KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:52:40 2014 Check: 00 .. Name: ENSTTRP00000015712/1-680 Len: 730 Check: 6116 Weight: 1.00 Name: ENSBTAP00000014266/1-694 Len: 730 Check: 805 Weight: 1.00 Name: ENSP00000355607/1-680 Len: 730 Check: 7128 Weight: 1.00 Name: bmy_05068T0/1-680 Len: 730 Check: 948 Weight: 1.00 Name: BACU005019/1-621 Len: 730 Check: 9330 Weight: 1.00 // 1 50 ENSTTRP00000015712/1-680 ---------- ---MDSSSSS SSCFSVGSTS PGAVVLLYSK ELKKWDPFED ENSBTAP00000014266/1-694 QRIAGHARDN SRSMDHSSSS NSCFSVGSTS PGAVVLLYSE EIKKRRTSQE ENSP00000355607/1-680 ---------- ---MESSSSS NSYFSVGPTS PSAVVLLYSK ELKKWDEFED bmy_05068T0/1-680 ---------- ---MDSSRSS SSCFSVGSTS PGAVVLLYSR ELRKWDEFED BACU005019/1-621 ---------- ---------- ---------- ---------- ---------- 51 100 ENSTTRP00000015712/1-680 ALEERRHVSD LKFAMKCYTP LVYKGITPCK PSDIKCSVLN SEEIHYVIK- ENSBTAP00000014266/1-694 IMKINNHKRL LGFSNDCVDD LFYLRVVSCK MMYIRCSVFN LQELHLVLKI ENSP00000355607/1-680 ILEERRHVSD LKFAMKCYTP LVYKGITPCK PIDIKCSVLN SEEIHYVIK- bmy_05068T0/1-680 VLEERRHVSD LKFAMKCYTP LVYKGITPCK PSEIKCSVLN SEEIHYVIK- BACU005019/1-621 ---------- ----MKCYTP LVYKGITPCK PSEIKCSVLN SEEIHYVIK- 101 150 ENSTTRP00000015712/1-680 QXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000014266/1-694 LLSKESLQPV EVLREEACEI LDEMSHKLRL GAIRFFAFAL SKIFKQIFSK ENSP00000355607/1-680 QLSKESLQSV DVLREEVSEI LDEMSHKLRL GAIRFCAFTL SKVFKQIFSK bmy_05068T0/1-680 QLSRESLQSP EVLREEACEI LDEMNHKLRL GAIRFCAFAL SKVFKQIFSK BACU005019/1-621 QLSRESLQSA EVLREEACEI LDEMNHKLRL GAIRFCAFAL SKVFKQIFSK 151 200 ENSTTRP00000015712/1-680 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000014266/1-694 VRVNEEGIQK LQRAIQEHPV VLLPSHRSYI DFLMLSFLLY NYDLPVPVIA ENSP00000355607/1-680 VCVNEEGIQK LQRAIQEHPV VLLPSHRSYI DFLMLSFLLY NYDLPVPVIA bmy_05068T0/1-680 VCVNEEGIQK LQRAIQEHPV VLLPSHRSYI DFLMLSFLLY NYDLPVPVIA BACU005019/1-621 VCVNEEGIQK LQRAIQEHPV VLLPSHRSYI DFLMLSFLLY NYDLPVPVMQ 201 250 ENSTTRP00000015712/1-680 XXXXFLGMKM VGELLRMSGA FFMRRTFGGD QLYWAVFSEY VKTMLRXXXX ENSBTAP00000014266/1-694 AGMDFLGMKM VGELLRMSGA FFMRRTFGGN KLYWAVFSEY VKTMLRNGYA ENSP00000355607/1-680 AGMDFLGMKM VGELLRMSGA FFMRRTFGGN KLYWAVFSEY VKTMLRNGYA bmy_05068T0/1-680 AGMDFLGMKM VGELLRMSGA FFMRRTFGGN KLYWAVFSQY VKTMLRNGYA BACU005019/1-621 E--------- ---------- ---------- ---W------ ------NGYA 251 300 ENSTTRP00000015712/1-680 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000014266/1-694 PVEFFLEGTR SRSAKTLTPK FGLLNIVMEP FFKREVFDTY LVPISISYDR ENSP00000355607/1-680 PVEFFLEGTR SRSAKTLTPK FGLLNIVMEP FFKREVFDTY LVPISISYDK bmy_05068T0/1-680 PVEFFLEGTR SRSAKTLTPK FGLLNIVMEP FFKREVFDTY LVPISISYDR BACU005019/1-621 PVEFFLEGTR SRSAKTLTPK FGLLNIVMEP FFKREVFDTY LVPISISYDR 301 350 ENSTTRP00000015712/1-680 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000014266/1-694 ILEETLYAYE LLGVPKPKES TTGLLKARRI LSEKFGNIHV YFGDPVSLRS ENSP00000355607/1-680 ILEETLYVYE LLGVPKPKES TTGLLKARKI LSENFGSIHV YFGDPVSLRS bmy_05068T0/1-680 ILEETLYAYE LLGIPKPKES TTGLLKARRI LSEKFGNIHV YFGDPMSLRS BACU005019/1-621 ILEETLYAYE LLGVPKPKES TTGLLKARKI LSEKFGNIHV YFGDPVSLRS 351 400 ENSTTRP00000015712/1-680 XXXXXXXXXX XXXXXXYIPQ KQSEDMHAFV TEVAYKMQLL QIQNLVLSPW ENSBTAP00000014266/1-694 LAAGRMGRSP YNLVPRYIPQ KQSEEMHTFV TEVAYKMQLL QIQNLVLSPW ENSP00000355607/1-680 LAAGRMSRSS YNLVPRYIPQ KQSEDMHAFV TEVAYKMELL QIENMVLSPW bmy_05068T0/1-680 LAAGRMRQSA YNLVPRYIPQ KQSEDMHAFV TEVAYXMQLL QIQNLVLSPW BACU005019/1-621 LAAGRMRQSP YNLVPRYIPQ KQSEDMHAFV TEVAYRMQLL QIQNLVLSPW 401 450 ENSTTRP00000015712/1-680 PLIVAVLLQN RPSMDFDALL EKTLWLKGLA QAFGGFLTWP DNELAEEVVQ ENSBTAP00000014266/1-694 PLIVAVLLQN RPSMDFDALL EKTLWLKGLT QAFGGFLTWP DNEPAEAVIQ ENSP00000355607/1-680 TLIVAVLLQN RPSMDFDALV EKTLWLKGLT QAFGGFLIWP DNKPAEEVVP bmy_05068T0/1-680 PLIVAVLLQN RPSMDFDALL EKTLWLKGLA QAFGGFLTWP DSELAEEVVQ BACU005019/1-621 PLIVAVLLQN RPSMDFDALL EKTLWLKGLA QAFGGFLTWP DSELAEEVVQ 451 500 ENSTTRP00000015712/1-680 SSLLLHSNIV SLVKDRVTLK VDSGGPEVVD GLVFQHVTLL VCSAYRNQLL ENSBTAP00000014266/1-694 SSILLHSNIV SLVKDRVILK MECGDSELVD GLIFQHITLL MCLAYRNQLL ENSP00000355607/1-680 ASILLHSNIA SLVKDQVILK VDSGDSEVVD GLMLQHITLL MCSAYRNQLL bmy_05068T0/1-680 SSLLLHSNVV SLAKDRVTLK VDSGDPEVVD GLVFQHVTLL VCSAYRNQLL BACU005019/1-621 SSLLLHSNVV SLAKDRVTLK VDSGDAEVVD GLVFQHVTLL MCSAYRNQLL 501 550 ENSTTRP00000015712/1-680 NVFVRPSLVA VALQMTPGFR KEDVYSCFRF LCNVFSDEFI FLPGNALKDF ENSBTAP00000014266/1-694 NVFVRPSLVA MALQMTPGFR KEDVYSCFRF LCSVFSDEFI FLPGNALKDF ENSP00000355607/1-680 NIFVRPSLVA VALQMTPGFR KEDVYSCFRF LRDVFADEFI FLPGNTLKDF bmy_05068T0/1-680 NIFVRPSLVA VALQMTPGFR KEDVYSCFRF LCNVFSDEFI XLPGNALKDF BACU005019/1-621 NTFVRPSLVA VALQMTPGFR KEDVYSCFRF LCNVFSDEFI FLPGNALKDF 551 600 ENSTTRP00000015712/1-680 EEGCYLLCKS EATQVTTRDI LVTEKGNTVL EFLIGLFKPF VESYQXXXXX ENSBTAP00000014266/1-694 EEGCYLLCKS EAIQVMTRDI LVTEKGNSVL EFLIGLFKPF VESYQIICKY ENSP00000355607/1-680 EEGCYLLCKS EAIQVTTKDI LVTEKGNTVL EFLVGLFKPF VESYQIICKY bmy_05068T0/1-680 EEGCYLLCKS EATQVTTRDI LVTEKGNTVL EFLIXLFKPF VESYQIICKY BACU005019/1-621 EEGCYLLCKS EATQVTTRDI LVTEKGNTVL EFLIGLFKPF VESYQIICKC 601 650 ENSTTRP00000015712/1-680 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX SQCYDVLSSD VQKNALAAFV ENSBTAP00000014266/1-694 LLNEEEDYFT EKQYFIRVRK FTSQLLDQGA SQCYDVLSSD VQKNALAAFV ENSP00000355607/1-680 LLSEEEDHFS EEQYLAAVRK FTSQLLDQGT SQCYDVLSSD VQKNALAACV bmy_05068T0/1-680 LLNEEEDYFT EKQYLVKVRK FTGQLLDQGA SQCYDVLSSD VQKNALAAFV BACU005019/1-621 LLNEEEDYFT EKQYLVKVRK FTGQLLDQGA SQCYDVLSSD VQKNALAAFV 651 700 ENSTTRP00000015712/1-680 RLGVVEKKKV NNDYIFTVNE PATTKLEEML ---GGKTPVG ---------- ENSBTAP00000014266/1-694 RLGVVEKKKV NNDYIFNVNE PATTKLEEML ---GCKTPVG ---------- ENSP00000355607/1-680 RLGVVEKKKI NNNCIFNVNE PATTKLEEML ---GCKTPIG ---------- bmy_05068T0/1-680 RLGVVEKKKV NNDYIFTVNE PATTKLEEML ---GGKTPVG ---------- BACU005019/1-621 RLGVVQKKKV NNDYIFTVNE PATTKLEEML ALTGGQLRAG HCHESLTNVS 701 750 ENSTTRP00000015712/1-680 ---------- ---------- --KLATAKL- ENSBTAP00000014266/1-694 ---------- ---------- --KPATAKL- ENSP00000355607/1-680 ---------- ---------- --KPATAKL- bmy_05068T0/1-680 ---------- ---------- --KPATAKL- BACU005019/1-621 SFDPRDDRAV VPVKIILSLS TRKASCTDLP