KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 16:52:45 2014 Check: 00 .. Name: ENSP00000331012/1-335 Len: 343 Check: 5064 Weight: 1.00 Name: ENSBTAP00000014299/1-343 Len: 343 Check: 4213 Weight: 1.00 Name: bmy_14527T0/1-343 Len: 343 Check: 9952 Weight: 1.00 Name: ENSTTRP00000015247/1-176 Len: 343 Check: 8195 Weight: 1.00 // 1 50 ENSP00000331012/1-335 MIREWKNDCQ RIEKQRASDT MVQER----- ---KNEKPVR IFNTNSSFQD ENSBTAP00000014299/1-343 MIREWENGCP KIGKQRARDS RAQERMTTEG KLNKNGIPAR VFNISDSFLN bmy_14527T0/1-343 MTREWENGCQ KTGKQRARDS RAQEKMTTEG KSNKNGTPVQ VFNISDSFRD ENSTTRP00000015247/1-176 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000331012/1-335 QAPTCCQEDL SSASPLRIWS KFYRSDPRIA LGKYSPLEKE ILRLGGIHTI ENSBTAP00000014299/1-343 KESLSSQGDV CPASPLGIWT KFYKSDPRIA LGKYSPLEKE ILRLGGVHTV bmy_14527T0/1-343 KDSLCCQGDL CSASPLGIWT KFYKSDPRIA LGKYSPLEKE ILRLGGVHTI ENSTTRP00000015247/1-176 ---------- -------IWT KFCKSDPRVA VGKYSPLEKE ILRLGGVHTI 101 150 ENSP00000331012/1-335 AARRLLAYKQ EEECRMLKEL QLLSPDYKQA MEYKKKHSSP CAICVPLEKI ENSBTAP00000014299/1-343 AARRFLTYKQ EEERKMLKEL QTLSADYKRV VDCRRQHTPP CATCGSLGKM bmy_14527T0/1-343 AARRFLTYKQ EEERKMLKEL QVLSSDYKRA VEYRKQLTPP CATCGPLEKI ENSTTRP00000015247/1-176 ASRRFLTYKQ EEERKMLKEL QVLSSDYKRA VEYRKQLTPP CATCGPLEKI 151 200 ENSP00000331012/1-335 WTAKVIAPLE AFKMPQREQV NVSKHIERMR LARALGNHQP LPYIERFTRS ENSBTAP00000014299/1-343 WTAKVIVSPE EFRMPRRERL NVSKHIERMQ LARALRSKQL LPYIERFRGS bmy_14527T0/1-343 WTAKVMVAPE EFKMPQRERL NISKHIERMQ LARALRNKQL LPYIERFRSS ENSTTRP00000015247/1-176 WTAKVMVPPE EFKMPQRERL NVSKHIERMQ LARALRNKQP LPYIERFRSS 201 250 ENSP00000331012/1-335 SFLSGVGLGP MAKNKARRKE DNYDTHNCDD ANQDKKEEAE GKNTKRREIK ENSBTAP00000014299/1-343 SLLPSGGLGP MARARAGEGQ DDGNTDDGND VHQKGRGEVE SKTSKRQEIK bmy_14527T0/1-343 SLLSGGGLGP LARDKTGEGK DDRDADHCDY AHXEKTDEAX SKTTKRQEIK ENSTTRP00000015247/1-176 LLLSGGGLGL PGRDKTGEGK DDRDADPCDY AHQEKRDEAE SKT------- 251 300 ENSP00000331012/1-335 MNVVFKSKEP KKCLTYHGND RKSFLPAKKP ERSIAGLTNR NLFCISEFPG ENSBTAP00000014299/1-343 MNVIFKSEEP QKCITSHPND LKPFFPAKKA ERSITGLTNR SLLHVSEFPG bmy_14527T0/1-343 MNVIFKSEEP KKCVTYHPND LKPFLPTKKA ERSIAGLTNR NLLHLAEFPG ENSTTRP00000015247/1-176 ---------- ---------- ---------- ---------- ---------- 301 350 ENSP00000331012/1-335 DLMLMNQDFI SRRDHFSDLV KTYSLEEESI WKERMRKATP YHY ENSBTAP00000014299/1-343 DLMLMNQDFL SRGIYPSYAS QATRLEEENA WKEYMCKVAP HHY bmy_14527T0/1-343 DLMLXNQDFI SRGIHPSDVS KASCLEEGSA WKEYMHKAAS HHY ENSTTRP00000015247/1-176 ---------- ---------- ---------- ---------- ---