KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:52:34 2014 Check: 00 .. Name: ENSTTRP00000003488/1-801 Len: 857 Check: 1707 Weight: 1.00 Name: ENSP00000472940/1-853 Len: 857 Check: 4260 Weight: 1.00 Name: ENSBTAP00000014194/1-808 Len: 857 Check: 4159 Weight: 1.00 Name: bmy_03084T0/1-857 Len: 857 Check: 7700 Weight: 1.00 Name: BACU015855/1-808 Len: 857 Check: 2211 Weight: 1.00 // 1 50 ENSTTRP00000003488/1-801 ---------- ---------- ---------- ---------- ---------M ENSP00000472940/1-853 ----MLPRSP PLPRGNLWWR EEFGSFRAGV ESSWEPPRDF GGGSSLAAGM ENSBTAP00000014194/1-808 ---------- ---------- ---------- ---------- ---------M bmy_03084T0/1-857 QNVNTLQDTP PLPRGYFSWR EKLGSFRAGA GSAKGLPHGS GGRSFRAANM BACU015855/1-808 ---------- ---------- ---------- ---------- ---------M 51 100 ENSTTRP00000003488/1-801 AGTVVLDDVE LREAQRDYLD FLDDEXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000472940/1-853 AGTVVLDDVE LREAQRDYLD FLDDEEDQGI YQSKVRELIS DNQYRLIVNV ENSBTAP00000014194/1-808 AGTVVLDDVE LREAQRDYLD FLDDEEDQGI YQSKVRELIS DNQYRLIVNV bmy_03084T0/1-857 AGTVVLDDVE LREAQRDYLD FLDDEEDQGI YQSKVRELIS DNQYRLIVNV BACU015855/1-808 AGTVVLDDVE LREAQRDYLD FLDDEEDQGI YQSKVRELIS DNQYRLIVNV 101 150 ENSTTRP00000003488/1-801 XXXXXXXXXX XXXLLSNAFE ELVAFQRALK DFVASIDATY AKQYEEFYIG ENSP00000472940/1-853 NDLRRKNEKR ANRLLNNAFE ELVAFQRALK DFVASIDATY AKQYEEFYVG ENSBTAP00000014194/1-808 NDLRRKNEKR ANRLLSNAFE ELVAFQRALK DFVASIDATY AKQYEEFYIG bmy_03084T0/1-857 NDLRRKNEKR ANRLLSNAFE ELVAFQRALK DFVASIDATY AKQYEEFYIG BACU015855/1-808 NDLRRKNEKR ANRLLSNAFE ELVAFQRALK DFVASIDATY AKQYEEFYIG 151 200 ENSTTRP00000003488/1-801 LEGSFGSKHV SPRTLTSCFL SCVVCVEGIV TKCSLVRPKV VRSVHYCPAT ENSP00000472940/1-853 LEGSFGSKHV SPRTLTSCFL SCVVCVEGIV TKCSLVRPKV VRSVHYCPAT ENSBTAP00000014194/1-808 LEGSFGSKHV SPRTLTSCFL SCVVCVEGIV TKCSLVRPKV VRSVHYCPAT bmy_03084T0/1-857 LEGSFGSKHV SPRTLTSCFL SCVVCLEGIV TKCSLVRPKV VRSVHYCPAT BACU015855/1-808 LEGSFGSKHV SPRTLTSCFL SCVVCLEGIV TKCSLVRPKV VRSVHYCPAT 201 250 ENSTTRP00000003488/1-801 KKTIERHYSD LTTLVAFPSS SVYPTKDEEN NPLETEYGLS VYKDHQIITI ENSP00000472940/1-853 KKTIERRYSD LTTLVAFPSS SVYPTKDEEN NPLETEYGLS VYKDHQTITI ENSBTAP00000014194/1-808 KKTIERRYSD LTSLVAFPSS SVYPTKDEEN NPLETEYGLS VYKDHQIITI bmy_03084T0/1-857 KKTIERRYSD LTTLVAFPSS SVYPTKDEEN NPLETEYGLS VYKDHQIITI BACU015855/1-808 KKTIERRYSD LTTLVAFPSS SVYPTKDEEN NPLETEYGLS VYKDHQIITI 251 300 ENSTTRP00000003488/1-801 QEMPEKAPAG QLPRSVDVIL DNDLVDRVKP GDRVQVVGTY RCLPGKKGGY ENSP00000472940/1-853 QEMPEKAPAG QLPRSVDVIL DDDLVDKAKP GDRVQVVGTY RCLPGKKGGY ENSBTAP00000014194/1-808 QEMPEKAPAG QLPRSVDVIL DDDLVDRVKP GDRVQVVGTY RCLPGKKGGY bmy_03084T0/1-857 QEMPEKAPAG QLPRSVDVIL DDDLVDRVKP GDRVQVVGTY RCLPGKKGGY BACU015855/1-808 QEMPEKAPAG QLPRSVDVIL DDDLVDRVKP GDRVQVVGTY RCLPGKKGGY 301 350 ENSTTRP00000003488/1-801 TSGTFRTVLI ACNVKQMSKD VQPSFSAEDI AKIKKFSKTR X-------GQ ENSP00000472940/1-853 TSGTFRTVLI ACNVKQMSKD AQPSFSAEDI AKIKKFSKTR SKDIFDQLAK ENSBTAP00000014194/1-808 TSGTFRTVLI ACNVKQMSKD VQPSFSAEDI AKIKKFSKTR SKDIFDQLAR bmy_03084T0/1-857 TSGTFRTVLI ACNVKQMSKD VQPSFSAEDI AKIKKFSKTR SKDIFDQLAK BACU015855/1-808 TSGTFRTVLI ACNVKQMSKD VQPSFSAEDI AKIKKFSKTR SKDIFDQLAK 351 400 ENSTTRP00000003488/1-801 SLAPSIHGHD YVKKAILCLL LGGVERDLEN GSHIRGDINI LLIGDPSVAK ENSP00000472940/1-853 SLAPSIHGHD YVKKAILCLL LGGVERDLEN GSHIRGDINI LLIGDPSVAK ENSBTAP00000014194/1-808 SLAPSIHGHD YVKKAILCLL LGGVERDLEN GSHIRGDINI LLIGDPSVAK bmy_03084T0/1-857 SLAPSIHGHD YVKKAILCLL LGGVERDLEN GSHIRGDINI LLIGDPSVAK BACU015855/1-808 SLAPSIHGHD YVKKAILCLL LGGVERDLEN GSHIRGDINI LLIGDPSVAK 401 450 ENSTTRP00000003488/1-801 SQLLRYVLCT APRAIPTTGR GSSGVGLTAA VTTDQETGER RLEAGAMVLA ENSP00000472940/1-853 SQLLRYVLCT APRAIPTTGR GSSGVGLTAA VTTDQETGER RLEAGAMVLA ENSBTAP00000014194/1-808 SQLLRYVLCT APRAIPTTGR GSSGVGLTAA VTTDQETGER RLEAGAMVLA bmy_03084T0/1-857 SQLLRYVLCT APRAIPTTGR GSSGVGLTAA VTTDQETGER RLEAGAMVLA BACU015855/1-808 SQLLRYVLCT APRAIPTTGR GSSGVGLTAA VTTDQETGER RLEAGAMVLA 451 500 ENSTTRP00000003488/1-801 DRGVVCIDEF DKMSDMDRTA IHEVMEQGRV TIAKAGIHAR LNARCSVLAA ENSP00000472940/1-853 DRGVVCIDEF DKMSDMDRTA IHEVMEQGRV TIAKAGIHAR LNARCSVLAA ENSBTAP00000014194/1-808 DRGVVCIDEF DKMSDMDRTA IHEVMEQGRV TIAKAGIHAR LNARCSVLAA bmy_03084T0/1-857 DRGVVCIDEF DKMSDMDRTA IHEVMEQGRV TIAKAGIHAR LNARCSVLAA BACU015855/1-808 DRGVVCIDEF DKMSDMDRTA IHEVMEQGRV TIAKAGIHAR LNARCSVLAA 501 550 ENSTTRP00000003488/1-801 ANPVYGRYDQ YKTPMENIGL QDSLLSRFDL LFIMLDQMDP EHDREISDHV ENSP00000472940/1-853 ANPVYGRYDQ YKTPMENIGL QDSLLSRFDL LFIMLDQMDP EQDREISDHV ENSBTAP00000014194/1-808 ANPVYGRYDQ YKTPMENIGL QDSLLSRFDL LFIMLDQMDP EQDREISDHV bmy_03084T0/1-857 ANPVYGRYDQ YKTPMENIGL QDSLLSRFDL LFIMLDQMDP EQDREISDHV BACU015855/1-808 ANPVYGRYDQ YKTPMENIGL QDSLLSRFDL LFIMLDQMDP EQDREISDHV 551 600 ENSTTRP00000003488/1-801 LRMHRYRAPG EQDGDAMPLG SAVDILATED PNFSQEDQQD TQIYEKHDSL ENSP00000472940/1-853 LRMHRYRAPG EQDGDAMPLG SAVDILATDD PNFSQEDQQD TQIYEKHDNL ENSBTAP00000014194/1-808 LRMHRYRAPG EQDGDAMPLG SAVDILATDD PNFSPDDQQD TQIYEKHDNL bmy_03084T0/1-857 LRMHRYRAPG EQDGDAMPLG SAVDILATED PNFSQEDQQD TQIYEKHDNL BACU015855/1-808 LRMHRYRAPG EQDGDAMPLG SAVDILATED PNFSQEDQQD TQIYEKHDSL 601 650 ENSTTRP00000003488/1-801 LHGAKKKKEK MVSAAFMRKY IHVAKIIKPI LTQESAAYIA EEYSCLRSQD ENSP00000472940/1-853 LHGTKKKKEK MVSAAFMKKY IHVAKIIKPV LTQESATYIA EEYSRLRSQD ENSBTAP00000014194/1-808 LHGMKKKKEK MVSAAFMRKY IHVAKIIKPV LTQESAAYIA EEYSRLRSQD bmy_03084T0/1-857 LHGAKKKKEK MVSAAFMRKY IHVAKIIKPV LTQESAAYIA EEYSCLRSQD BACU015855/1-808 LHGAKKKKEK MVSAAFMRKY IHVAKIIKPV LTQESAAYIA EEYSCLRSQD 651 700 ENSTTRP00000003488/1-801 SMSSDTARTS PVTARTLETL IRLATAHAKA RMSKTVDMQD AEEAVELVQY ENSP00000472940/1-853 SMSSDTARTS PVTARTLETL IRLATAHAKA RMSKTVDLQD AEEAVELVQY ENSBTAP00000014194/1-808 SMSSDTARTS PVTARTLETL IRLATAHAKA RMSKTVDLQD AEEAVELVQY bmy_03084T0/1-857 SMGSDTARTS PVTARTLETL IRLATAHAKA RMSKTVDLQD AEVAVELVQY BACU015855/1-808 SMGSDTARTS PVTARTLETL IRLATAHAKA RMSKTVDLQD AEEAVELVQY 701 750 ENSTTRP00000003488/1-801 AYFKKVLEKE KKRKKQSEDE SETEDEVEKS QEDQEQKRKR RKTRHSDAKD ENSP00000472940/1-853 AYFKKVLEKE KKRKKRSEDE SETEDEEEKS QEDQEQKRKR RKTRQPDAKD ENSBTAP00000014194/1-808 AYFKKVLEKE KKRKKRSEDE SDAEDEVEKS QEDQEQKTKR RRICPSDAKE bmy_03084T0/1-857 AYFKKVLEKE KKRKKQSEDE SETEDEAEKS QEDQEQKRKR RKTRHSDAKD BACU015855/1-808 AYFKKVLEKE KKRKKQSEDE SETEDEAEKS QEDQEQKRKR RKTRHSDAKD 751 800 ENSTTRP00000003488/1-801 GDSYDPYDFS DTEEEMPQVH TPKATDSQET KESQKAELSE SRLKAFKAAL ENSP00000472940/1-853 GDSYDPYDFS DTEEEMPQVH TPKTADSQET KESQKVELSE SRLKAFKVAL ENSBTAP00000014194/1-808 GDSYDPYDFT NTEEEMPQVH TPKATDSQET KESQKVELSE SRLKAFKAAL bmy_03084T0/1-857 GDSYDPYDFS DTEEEMPQVH TPKATDSQET KESQKVELSE SRLKAFKVAL BACU015855/1-808 GDSYDPYDFS DTEEEMPQVH TPKATDSQET KESQKVELSE SRLKAFKVAL 801 850 ENSTTRP00000003488/1-801 LGVFQEAHAQ SVGMSRLTES INRDNEEPFS SAEIQAALSR MQDDNQVMVS ENSP00000472940/1-853 LDVFREAHAQ SIGMNRLTES INRDSEEPFS SVEIQAALSK MQDDNQVMVS ENSBTAP00000014194/1-808 LEVFREAHAQ SVGMNRLTES VNRDNEEPFS SAEIQAALSR MQDDNQVMVS bmy_03084T0/1-857 LEVFQEAHAQ SVGMNRLTES INRDHEEPFS SAEIQAALSR MQDDNQVMVS BACU015855/1-808 LEVFREAHAQ SVGMNRLTES INQDNEEPFS SAEIQAALSR MQDDNQVMVS 851 900 ENSTTRP00000003488/1-801 EGIVFLI ENSP00000472940/1-853 EGIIFLI ENSBTAP00000014194/1-808 EGIVFLI bmy_03084T0/1-857 EGIVFLI BACU015855/1-808 EGIVFLI