KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:52:39 2014 Check: 00 .. Name: bmy_13551T0/1-290 Len: 520 Check: 178 Weight: 1.00 Name: ENSTTRP00000016016/1-492 Len: 520 Check: 7828 Weight: 1.00 Name: BACU007027/1-394 Len: 520 Check: 9115 Weight: 1.00 Name: ENSP00000264637/1-490 Len: 520 Check: 8805 Weight: 1.00 Name: ENSBTAP00000014236/1-511 Len: 520 Check: 9938 Weight: 1.00 // 1 50 bmy_13551T0/1-290 ---------- ---------- APPWRRLIPA SFLSLQGPPD RTRFRSYSPS ENSTTRP00000016016/1-492 MEQKPSKVEC GSDPEENSAR SPDGKRKRKN GQCSL----- KTSMSGYIPS BACU007027/1-394 ---------- ------SSAR SPDGKRKRKN GQCSL----- KTSMSGYIPS ENSP00000264637/1-490 MEQKPSKVEC GSDPEENSAR SPDGKRKRKN GQCSL----- KTSMSGYIPS ENSBTAP00000014236/1-511 MEQKPSKVEC GSDPEESSTR SPDGKRKRKN GQCSL----- KTSMSGYIPS 51 100 bmy_13551T0/1-290 ---------- -----PGPPH R--------- ---------- -PGFPPNPTT ENSTTRP00000016016/1-492 YLDKDEQCVV CGDKATGYHY RCITCEGCKG FFRRTIQKNL HPTYSCKYDS BACU007027/1-394 YLDKDEQCVV CGDKATGYHY RCITCEGCKG FFRRTIQKNL HPTYSCKYDS ENSP00000264637/1-490 YLDKDEQCVV CGDKATGYHY RCITCEGCKG FFRRTIQKNL HPTYSCKYDS ENSBTAP00000014236/1-511 YLDKDEQCVV CGDKATGYHY RCITCEGCKG FFRRTIQKNL HPTYSCKYDS 101 150 bmy_13551T0/1-290 CHSLAPLT-- ---------- ---------- ---------- ---------- ENSTTRP00000016016/1-492 CCVIDKITRN QCQLCRFKKC IAVGMAMDLV LDDSKRVAKR KLIEQNRERR BACU007027/1-394 CCVIDKITRN QCQLCRFKKC IAVGMAMDLV LDDSKRVAKR KLIEQNRERR ENSP00000264637/1-490 CCVIDKITRN QCQLCRFKKC IAVGMAMDLV LDDSKRVAKR KLIEQNRERR ENSBTAP00000014236/1-511 CCVIDKITRN QCQLCRFKKC IAVGMAMDLV LDDSKRVAKR KLIEQNRERR 151 200 bmy_13551T0/1-290 ---------- ARP-----PW GAGHGVKGQV LRRAP----- WVLGPRAWVA ENSTTRP00000016016/1-492 RKEEMIRSLQ QRPEPTPEEW DLIH-VATEA HRSTNAQGSH WKQRRKFLPD BACU007027/1-394 RKEEMIRSLQ QRPEPTPEEW DLIH-VATEA HRSTNAQGSH WKQRRKFLPD ENSP00000264637/1-490 RKEEMIRSLQ QRPEPTPEEW DLIH-IATEA HRSTNAQGSH WKQRRKFLPD ENSBTAP00000014236/1-511 RKEEMIRSLQ QRPEPTPEEW DLIH-VATEA HRSTNAQGSH WKQRRKFLPD 201 250 bmy_13551T0/1-290 GGGRP--VGV PGGP------ -------VCP ---------- ---------- ENSTTRP00000016016/1-492 DIGQSPIVSM PDGDKVDLEA FSEFTKIITP AITRVVDFAK KLPMFSELPC BACU007027/1-394 DIGQSPIVSM PDGDKVDLEA FSEFTKIITP AITRVVDFAK KLPMFSELPC ENSP00000264637/1-490 DIGQSPIVSM PDGDKVDLEA FSEFTKIITP AITRVVDFAK KLPMFSELPC ENSBTAP00000014236/1-511 DIGQSPIVSM PDGDKVDLEA FSEFTKIITP AITRVVDFAK KLPMFSELPC 251 300 bmy_13551T0/1-290 ---------- ---------- ----PQS--- ---------- -------LGV ENSTTRP00000016016/1-492 EDQIILLKGC CMEIMSLRAA VRYDPESDTL TLSGEMAVKR EQLKNGGLGV BACU007027/1-394 EDQIILLKGC CMEIMSLRAA VRYDPESDTL TLSGEMAVKR EQLKNGGLGV ENSP00000264637/1-490 EDQIILLKGC CMEIMSLRAA VRYDPESDTL TLSGEMAVKR EQLKNGGLGV ENSBTAP00000014236/1-511 EDQIILLKGC CMEIMSLRAA VRYDPESDTL TLSGEMAVKR EQLKNGGLGV 301 350 bmy_13551T0/1-290 LEGI------ -LDGIKVNGT E--------- --AKQGGVWV RPRGEQCQVT ENSTTRP00000016016/1-492 VSDAIFELGK SLSAFNLDDT EVALLQAVLL MSTXXXXXXX XXXXXXXXXX BACU007027/1-394 VSDAIFELGK SLSAFNLDDT EVALLQAVLL MSTDRSGLLC VDKIEKSQEA ENSP00000264637/1-490 VSDAIFELGK SLSAFNLDDT EVALLQAVLL MSTDRSGLLC VDKIEKSQEA ENSBTAP00000014236/1-511 VSDAIFELGK SLSAFNLDDT EVALLQAVLL MSTDRSGLLC VDKIEKSQEA 351 400 bmy_13551T0/1-290 RWKA------ -KKKERPMFP EN--QHEREV QSSILYKGAA AEGRPGGSLG ENSTTRP00000016016/1-492 XXXXXXXXXX XXXXXXXXXX XXXXXXEREV QSSILYKGAA AEGRPGGSLG BACU007027/1-394 YLLAFEHYVN HRKHNIPHFW PKLLMKVTDL ---------- ---------- ENSP00000264637/1-490 YLLAFEHYVN HRKHNIPHFW PKLLMKEREV QSSILYKGAA AEGRPGGSLG ENSBTAP00000014236/1-511 YLLAFEHYVN HRKHNIPHFW PKLLMKEREV QSSILYKGAA AEGRPGGSLG 401 450 bmy_13551T0/1-290 VHPEGQQLLG MHVVQGPQVR QLEQQLGEAG SLRGPVLQHQ SPKSPQQRLL ENSTTRP00000016016/1-492 VHPEGQQLLG MHVVQGPQVR QLEQQLGEAG SLRGPVLQHQ SPKSPQQRLL BACU007027/1-394 ---------- ---------- ---------- ---------- -------RMI ENSP00000264637/1-490 VHPEGQQLLG MHVVQGPQVR QLEQQLGEAG SLQGPVLQHQ SPKSPQQRLL ENSBTAP00000014236/1-511 VHPEGQQLLG VHVVQGPQVR QLEQQLGEAG SLRGPVLQHQ SPKSPQQRLL 451 500 bmy_13551T0/1-290 ELLHRSGILH ARAVCGEDDG SEAGSLSSSD ----EEDP-- -EACEDAALA ENSTTRP00000016016/1-492 ELLHRSGILH ARAVCGEDDG SEAGSLSSSD ----EEDP-- -EACEDAAGH BACU007027/1-394 GACHASRFLH MKVECPTE-- ---------- ----LFPPLF LEVFEDQEV- ENSP00000264637/1-490 ELLHRSGILH ARAVCGEDDS SEADSPSSS- ----EEEP-- -EVCEDLAGN ENSBTAP00000014236/1-511 ELLHRSGILH SRAVCGEDDS SEADSLSSSD SDEEEEDA-- -EVCEDAAVA 501 550 bmy_13551T0/1-290 MRPLPEAPQR ADGEGGGGGT ENSTTRP00000016016/1-492 AASPR----- ---------- BACU007027/1-394 ---------- ---------- ENSP00000264637/1-490 AASP------ ---------- ENSBTAP00000014236/1-511 TQPPPEAPQR ADGEGAGGGT