KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:52:42 2014 Check: 00 .. Name: BACU014007/1-469 Len: 759 Check: 4930 Weight: 1.00 Name: ENSP00000312411/1-755 Len: 759 Check: 7282 Weight: 1.00 Name: ENSBTAP00000014279/1-601 Len: 759 Check: 5470 Weight: 1.00 Name: bmy_03538T0/1-601 Len: 759 Check: 3795 Weight: 1.00 Name: ENSTTRP00000016292/1-698 Len: 759 Check: 4093 Weight: 1.00 // 1 50 BACU014007/1-469 ---------- ---------- ---------- ---------- ---------- ENSP00000312411/1-755 MAGCIPEEKT YRRFLELFLG EFRGPCGGGE PEPEPEPEPE PEPESEPEPE ENSBTAP00000014279/1-601 ---------- ---------- ---------- ---------- ---------- bmy_03538T0/1-601 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000016292/1-698 MAGCSPEEKT YRRFLELFLG EFRGPCGGGE PEPEPEPE-- ----SEPEPE 51 100 BACU014007/1-469 ---------- ---------- ---------- ---------- ---------- ENSP00000312411/1-755 PELVEAEAAE ASVEEPGEEA ATVAATEEGD QEQDPEPEEE AAVEGEEEEE ENSBTAP00000014279/1-601 ---------- ---------- ---------- ---------- ---------- bmy_03538T0/1-601 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000016292/1-698 PELVAAEAPE ASVEEPGEEA ATVAATEEGE QEQEQDPEPE EEVV------ 101 150 BACU014007/1-469 ---------- ---------- ---------- ---------- ------MAQK ENSP00000312411/1-755 GAATAAAAPG HSAVPPPPPQ LPPLPPLPRP LSERITREEV EGESLDLCLQ ENSBTAP00000014279/1-601 ---------- ---------- ---------- ---------- ---------- bmy_03538T0/1-601 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000016292/1-698 ---------- ---------- ---------- ---------- ------AAEG 151 200 BACU014007/1-469 GLWGTKSQTW FAT-LYYVNE KKKINKNLET RFLNIVTERR ILNKKTEIET ENSP00000312411/1-755 QLYKYNCPSF LAAALARATS DEVLQSDLSA HYIPKETDGT --EGTVEIET ENSBTAP00000014279/1-601 -----NCPSF LAAALARATS DEVLQSDLSA HYIPKETDGT --EGTVEIET bmy_03538T0/1-601 -----NCPSF LAAALARATS DEVLQSDLSA HYIPKETDGT --EGTVEIET ENSTTRP00000016292/1-698 EEEEANCPSF LAAALARATS DEVLQSDLSA HYIPKETDGT --EGTVEIET 201 250 BACU014007/1-469 VKLARSVFSK LHEICCSWVK DFPLRRRPQL YYETSIHAIK NMRRKMEDKH ENSP00000312411/1-755 VKLARSVFSK LHEICCSWVK DFPLRRRPQL YYETSIHAIK NMRRKMEDKH ENSBTAP00000014279/1-601 VKLARSVFSK LHEICCSWVK DFPLRRRPQL YYETSIHAIK NMRRKMEDKH bmy_03538T0/1-601 VKLARSVFSK LHEICCSWVK DFPLRRRPQL YYETSIHAIK NMRRKMEDKH ENSTTRP00000016292/1-698 VKLARSVFSK LHEICCSWVK DFPLRRRPQL YYETSIHAIK NMRRKMEDKH 251 300 BACU014007/1-469 VCIPDFNMLF NLEDQEEQAY FAVFDGHGGV DAAIYASIHL HVNLVRQEMF ENSP00000312411/1-755 VCIPDFNMLF NLEDQEEQAY FAVFDGHGGV DAAIYASIHL HVNLVRQEMF ENSBTAP00000014279/1-601 VCIPDFNMLF NLEDQEEQAY FAVFDGHGGV DAAIYASIHL HVNLVRQETF bmy_03538T0/1-601 VCIPDFNMLF NLEDQEEQAY FAVFDGHGGV DAAIYASIHL HVNLVRQEMF ENSTTRP00000016292/1-698 VCIPDFNMLF NLEDQEEQAY FAVFDGHGGV DAAIYASIHL HVNLVRQEMF 301 350 BACU014007/1-469 PHDPAEALCR AFRVTDERFV QKAARESLRC GTTGVVTFIR GNMLHVAWVG ENSP00000312411/1-755 PHDPAEALCR AFRVTDERFV QKAARESLRC GTTGVVTFIR GNMLHVAWVG ENSBTAP00000014279/1-601 PHDPAEALCR AFRVTDERFV QKAARESLRC GTTGVVTFIR GNMLHVAWVG bmy_03538T0/1-601 PHDPAEALCR AFRVTDERFV QKAARESLRC GTTGVVTFIR GNMLHVAWVG ENSTTRP00000016292/1-698 PHDPAEALCR AFRVTDERFV QKAARESLRC GTTGVVTFIR GNMLHVAWVG 351 400 BACU014007/1-469 DSQVMLVRKG QAVELMKPHK PDREDEKQRI EALGGCVVWF GAWRVNGSLS ENSP00000312411/1-755 DSQVMLVRKG QAVELMKPHK PDREDEKQRI EALGGCVVWF GAWRVNGSLS ENSBTAP00000014279/1-601 DSQVMLVRKG QAVELMKPHK PDREDEKQRI EALGGCVVWF GAWRVNGSLS bmy_03538T0/1-601 DSQVMLVRKG QAVELMKPHK PDREDEKQRI EALGGCVVWF GAWRVNGSLS ENSTTRP00000016292/1-698 DSQVMLVRKG QAVELMKPHK PDREDEKQRI EALGGCVVWF GAWRVNGSLS 401 450 BACU014007/1-469 VSRAIGDAEH KPYICGDADS ASTVLDGTED YLILACDGFY DTVNPDEAVK ENSP00000312411/1-755 VSRAIGDAEH KPYICGDADS ASTVLDGTED YLILACDGFY DTVNPDEAVK ENSBTAP00000014279/1-601 VSRAIGDAEH KPYICGDADS ASTVLDGTED YLILACDGFY DTVNPDEAVK bmy_03538T0/1-601 VSRAIGDAEH KPYICGDADS ASTVLDGTED YLILACDGFY DTVNPDEAVK ENSTTRP00000016292/1-698 VSRAIGDAEH KPYICGDADS ASTVLDGTED YLILACDGFY DTVNPDEAVK 451 500 BACU014007/1-469 VVSDHLKENN GDSSMVAHKL VASARDAGSS DNITVIVVFL RDMNKAVNVS ENSP00000312411/1-755 VVSDHLKENN GDSSMVAHKL VASARDAGSS DNITVIVVFL RDMNKAVNVS ENSBTAP00000014279/1-601 VVSDHLKENN GDSSMVAHKL VASARDAGSS DNITVIVVFL RDMNKAVNVS bmy_03538T0/1-601 VVSDHLKENN GDSSMVAHKL VASARDAGSS DNITVIVVFL RDMNKAVNVS ENSTTRP00000016292/1-698 VVSDHLKENN GDSSMVAHKL VASARDAGSS DNITVIVVFL RDMNKAVNVS 501 550 BACU014007/1-469 EESDWTENSF QGGQEDGGSS K--------- ---------- -------VNT ENSP00000312411/1-755 EESDWTENSF QGGQEDGGDD KENHGECKRP WPQHQCSAPA DLGYDGRVDS ENSBTAP00000014279/1-601 EDSDWTENSF QGGQEAGGDD KESHGECKRP WPQHQCSAPA DLGYEGRVDS bmy_03538T0/1-601 EESDWTENSF QGGQEDGGDD KENHGECKRP WPQHQCSAPA DLGYDGRVDS ENSTTRP00000016292/1-698 EESDWTENSF QGGQEDGGDD KENHGECKRP WPQHQCSAPA DLGYDGRVDS 551 600 BACU014007/1-469 FSK------- ---------- ---------- ---------- ---------D ENSP00000312411/1-755 FTDRTSLSPG SQINVLEDPG YLDLTQIEAS KPHSAQFLLP VEMFGPGAPK ENSBTAP00000014279/1-601 FTDRTSLSPG SQGNVLEDPG YLDLTQIETS KPHGAQFLPP VEMFGPGAPK bmy_03538T0/1-601 FTDRTSLSPG SQINVLEDPG YLDLTQIEAS KPHSAQFLPP VEMFGPGAPK ENSTTRP00000016292/1-698 FTDRTSLSPG SQVNVLEDPG YLDLTQIEAS KPHSAQFLPP VERFGPGAPK 601 650 BACU014007/1-469 NVNNVN---- ---------- ---------- -VNTESDSDH IYSGTTMS-- ENSP00000312411/1-755 KANLINELMM EKKSVQSSLP EWSGAGEFPT AFNLGSTGEQ IYRMQSLSPV ENSBTAP00000014279/1-601 RANLINELIM EKKSVPSSLP EWSGAGEVLS SFNVGSTGQQ VCSMGSLPPV bmy_03538T0/1-601 KANLINELIM EKKSVQSSLP EQSGAGEFPS SFNLGSAGQQ ICRMESLSPV ENSTTRP00000016292/1-698 KANFINELIM EKKSVQSSLP ERSGAGEFPS SFNLGSTGQQ ICRMESLSPV 651 700 BACU014007/1-469 -TWWYSVTLH LHDNHDNHTP LLEHCASKKR NIQRADEMMH ---------- ENSP00000312411/1-755 CSGLENEQFK SPGNRVSRLS HLRHHYSKKW HRFRFNPKFY SFLSAQEPSH ENSBTAP00000014279/1-601 CSRLENEQFK FLGKRVSRLS HLHYHYSKRR HGFRFNPKFY SFLSAQEPSH bmy_03538T0/1-601 CSRLENEQFK FLGKRVSRLS RLHYHYSKRR HGFRFNPKFY SFLSAREPSH ENSTTRP00000016292/1-698 CSRLENEQFK FLGKRVSRLY RLHYHYSKRR HGFRFNPKFY SFLSVREPSH 701 750 BACU014007/1-469 ---------- ---KEVKCLQ IKLLW----F KYF------- ------LPHQ ENSP00000312411/1-755 KIGTSLSSLT GSGKRNR-IR SSLPWRQNSW KGYSEN-MRK LRKTHDIPCP ENSBTAP00000014279/1-601 KTGSSLSSLI RNGKRNSMLR SSLPWRQNSW KGYSENVMRK PKKSNDPAHP bmy_03538T0/1-601 KTGTSLSSLI RSGKRNRMLR SSLPWRQNSW KGYSENMMGK LKKSNAIPYP ENSTTRP00000016292/1-698 KTGTSLSSLI RSGKRNRMLR SSLPWRQNSW KGYSENMMGK LKKSNAIPYP 751 800 BACU014007/1-469 RLAEAL--- ENSP00000312411/1-755 DLPWSYKIE ENSBTAP00000014279/1-601 ELPWSFKI- bmy_03538T0/1-601 ALPWSFKI- ENSTTRP00000016292/1-698 ALPWSFKI-