAAEL TGRPGAELTL ERDPDVLDTW ENSBTAP00000014160/1-1091 -------GET EDFWVVGRTE AEAREVAAEL TGRPGAELTL ERDPDVLDTW bmy_16305T0/1-990 VLSGLGLGDT KDCWVVGRTE AEAREVAAEL TGRPGAELIL ERDPDVLDTW BACU015911/1-1529 -------GDT NDCWVVGRTE AEAREVAAEL TGRPGAELTL ERDPDVLDTW 1101 1150 ENSP00000441000/1-1093 FSSALFPFSA LGWPQETPDL ARFYPLSLLE TGSDLLLFWV GRMVMLGTQL ENSTTRP00000011616/1-1039 FSSALFPFSA LGWPQETPDL ARFYPLSLLE TGGDLLLFWV GRMVMLGTQL ENSBTAP00000014160/1-1091 FSSALFPFSA LGWPRETPDL ARFYPLSLLE TGSDLLLFWV GRMVMLGTQL bmy_16305T0/1-990 FSSALFPFSA LGWPQETPDL AHFYPLSLLE TGSDLLLFWV GRMVMLGTQL BACU015911/1-1529 FSSALFPFSA LGWPQETPDL AHFYPLSLLE TGSDLLLFWV GRMVMLGTQL 1151 1200 ENSP00000441000/1-1093 TGQLPFSKVL LHPMVRDRQG RKMSKSLGNV LDPRDIISGV EMQVLQEKLR ENSTTRP00000011616/1-1039 TGQLPFSKVL LHSMVRDRQG RKMSKSLGNV LDPRDIINGV ELQVLQEKLR ENSBTAP00000014160/1-1091 TGQLPFSKVL LHSMVRDRQG RKMSKSLGNV LDPRDIISGV ELQVLQDNLR bmy_16305T0/1-990 TGQLPFSKVL LHSMVRDRQG RKMSKSLGNV LDPRDIISGV ELQVLQEKLR BACU015911/1-1529 TGQLPFSKVL LHSMVRDRQG RKMSKSLGNV LDPRDIISGV ELQVLQEKLR 1201 1250 ENSP00000441000/1-1093 SGNLDPAELA IVAAAQKKDF PHGIPECGTD ALRFTLCSHG VQ-------- ENSTTRP00000011616/1-1039 DGNLDPAELV IAASAQRKDF PHGIPECGTD ALRFALCSHG AL-------- ENSBTAP00000014160/1-1091 DGNLDPAELA IAASAQRKDF PHGIPECGTD ALRFTLCSHG AL-------- bmy_16305T0/1-990 DGNLDPAELV IAASAQRKDF PHGIPECGTD ALRFALCSHG ALGKPGRGQP BACU015911/1-1529 DGNLDAAELV IAASAQRKDF PHGIPECGTD ALRFALCSHG AL-------- 1251 1300 ENSP00000441000/1-1093 ---------- ---------- ---------- --AGDLHLSV SEVQSCRHFC ENSTTRP00000011616/1-1039 ---------- ---------- ---------- --GGDLHLSV SEVLSFRHFC ENSBTAP00000014160/1-1091 ---------- ---------- ---------- --GGDLHLSV SEVLSFRHFC bmy_16305T0/1-990 AVAPVRWGRA GQGQGLPVQP PPVHAPSCLS LPGGDLHLSV SEVLSFRHFC BACU015911/1-1529 ---------- ---------- ---------- --GGDLHLSV SEVLSFRHFC 1301 1350 ENSP00000441000/1-1093 NKIWNALRFI LNALGEKFVP QPAEELSPSS PMDAWILSRL ALAAQECERG ENSTTRP00000011616/1-1039 NKIWNALRFI LNALGEKFIP QPAEELSPAS PMDAWILSCL ARTARDCERG ENSBTAP00000014160/1-1091 NKIWNALRFI LNALGEEFIP QPAEELSPAS RMDTWILSCL ARTAQDCERG bmy_16305T0/1-990 NKIWNALRFV LNALGEKFIP QPAEELSPAS PMDAWILSCL ARTARDCERG BACU015911/1-1529 NKIWNALRFI LNALGEKFIP QSAEELSPAS PMDAWILSCL ARTARDCERG 1351 1400 ENSP00000441000/1-1093 FLTRELSLVT HALHHFWLHN LCDVYLEAVK PVLWHSPRPL GPPQVLFSCA ENSTTRP00000011616/1-1039 FLTRELALVT HALHHFWLHN LCDVYLEAVK PVLLHLPRPP GPLQVLFSCA ENSBTAP00000014160/1-1091 FLTRELSLVT HALHHFWLHN LCDVYLEAVK PVLSHSPRPL EPPQVLFFCA bmy_16305T0/1-990 FLTCELALVT HALHHFWLHN LCDVYLEAVK PVLLHLPHPP GPLQVLFSCA BACU015911/1-1529 FLTCELALVT HALYHFWLHN LCDVYLEAVK PVLLHLPHPP GPLQVLFSCA 1401 1450 ENSP00000441000/1-1093 DLGLRLLAPL MPFLAEELWQ RLPPRPGCPP APSISVAPYP SACSLEHWRQ ENSTTRP00000011616/1-1039 DIGLRLLAPL MPFLAEELWQ RLPPRPGGAP APSICVAPYP SALSLEHWHQ ENSBTAP00000014160/1-1091 DVGLRLLAPL MPFLAEELWQ RLPPRPGGPS APSICVAPYP SARSLEHWHQ bmy_16305T0/1-990 DVGLRLLAPL MPFLAEELWQ RLPPRPGGAP APSICVAPYP SARSLEHWHQ BACU015911/1-1529 DVGLRLLAPL MPFLAEELWQ RLPPRPGGAP APSICVAPYP SARSLEHWHQ 1451 1500 ENSP00000441000/1-1093 PELERRFSRV QEVVQVLRAL RATYQLTKAR PRVLLQSSEP GDQGLFEAFL ENSTTRP00000011616/1-1039 PELERHFSRV QEAVQALRAL RATYQLTKAR PRVLLQSSEP GE-GLFDAFL ENSBTAP00000014160/1-1091 PELERRFSRV QESVQVLRAL RATYQLTKAR PRVLLQSSEP GEQGLFEAFL bmy_16305T0/1-990 PELERHFSRV QEAVQALRAL RATYQLTKAR PRVLLQSSEP GDQGLFEAFL BACU015911/1-1529 PELERHFSRV QEAVQALRAL RATYQLTKAR PRVLLQSSEP GDQGLFEAFL 1501 1550 ENSP00000441000/1-1093 EPLGTLGYCG AVGLLPPGAA APSGWAQAPL SDTAQVYMEL QGLVDPQIQL ENSTTRP00000011616/1-1039 ESLSTLGHCG AVGLLP---- ---------- ---------L Q-LVDPQTHL ENSBTAP00000014160/1-1091 EPLGILGYCG AVGLLPPGAA APSGWVQAAL SDTSQAYMEL QGLVDPQTHL bmy_16305T0/1-990 EPLGTLGHCG AVGLLPPAAA APSGWAQAPL SDTVQVYMEL QGLVDPQTHL BACU015911/1-1529 EPLGTLGHCG AVGLLPPAAA APSGWAQAPL SDTVQVYMEL QGLVDPQTHL 1551 1600 ENSP00000441000/1-1093 PLLAARRYKL QKQLDSLTAR TPSEGEAGTQ RQQKLSSLQL ELSKLDKAAS ENSTTRP00000011616/1-1039 PRLAARRHKL QKQLDGLIAR TPSEGESETQ RQQRLSSLQL ELSKLDKAAS ENSBTAP00000014160/1-1091 PRLAARRHKL QKQLDGLLAR PPSEGQAETQ RQQRLSSLQL ELSKLDKAAS bmy_16305T0/1-990 PRLAARRHKL QKQLDGLIAR TPSEGEAETQ RQQR-----L ELSKLDKAAS BACU015911/1-1529 PRLAARRHKL QKQLDGLIAR TPSEGEAETQ RQQR-----L ELSKLDKAAS 1601 1650 ENSP00000441000/1-1093 HLRQLMDEPP APGSPEL- ENSTTRP00000011616/1-1039 HLRHLMDVSP ALGSFEL- ENSBTAP00000014160/1-1091 HLQQLMDDFP SPGSSPSP bmy_16305T0/1-990 HLRHLMDVSP SPG--EL- BACU015911/1-1529 HLRHLMDVSP SPG--EL-