KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:52:44 2014 Check: 00 .. Name: ENSP00000347754/1-516 Len: 525 Check: 9899 Weight: 1.00 Name: ENSBTAP00000014292/1-484 Len: 525 Check: 3094 Weight: 1.00 Name: ENSTTRP00000011446/1-517 Len: 525 Check: 2432 Weight: 1.00 Name: bmy_19845T0/1-483 Len: 525 Check: 1978 Weight: 1.00 Name: BACU004004/1-483 Len: 525 Check: 1039 Weight: 1.00 // 1 50 ENSP00000347754/1-516 MLGKLAMLLW VQQALLALLL PTLLAQ-GEA R-----RSRN TTRPALLRLS ENSBTAP00000014292/1-484 ------MLPW LPRALLGLLL PTLLAPWGEA KHRGDPQPPN ASRPALLRLS ENSTTRP00000011446/1-517 ------MLLW VPQALLALLL PTLLAQ-GEA KHRRGPQARN ASRPALLRLS bmy_19845T0/1-483 ------MLLW VPQALLALLL PTLLAQ-GEA KHRRGPQARD ASRPALLRLS BACU004004/1-483 ------MLPW VPQVLLALLL PTLLAQ-GEA KHRRGPQARD ASRPALLRLS 51 100 ENSP00000347754/1-516 DYLLTNYRKG VRPVRDWRKP TTVSIDVIVY AILNVDEKNQ VLTTYIWYRQ ENSBTAP00000014292/1-484 DHLLANYKKG VRPVRDWRTP TTVSIDVIVY AILSVDEKNQ VLTTYIWYRQ ENSTTRP00000011446/1-517 DHLLANYKKG VRPVRDWRTP TTVSIDVIVY AILSVDEKNQ VLTTYIWYRQ bmy_19845T0/1-483 DHLLANYKKG VRPVRDWRTP TTVSIDVIIY AILSVDEKNQ VLTTYIWYRQ BACU004004/1-483 DHLLANYKKG VRPVRDWRTP TTVSIDVIVY AILNVDEKNQ VLTTYIWYRQ 101 150 ENSP00000347754/1-516 YWTDEFLQWN PEDFDNITKL SIPTDSIWVP DILINEFVDV GKSPNIPYVY ENSBTAP00000014292/1-484 YWTDEFLQWD PEDFDNITKL SIPTDSIWVP DILINEFVDV GKSPNIPYVY ENSTTRP00000011446/1-517 XXXXXXXXXX XEDFDNITKL SIPTDSIWVP D-LINEFVDV GKSPNIPYVY bmy_19845T0/1-483 YWTDEFLQWN PEDFDNITKL SIPTDSIWVP DILINEFVDV GKSPNIPYVY BACU004004/1-483 YWTDEFLQWN PEDFDNITKL SIPTDSIWVP DILINEFVDV GKSPNIPYVY 151 200 ENSP00000347754/1-516 IRHQGEVQNY KPLQVVTACS LDIYNFPFDV QNCSLTFTSW LHTIQDINIS ENSBTAP00000014292/1-484 VRHHGEVQNY KPLQVMTACT LDIYNFPFDI QNCSLTFTSW LHTIQDINIS ENSTTRP00000011446/1-517 VRHHGEVQNY KPLQVVTACS LDIYNFPFDV QNCSLTFTSW LHTIQDINLS bmy_19845T0/1-483 VQHHGEVQNY KPLQVVTACS LDIYSFPFDV QNCSLTFTSW LHTIQDINIS BACU004004/1-483 VQHHGEVQNY KPLQVVTACS LDIYNFPFDV QNCSLTFTSW LHTIQDINIS 201 250 ENSP00000347754/1-516 LWRLPEKVKS DRSVFMNQGE WELLGVLPYF REFSMESSNY YAEMKFYVVI ENSBTAP00000014292/1-484 LWRLPEKVKF DRSVFMNQGE WELLGVLTQF QEFSIESSDS YAEMKFYVVI ENSTTRP00000011446/1-517 LWRLPEKVKL DRSIFMNQGE WELLGVLTQF QEFSMESSDC YAEMKFYVVI bmy_19845T0/1-483 LWRLPEKVKL DRSIFMNQGE WELLGVLTQF QEFSIESSDC YAEMKFYVVI BACU004004/1-483 LWRLPEKVKL DRSIFMNQGE WELLGVLSQF QEFSIESSDC YAEMKFYVVI 251 300 ENSP00000347754/1-516 RRRPLFYVVS LLLPSIFLMV MDIVGFYLPP NSGERVSFKI TLLLGYSVFL ENSBTAP00000014292/1-484 RRRPLFYAVS LLLPSIFLMV VDIVGFYLPP DSGERVSFKI TLLLGYSVFL ENSTTRP00000011446/1-517 RRRPLFYAVN LLLPSIFLMV TDIVGFYLPP DSGERVSFKI TLLLGYSVFL bmy_19845T0/1-483 RRRPLFYAVS LLLPSIFLMV MDIVGFYLPP NSGERVSFKI TLLLGYSVFL BACU004004/1-483 RRRPLFYAVS LLLPSIFLMV MDIVGFYLPP DSGERVSFKI TLLLGYSVFL 301 350 ENSP00000347754/1-516 IIVSDTLPAT AIGTPLIGKA PPGSRAQSG- --EKPAPSHL LHVSLASALG ENSBTAP00000014292/1-484 IIVSDTLPAT AIGTPLI--- ---------- ---------- ---------- ENSTTRP00000011446/1-517 IIVSDTLPAT AIGTPLIGKA RSRGRAQCNR GPEEPALSHL PCVSPTPAPG bmy_19845T0/1-483 IIVSDTLPAT AIGTPLI--- ---------- ---------- ---------- BACU004004/1-483 IIVSDTLPAT AIGTPLI--- ---------- ---------- ---------- 351 400 ENSP00000347754/1-516 CTGVYFVVCM ALLVISLAET IFIVRLVHKQ DLQQPVPAWL RHLVLERIAW ENSBTAP00000014292/1-484 --GVYFVVCM ALLVISLAET ILIVRLVHKQ DLQQPVPAWL RHLVLERVTL ENSTTRP00000011446/1-517 CTGVYFVVCM ALLVISLAET ILIVRLVHKQ NLQQPVPAWL RHLVLERVAL bmy_19845T0/1-483 --GVYFVVCM ALLVISLAET ILIVRLVHKQ DLQQPVPAWL RRLVLERVAL BACU004004/1-483 --GVYFVVCM ALLVISLAET ILIVRLVRKQ DLQQPVPAWL RRLVLERVAL 401 450 ENSP00000347754/1-516 LLCLREQSTS QRPPATSQAT KTDDCSAMGN HCSHMGGPQD FEKSPRDRCS ENSBTAP00000014292/1-484 LLCLGDQSTA RRPAATSQAA KTDDCSDMGN HYSHLGGPRD LEKTPRGRGS ENSTTRP00000011446/1-517 LLCLGEQSTS RRPPATSQAP KTDACSHMAN HCSHLGGSRD LEKTPRGSGS bmy_19845T0/1-483 LLCLGEQSTS RRPPATSQAA KTNDCSDVTN HCNHLGGSRD LEKTPRGSGS BACU004004/1-483 LLCPGEQSTS RRPPATSQAA KTDDCSDMTN HCNHLGGSRD LEKTPRGSGS 451 500 ENSP00000347754/1-516 PPPPPREASL AVCGLLQELS SIRQFLEKRD EIREVARDWL RVGSVLDKLL ENSBTAP00000014292/1-484 PPPPPREASL AVRGLLQELT SIRHFLEKRE GSREVARDWL RVGSVLDRLL ENSTTRP00000011446/1-517 PPPPPREASL AVHGLLQELT SIRHFLEKRE ESREVAREWL RVGSVLDRLL bmy_19845T0/1-483 PPPPPREASL AVRGLLQELT SIRHFLEKRE ESREVARDWL RVGSVLDKLL BACU004004/1-483 PPPPPREASL AVRGLLQELT SIRHFLEKRE ESREVARDWL RVGFVLDKLL 501 550 ENSP00000347754/1-516 FHIYLLAVLA YSITLVMLWS IWQYA ENSBTAP00000014292/1-484 FRIYLLAVLA YSITLVTLWS IWQYS ENSTTRP00000011446/1-517 FRIYLLAVLA YGVTLVTLWS VWQYS bmy_19845T0/1-483 FRIYLLAVLA YSVTLVMLWS IWQYS BACU004004/1-483 FRIYLLAVLA YSVTLVTLWS VWQYS