KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:52:47 2014 Check: 00 .. Name: ENSP00000361302/1-747 Len: 747 Check: 2694 Weight: 1.00 Name: ENSBTAP00000014315/1-725 Len: 747 Check: 9471 Weight: 1.00 Name: ENSTTRP00000008711/1-740 Len: 747 Check: 3576 Weight: 1.00 Name: bmy_05361T0/1-725 Len: 747 Check: 8380 Weight: 1.00 Name: BACU016201/1-725 Len: 747 Check: 7880 Weight: 1.00 // 1 50 ENSP00000361302/1-747 MWGFLKRPVV VTADINLSLV ALTGMGLLSR LWRLTYPRAV VFDEVYYGQY ENSBTAP00000014315/1-725 MLGFLQQPVM VTAEVNLNMV ALTAVGLLSR LWQLAYPRAV VFDEVYYGQY ENSTTRP00000008711/1-740 MLGFLQRPVV VTADINLNVV ALTAVGLLSR LWQLAYPRAV VFDEVYYGQY bmy_05361T0/1-725 MLGFLQRPVV VTADINLNVV ALTAVGLLSR LWQLSYPRAV VFDEVYYGQY BACU016201/1-725 MLGFLQRPVV VTADINLNVV ALTAVGLLSR LWQLSYPRAV VFDEVYYGQY 51 100 ENSP00000361302/1-747 ISFYMKQIFF LDDSGPPFGH MVLALGGYLG GFDGNFLWNR IGAEYSSNVP ENSBTAP00000014315/1-725 ISFYMKRIFF LDGSGPPFGH MLLALGGYLG GFDGNFLWNR IGAEYSSNVP ENSTTRP00000008711/1-740 ISFYMKRIFF LDGSGPPFGH MLLALGGYLG GFDGNFLWNR IGAEYSTNVP bmy_05361T0/1-725 ISFYMKRIFF LDGSGPPFGH MLLALGGYLG GFDGNFLWNR IGAEYSTNVP BACU016201/1-725 ISFYMKRIFF LDGSGPPFGH MLLALGGYLG GFDGNFLWNR IGAEYSTNVP 101 150 ENSP00000361302/1-747 VWSLRLLPAL AGALSVPMAY QIVLELHFSH CAAMGAALLM LIENALITQS ENSBTAP00000014315/1-725 VWSLRLLPAL SGALSVPMAY EIVWELGFSH CAATGAALLL LIENALITQS ENSTTRP00000008711/1-740 VWSLRLLPAL AGALSVPMAY QIVWELGFSH CAAVGAALLI LIENALITQS bmy_05361T0/1-725 VWSLRLLPAL AGALSVPMAY QIVWELGFSH CAAVGAALLI LIENALITQS BACU016201/1-725 VWSLRLLPAL AGALSVPMAY QIVWELGFSH CAAVGAALLI LIENSLITQS 151 200 ENSP00000361302/1-747 RLMLLESVLI FFNLLAVLSY LKFFNCQKHS PFSLSWWFWL TLTGVACSCA ENSBTAP00000014315/1-725 RLMLLESVLI FFNLLAVLSY LKFCNSQKHR PFSPRWWFWL VLTGVACSCA ENSTTRP00000008711/1-740 RLMLLESALI FFNLLAVLSY LKFSNSQKHG PFSPSWWFWL ILTGVACACA bmy_05361T0/1-725 RLMLLESVLI FFNLLAVLSY LKFSNSQKHR PFSPSWWFWL LLTGVACSCA BACU016201/1-725 RLMLLESVLI FFNLLAVLSY LKFSNSQKHR PFSPSWWFWL MLTGVACSCA 201 250 ENSP00000361302/1-747 VGIKYMGVFT YVLVLGVAAV HAWHLLGDQT LSNVGADVQC CMRPACMGQM ENSBTAP00000014315/1-725 VGIKYVGVFT YLLVLGVAAV HAWHVIGDQT LSN------- ---------- ENSTTRP00000008711/1-740 VGIKYVGVFT YLLVLGVAAV HAWHLIGDQT LSNVGADVLG RARLALGGR- bmy_05361T0/1-725 VGTKYVGVFT YLLVLGVAAA HAWHLIGDQT LSN------- ---------- BACU016201/1-725 VGTKYVGVFT YLLVLGVAAA HAWHLIGDQT LSN------- ---------- 251 300 ENSP00000361302/1-747 QMSQGVCVFC HLLARAVALL VIPVVLYLLF FYVHLILVFR SGPHDQIMSS ENSBTAP00000014315/1-725 -----VRVLC HLLARAAALV VLPVLVYLLF FYIHLLLLCR SGPHDQIMSS ENSTTRP00000008711/1-740 --GQGVRVLC HLLARAVALL VIPVLVYLLF FYVHLLLLCR SGPHDQIMSS bmy_05361T0/1-725 -----VCVLC HLLARAVALL VVPVLVYLLF FYVHLLLLCR SGPHDQVMSS BACU016201/1-725 -----VRVLC HLLARAVALL VIPVLVYLLF FYVHLLLLCR SGPHDQIMSS 301 350 ENSP00000361302/1-747 AFQASLEGGL ARITQGQPLE VAFGSQVTLR NVFGKPVPCW LHSHQDTYPM ENSBTAP00000014315/1-725 AFQASLEGGL ARVTQGQPLE VAFGSQVTLK NVFGQPVPCW LHSHQSTYPM ENSTTRP00000008711/1-740 AFQASLEGGL ARITQGQPLE VAYGSQVTLK NAFGQPMPCW LHSHQSTYPV bmy_05361T0/1-725 AFQASLEGGL ARITQGQPLE VAYGSQVTLK NVFGQPVPCW LHSHQSTYPM BACU016201/1-725 AFQASLEGGL ARITQGQPLE VAYGSQVTLK NVFGQPVPCW LHSHQSTYPM 351 400 ENSP00000361302/1-747 IYENGRGSSH QQQVTCYPFK DVNNWWIVKD PRRHQLVVSS PPRPVRHGDM ENSBTAP00000014315/1-725 IYENGRGSSH QQQVTCYPFK DVNNWWIVKD PGRHQLVVNN PPRPVRHGDV ENSTTRP00000008711/1-740 IYENGRGSSH QQQVTCYPFK DVNNWWIVKD PGRHQLVVNN PPRPVRHGDI bmy_05361T0/1-725 IYENGRGSSH QQQVTCYPFK DVNNWWIVKD PGRHQLVVNS PPRPVRHGDI BACU016201/1-725 IYENGRGSSH QQQVTCYPFK DVNNWWIVKD PGRHQLVVNN PPRPVRHGDI 401 450 ENSP00000361302/1-747 VQLVHGMTTR SLNTHDVAAP LSPHSQEVSC YIDYNISMPA QNLWRLEIVN ENSBTAP00000014315/1-725 VQLVHGMTTR LLNTHDVAAP LSPHAQEVSC YIDYNISMPP QNLWRLDIVN ENSTTRP00000008711/1-740 VQLAHGMTTR LLNTHDVAAP LSPHSQEVSC YIDYNVSMPA QNLWRLDIVN bmy_05361T0/1-725 VQLVHGMTTR RLNTHDVAAP LSPHSQEVSC YIDYNVSMPA QNLWRLDIVN BACU016201/1-725 VQLVHGMTTR LLNTHDVAAP LSPHSQEVSC YIDYNVSMPA QNLWRLDIVN 451 500 ENSP00000361302/1-747 RGSDTDVWKT ILSEVRFVHV NTSAVLKLSG AHLPDWGYRQ LEIVGEKLSR ENSBTAP00000014315/1-725 RESDTDVWKT ILSEVRFVHV NTSAILKLSG VPLPDWGFRQ LEVVGEKLFR ENSTTRP00000008711/1-740 RESDTDV-DI VSSEVRFVHV NT-AVSRLSG APLPDWGFRQ LEVVGEQLSR bmy_05361T0/1-725 RESDTDIWKT ILSEVRFVHV NTSAILKLSG APLPDWGFRQ LEVVGEKLSR BACU016201/1-725 RESDTDVWKT ILSEVRFVHV NTSAILKLSG APLPDWGFRQ LEVVGEKLSR 501 550 ENSP00000361302/1-747 GYHGSTVWNV EEHRYGASQE QRERERELHS PAQVDVSRNL SFMARFSELQ ENSBTAP00000014315/1-725 GYHESTVWNV EEHRYGRSQE QKERELELHS PTQVDISRNL SFMARFSELQ ENSTTRP00000008711/1-740 GYHGSTVWSV EEHRYGRSQE QKERELELHS PTQTDVSRNL SFMARFSELQ bmy_05361T0/1-725 GYHGSTVWNV EEHRYGRSQE QKERELELRS PTQTDASRNL SFMARFSELQ BACU016201/1-725 GYHGSTVWNV EEHRYGRSQE QKERELELRS PAQMDASRNL SFMARFSELQ 551 600 ENSP00000361302/1-747 WRMLALRSDD SEHKYSSSPL EWVTLDTNIA YWLHPRTSAQ IHLLGNIVIW ENSBTAP00000014315/1-725 WRMLTVRSDD SEHKYSSTPL DWVMLDTNIA YWLHPRTSAQ IHLLGNVVIW ENSTTRP00000008711/1-740 WRMLTVRSDD SEHKYSSTPL DWVMLDTNIA YWLHPRTSAQ IHLLGNIVIW bmy_05361T0/1-725 WRMLTVRSDD SEHKYSSTPL DWVTLDTNIA YWLHPRTSAQ IHLLGNIVIW BACU016201/1-725 WRMLTVRSDD SEHKYSSTPL DWVTLDTSIA YWLHPRTSAQ IHLLGNIVIW 601 650 ENSP00000361302/1-747 VSGSLALAIY ALLSLWYLLR RRRNVHDLPQ DAWLRWVLAG ALCAGGWAVN ENSBTAP00000014315/1-725 ASASLATLVY ALLFIWYLLR RRRRVCDLPE DRWLRWVLAG ALCAGGWAVN ENSTTRP00000008711/1-740 ASASLATLVY ALLFIWYLFR RRRRVCDLPE DCWLRWALAG ALCAGGWAVN bmy_05361T0/1-725 ASASLATLVY ALLFAWYLLR RRRRVCDLPE DCWLRWALAG ALCAGGWAVN BACU016201/1-725 ASASLATLVY ALLFVWYLLR RRRRVCDLPE GCWLRWALAG TLCAGGWAVN 651 700 ENSP00000361302/1-747 YLPFFLMEKT LFLYHYLPAL TFQILLLPVV LQHISDHLCR SQLQRSIFSA ENSBTAP00000014315/1-725 YLPFFLMEKT LFLYHYLPAL TFQILLLPVV LEHISDHLCR SQLQRSLFTA ENSTTRP00000008711/1-740 YVPFFMMEKT LFLYHYLPAL TFQILLLPVV LEHVSDHLCR SQLQRSLFGS bmy_05361T0/1-725 YVPFFVMEKT LFLYHYLPAL AFQILLLPVV LEHVSGRLCR SQLQRSFFSA BACU016201/1-725 YVPFFLMEKT LFLYHYLPAL AFQILLLPVV LEHVSGRLCR SQLQRSFFGA 701 750 ENSP00000361302/1-747 LVVAWYSSAC HVSNTLRPLT YGDKSLSPHE LKALRWKDSW DILIRKH ENSBTAP00000014315/1-725 LVVAWFTSAC HVSNMLRPLT YGDRSLSPSE LKALRWKDSW DILIRKY ENSTTRP00000008711/1-740 LVVAWLVSAC -VSNFLCPLS YGDRSLSPSE LKALRWKDSW DI-IRKN bmy_05361T0/1-725 LVVAWFASAC HVSNTLRPLT YGDRSLSPSE LKALRWKDSW DILIRKY BACU016201/1-725 LVVAWFASAC HVSNTLRPLT YGDRSLSPSE LKALRWKDSW DILIRKY